G117183


Basic Information

Item Value
gene id G117183
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40817176 ~ 40821330 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158278
ttggcAGATTAATTTTAGTTACAATCAAGTAGTAAAGAAATCCAGAAATCTCTTGTGTACAAATAAATTCAATATATGGTCtacactttttttcttcttctccagGAGGCTAATATACATAtcctttttaaagaaatgttcaaAACATTATCAAAAGTTTTGCTGTATGAAAACGTATTTACAAATCATGATTCAAAACCAGTGGACAGCTCCTGTCACCCCCTCCCCCCATGTAATCATTTACACAGTGCAGAAGGCTTCTCGAAAAAGTTTGTGCAACAAACAGTGTAGAAAATGTCTTGGAAACGGCTGTGGAATGGATGTGTTGCTTgaataatcataaaaagaaaaccCTTCCTCATGCTTCCTGATACTGTATATCGAcatatgaaggaaaaaaaaaagaaatatatatgcCTGGACATTTCTTCAAGTAGTACACGATCTCACAAGGGAAATCAAAATGGAGGTCATTATATCCACAGACCACAAAGCGAACCGATAGGAATGTCACCGGGGTGAGGAGGACCAAGCTTTACAGGTGAGTCACCAGATATACCTTTAACAAGTCAAATCACTTGGGAGGGCTTTGCTGTTGAAGTCTCTTGTAGTCTTGACTCTGAGGAGGGAGCGCTGTACAGTTCCAGGAGAGCATCTGGCTCATTTGTCCAGTTTGTCCGGTtcgttttcttattttttccccatgtGGAGGAAAAGCTAGCCCTTTCGAACACAACATGGTTAACACGGTTTGAGGGGCCATGAGAAGGATGAGTATGAGCTAAGAATGAGCAGATGGTAAGAAGGTTGGAGATGGTTAAAATGGATGTTAGTCACGATGGCTagagatggagaagcagcacGGTGCAACCCTGCACTGCACCATAGGACGGCAGGGATTACCATTATAAATGCATAGAGTAAGAATGCAGAAAGGTCGCTAAAGCACTGGTAGCGGTCTACAGAGGGTGAGTATCAGCTGAGAGATGCAAAACTCTTCTTATTAAACTTTATGGGACTGCACAATAAATTACGCTTGATAACGTGTTCATATCCCAACGCCAGAGCAGCACCTGATAAACCCATGAAGTTATGGAGTCATGGTGACTTACAAAAGGATGTTTGTGCAGTACTCTGACCTCAAAAAGCAGAAACACTAACTGTATACATTTATGtacacatacaaaaaacacacaaacagccaGACTTAGTCTGGAGAAAGACAAGTATTATTACCCTGTATTGCTCGTCTAAGATTCCTAAGAATCTGAGACCTATGTCGTTCACATTATTAGACCTGGAGTCAAAGAAGTATCTGAAGTAAGTTATGTAACATCAGAACATTACAAATCTAATCTATTACTGTAGCAATGTTACAAAAGGTCTTATTATCAAACAAGTTTCAATTGGAATATTTCAACTTGTCGCTGTCATACCAAAACATAAAATGGTTTCGTCAGTAGCTTTAGTGCATGTTTATGtaacactatttattttatcGAGGACCATTCCTATTGATCCACTTATCATCATGACATGTTCACACAATGTAAAGCACAGCTGGCAttttcaaaaaacacaaacaaaaaaaaggaggtTTTGATATGACAGCGACAAAATGCTTCCTACACTGTGTTCCAAACAGGTCCACATGAAACAGCACCCACTAAAAACAGTGACTACAAATGCAACAACGATAAGGACAAATCTGCCAGCTTCAGATCAGCCCGAAAGATCAAATTCATGCCAGAGCTGCCATCCAAAACAATGGAAATCTGCAAGAACAGTGAGTGTGTGGGGGCCCATGCCAGCGTATCCATCAGAGTTCATACGCTAAAGCAAAACATACAACCCGACGCAATTACAGAGCAAGCTTCATACGCATCCACCTCTCCTTCTCTTGCGTGCTTCTCTTACAATTCATGCTGAAAGAACCTTGACCGGTCGACTCCTACACTAGTAAACATACAGTAGCTTATTGGAGGAGTTCTCTTTGAAATGTCGAAGGTGTTGTACAAGCTCTGCGCTTTACTAGGCATGTCGCAGGAGAGAATAGCGGAGAGGGCTGAGAACAAACAGGCACTCCAGATGCAAGGCCACCCACACACGGCACACAGCGCaccacaacatacacacacacacactcacactcagatGATGAGGAGTCACCAGTCTCACATACCCTGTTTGCCAAAAAGAGATCGCTTaaagagaaaacacacaagCCAAAGAATTCTCAAccagtgtataaaaaaaatcaattctgCGCTTTTAACCCAGCAGAAGAATCTTCAATTTTGGCAAGAATGTCACATCTCGAATCACTTCACTCTCTCCATATCAAGATAATAATGAGAAAATGTTTCTTATTTGAGCTGTGTCAGAGCAGTACAGTCTGCAACAGTGACAGACATGCATGCGTAAGTCTTTTACAATgacacttgaaaaaaaaaagtttccacaTCACTGTACAGCAGTGTGCCAGCTTGACTCTCTTGCCTTCAGGCCTTCATTACATTATCAGGACAAATTTGAACCTGCCTCTTACAGGTGTCCAATCAGCCGAGCAGCGTCACAGAGATGGAGTGGTACAGAGATTAATGATCACTCATTCATCTTGTGGACTGTACCGGATGGGTTCAGCATGACGGACCCGGATATGAACAGGAAGCTCATATGCACGGTTCAAAAAacaggcagagagacagagaatgtAATCTATGATTAATCTTGTGGACAATTTTGTCCTAGCACAGGGTTTTAGTGCCATTTTCAGTAGGGCTTTTTTTCAGTTCTGATCTTAACAATAATAACTGTATTTGTTTAAGTGTTTTATCAACTCAGTGCACAATAATATAGAATGGATTATATGAataatagaagtaaaaaaaacaaaaaacaaaataagccAAACACTGAACTGGCAATGGAGACCTGTGCAGGAGCAATAAGTCAGTTTTAAATCCCTGCAGATGATGAGGCTGGGAAGAGCTCAGGAATAGCGAGCTTTGGGACATGGAAGACCCAGTGCTGGTGTGTTGAGAGAAGTCAGAgattaatgtataaatgtacagTAGCAGAAAACAGAGAGCAGGCCTTCCTGTCCTGCCTCATGTCCTCATATGACAGGTTAAAAAATCATGAAGGATTGCGCCTGGATCCATTATGTATGGAAGACATCTAAGTACAGTTGATGTGGTACTGGAAGATTGCTGACATTAACTTTTACGACTTACTCATTAGTTACTTAAGCCTGTTTAAAATTTCAACACAGTTCCATACAAACCAAGCATTTTCTTTAGGTGTAGAAGATACAGTTTAGAGTTTAAACCCTAAACTCTTCAGacagttctgttctgttctgtttgtgtCAGACTTGCACATAGATACTGTACATTATGCATGTAAATTCTATGCCCCCTGATCGCCATTCAGTGTAAATGCTATGGACATCTCATGCCAATAGGGCAGATTAGCCACTATTCCCTCCTCCCCTGAGCTGTGCCCTGCAGTTAGCTGTGTTATTGCCCTCCGGCACATTCATGCCCACGAGGAGCCCCACTTCTGCCTTCACGGCTCAGCCACCAAAACAGGCTTAGCATGTTTACACcagccaaaaaacaaaaagctaatTAATACGACACAGCAGGCCATTCCTGTGGTGCAAGCTGCAGCAGCCTCCACCAGGAGATTAAGAAGTACATGTCTGTAAAGGTTAGTCATCATGAAGCAGCATTCACTACTACTGTTCTATGTTCTAACAGAAAGATGCAGCAGTGAGAATCTACATCAGAATCTACAAAGTAGAAATAGAGGTTATTGTTAGTCTGTAGTAACTACTGATTCAGAAAGAAGAGCTATAGGCTTATAGCTATAAACTCAGACACTACAAAACAAACCCAGTTTGTCCAGTAGCTCTCTGTCACAGTCATGGAGAgcatgtgtttgagtgtgtatgtcgtctgcgctctctctttctctctctgtgtgcatCCCTGTGTAGTGCTGCAGTCTCCCCAGGAGACCACGGGCCCGAGACGAGAGGATGGATGGAcacagggagggagggagagagggatgtagggagggagggaggtaggGTGATGAGGAGGGAAGTAGAAAACGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158278 True 4126 lncRNA 0.42 2 40817176 40821330

Neighbor

gene id symbol gene type direction distance location
slc35d1 slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC107724140,LOC107758361,LOC107684099 coding upstream 19240 40786228 ~ 40797936 (+)
LOC103042225 NA coding upstream 33975 40777645 ~ 40783201 (+)
LOC103035173 serbp1,LOC107594603,LOC107758366,LOC107692416 coding upstream 84610 40725657 ~ 40732566 (+)
hsd17b7 hsd17b7,LOC107551038,LOC107724130 coding upstream 99106 40710906 ~ 40718070 (+)
ddr2 ddr2,ddr2a,LOC107551036,LOC107692417,LOC107724144 coding upstream 107349 40658400 ~ 40709827 (+)
LOC103041612 LOC108440175 coding downstream 299796 41121126 ~ 41125571 (+)
tmem125 tmem125,LOC108440199,LOC107725195,LOC107684333,LOC107551025 coding downstream 372772 41194102 ~ 41216267 (+)
tie1 tie1,LOC107731644,LOC107684058 coding downstream 461521 41282851 ~ 41305229 (+)
mpl NA coding downstream 487246 41308576 ~ 41323618 (+)
prpf38a prpf38a coding downstream 522092 41343422 ~ 41347799 (+)
G117156 NA non-coding upstream 187032 40624010 ~ 40630144 (+)
G117154 NA non-coding upstream 196410 40619568 ~ 40620766 (+)
G117152 NA non-coding upstream 236872 40567208 ~ 40580304 (+)
G117147 NA non-coding upstream 454599 40360340 ~ 40362577 (+)
G117111 NA non-coding upstream 680449 40129092 ~ 40136727 (+)
G117299 NA non-coding downstream 270171 41091501 ~ 41091992 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding downstream 404845 41226175 ~ 41233853 (+)
LOC111193789 NA non-coding downstream 483993 41305323 ~ 41306911 (+)
G117370 NA non-coding downstream 510871 41332201 ~ 41335785 (+)
G117379 NA non-coding downstream 529621 41350951 ~ 41352350 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 8631 40799471 ~ 40808545 (+)
G116997 NA other upstream 1457788 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 2422646 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 3204854 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 3695849 37100014 ~ 37121327 (+)
fam183a NA other downstream 337857 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 532171 41353501 ~ 41367729 (+)
G117642 NA other downstream 1530477 42351807 ~ 42355784 (+)

Expression


Co-expression Network