G117207


Basic Information

Item Value
gene id G117207
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40337761 ~ 40340478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158303
AGTGATCAGTGCAGACTTGTTTTGATGACACATCACTTCATACTCTAGAATATGATATTTTTCTAGTATGACTCTAAATAGATAACGCAGGTGAGAAAAGAAAGGAACAAAGGAACAAGCTCTCCTCTTCATTCTCTGCAACTTGTGTATTCACAGACAAGCAATACTGAATAACTTAAAATCAAATAGTAGTAAATTATTtacatatgaaaaataaatacatcttCAGATCTTTAATGGTATTTATGTGATCAGCTACAACAGTacatgcacatatatatatatatactgtatacgtTTAAGCAGCTTTGCTATAAATGACAGGTACTGAATAAGCCCTTAATTATAGTTAAATATAGGCATTAGGTGTGAACCTTtctatttaactttaaaattgatttaactttttaattggATACAATTTAACTTTTTCTCTTTAGTCTCCTTTGCAGATGCTTGTCAGATCTTTAAACTGGACTTGTTTGTTCAAATTTGGATTTAATCTTAAGGTAATAACTAATTTGAATAACCATAGATTGTTCTACTTCTGACCTGCAGTGTTCTAATACTTTTGGTTCTGTTGGGTAACTGTAAGGACTTATAAAGCACCTgtcattgtttattgtttataatcATGTATATAtgtaggatatatatatatatatataaagaaagggAAACAGATATACCGGTagatatactataatatatagtGAACAATGATAggtgaaaaaagagaaacataCAATAgtagtatatatgtatgtggtgggatcacaaacacacactttaatatATCATTTTAGGGAAATCACTTTAGGGCATATTACTAATACACAACACAACGTAATTAAATCATGTTTAAGACAACATGAAAAGTCTCAGGACTGTTTTAAAGTAAAGGAACTGCTTAGGAGCAGCATAAGAGCATGCAATATTTGAATGGAAATTGTAGATGGTAACATACACTCATGCTGGTACAATGCTTTACGTTTTTAGTGtcatataatattgtaatataattgcACAGTAAATGTTTCAAATATGTTTTGTATAATTTGTGCATAAACTCATGCTAATTCTTTTTGAATGGTGATCGTTATCGTTATTGTGTTGGGGTCAAACACATCCATtaatataggaaaaaaaaaaaaaggaaataatttTAGGGCTTATTACTAatacacacaatataatatGATGATGTCAACATGTCTGTGTTctgttttaaagtaaatgagCTGCTTAAGAGCAGCATAAGGGCATGCAATAATTTAATGGAAATTACACTGTATATCTTAGCATACTTACTCATGCTGGTAAATGCTTTTagtctgttattattataattacgcCTTTATAATTGCAGagtaaatgtttcagatttgtATAATTTGTATATAAACTCTGGGCTAATTCTTTTAAGTGGTGATAATTATTGGATGTACTCATCAGGGGGGCCttagggatgtttttttttcttttcttttccactGAAATCCAAACAAACGGTTGGAGAAAATTTGCGTTTGACATCCCTTGGGAAAGCTGTCCCTCTGGCTGAAGAAGACACTGTTTTCCAAAGCTTTATGAAGATCCACTCCTACTTGATATTCCCATCTTAGCAACTTACAATGTAGCTGTTATATTGCAACAAGCCTCCTCTCTGGCATTTCCCAGGGACCCAGTGCATTTAAACacgtctctttctttctttctcttactgTGACTGATGGTGGGCCTTTCAAGATTAATGGCGACACAAACCAGCCCCCCCTTCCCAAACCCCTACctcccaccccccaccccttcACTGTGCTATACCATATGACTGTTAATATTTGTGTGGACGtttccaggaaaaaaaaaagccctcgCCGTTAGCTTCCCCCTCCCCACACTGTCCTGTTTCTACTCTCCAAGCAGTCCATGAACTCGCTGCTCAGAAACTTCTACTAATTGCACCTTAGAGGTCAGATTACCCTCTTGAAAAACATGAGCCACTTGTCGTATTTCCAAGAAAAAGCACGGATTACAAGAGGGGATCAGTCTGGCtatgtttttctcctcttttattTAGTCTTGAAGGGAAAAATAGAGAAGAATATCATTCTAATTAACAGACTGTGCATTCCAAACTGTACCCAATTAATAGCATCCTCTATTAGCTTATTTGCATggttcatcatcatcacatgtTTTTGATTAATGACTAATAGTAGAATTGCCTTTTTTCAGTCATCATAAAGTAGTTATGATTATGAAAAAGACAGTTATTAGCAAGGGAATAGAGAGCTGCAGGGAGACTcgattttttgtatttttttccaatttcaatATCTTTCAAATCTTTCTAACAGATTGTCATGTTTTTACACAATCGCTTCATATAAAGGACTTTAGTTGCCTGAGGCCCGTAAATGAGGTGCTGGGAGCTACATAGATTAAACATCGATTGATGCTGGTTGGTCTGTTTTGTCTCCCTGCAGCTGAATGACCCCGTTTACTTGATCAGTTCTTGGTATTGCTCAGATCTGAGAAAGCGACCAAAGGAGTCTTTCTCCATCAGGGTGTAGATGCGGCTTTGGGCCAAATCGAAGGTGGTTGGGCTGAGATCCACCAGGTTCCTCAGGGTCACGTCTTTGGTAAAGTGGTCAATGTTCAC
>TU158304
AGTGATCAGTGCAGACTTGTTTTGATGACACATCACTTCATACTCTAGAATATGATATTTTTCTAGTATGACTCTAAATAGATAACGCAGGTGAGAAAAGAAAGGAACAAAGGAACAAGCTCTCCTCTTCATTCTCTGCAACTTGTGTATTCACAGACAAGCAATACTGAATAACTTAAAATCAAATAGTAGTAAATTATTtacatatgaaaaataaatacatcttCAGATCTTTAATGGTATTTATGTGATCAGCTACAACAGTacatgcacatatatatatatatactgtatacgtTTAAGCAGCTTTGCTATAAATGACAGGTACTGAATAAGCCCTTAATTATAGTTAAATATAGGCATTAGGTGTGAACCTTtctatttaactttaaaattgatttaactttttaattggATACAATTTAACTTTTTCTCTTTAGTCTCCTTTGCAGATGCTTGTCAGATCTTTAAACTGGACTTGTTTGTTCAAATTTGGATTTAATCTTAAGGTAATAACTAATTTGAATAACCATAGATTGTTCTACTTCTGACCTGCAGTGTTCTAATACTTTTGGTTCTGTTGGGTAACTGTAAGGACTTATAAAGCACCTgtcattgtttattgtttataatcATGTATATAataatatatatatataaagaaagggAAACAGATATACCGGTagatatactataatatatagtGAACAATGATAggtgaaaaaagagaaacataCAATAgtagtatatatgtatgtggtgggatcacaaacacacactttaatatATCATTTTAGGGAAATCACTTTAGGGCATATTACTAATACACAACACAACGTAATTAAATCATGTTTAAGACAACATGAAAAGTCTCAGGACTGTTTTAAAGTAAAGGAACTGCTTAGGAGCAGCATAAGAGCATGCAATATTTGAATGGAAATTGTAGATGGTAACATACACTCATGCTGGTACAATGCTTTACGTTTTTAGTGtcatataatattgtaatataattgcACAGTAAATGTTTCAAATATGTTTTGTATAATTTGTGCATAAACTCATGCTAATTCTTTTTGAATGGTGATCGTTATCGTTATTGTGTTGGGGTCAAACACATCCATtaatataggaaaaaaaaaaaaaggaaataatttTAGGGCTTATTACTAatacacacaatataatatGATGATGTCAACATGTCTGTGTTctgttttaaagtaaatgagCTGCTTAAGAGCAGCATAAGGGCATGCAATAATTTAATGGAAATTACACTGTATATCTTAGCATACTTACTCATGCTGGTAAATGCTTTTagtctgttattattataattacgcCTTTATAATTGCAGagtaaatgtttcagatttgtATAATTTGTATATAAACTCTGGGCTAATTCTTTTAAGTGGTGATAATTATTGGATGTACTCATCAGGGGGGCCttagggatgtttttttttcttttcttttccactGAAATCCAAACAAACGGTTGGAGAAAATTTGCGTTTGACATCCCTTGGGAAAGCTGTCCCTCTGGCTGAAGAAGACACTGTTTTCCAAAGCTTTATGAAGATCCACTCCTACTTGATATTCCCATCTTAGCAACTTACAATGTAGCTGTTATATTGCAACAAGCCTCCTCTCTGGCATTTCCCAGGGACCCAGTGCATTTAAACacgtctctttctttctttctcttactgTGACTGATGGTGGGCCTTTCAAGATTAATGGCGACACAAACCAGCCCCCCCTTCCCAAACCCCTACctcccaccccccaccccttcACTGTGCTATACCATATGACTGTTAATATTTGTGTGGACGtttccaggaaaaaaaaaagccctcgCCGTTAGCTTCCCCCTCCCCACACTGTCCTGTTTCTACTCTCCAAGCAGTCCATGAACTCGCTGCTCAGAAACTTCTACTAATTGCACCTTAGAGGTCAGATTACCCTCTTGAAAAACATGAGCCACTTGTCGTATTTCCAAGAAAAAGCACGGATTACAAGAGGGGATCAGTCTGGCtatgtttttctcctcttttattTAGTCTTGAAGGGAAAAATAGAGAAGAATATCATTCTAATTAACAGACTGTGCATTCCAAACTGTACCCAATTAATAGCATCCTCTATTAGCTTATTTGCATggttcatcatcatcacatgtTTTTGATTAATGACTAATAGTAGAATTGCCTTTTTTCAGTCATCATAAAGTAGTTATGATTATGAAAAAGACAGTTATTAGCAAGGGAATAGAGAGCTGCAGGGAGACTcgattttttgtatttttttccaatttcaatATCTTTCAAATCTTTCTAACAGATTGTCATGTTTTTACACAATCGCTTCATATAAAGGACTTTAGTTGCCTGAGGCCCGTAAATGAGGTGCTGGGAGCTACATAGATTAAACATCGATTGATGCTGGTTGGTCTGTTTTGTCTCCCTGCAGCTGAATGACCCCGTTTACTTGATCAGTTCTTGGTATTGCTCAGATCTGAGAAAGCGACCAAAGGAGTCTTTCTCCATCAGGGTGTAGATGCGGCTTTGGGCCAAATCGAAGGTGGTTGGGCTGAGATCCACCAGGTTCCTCAGGGTCACGTCTTTGGTAAAGTGGTCAATGTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158303 True 2665 lncRNA 0.35 2 40337761 40340478
TU158304 False 2656 lncRNA 0.35 2 40337761 40340478

Neighbor

gene id symbol gene type direction distance location
LOC111193786 NA coding downstream 1054846 39271790 ~ 39282915 (-)
lnp1 lnp1 coding downstream 1312599 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 1326007 39002702 ~ 39011754 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding downstream 1337596 38996878 ~ 39000165 (-)
LOC111193785 NA coding downstream 1356616 38978736 ~ 38981145 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 279004 40619482 ~ 40636689 (-)
LOC103034848 NA coding upstream 414870 40755348 ~ 40777657 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding upstream 884363 41224841 ~ 41249611 (-)
c13h1orf210 NA coding upstream 910539 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 984244 41324722 ~ 41335529 (-)
G117120 NA non-coding downstream 167556 40169837 ~ 40170205 (-)
G117115 NA non-coding downstream 201075 40129216 ~ 40136686 (-)
G117107 NA non-coding downstream 265844 40071596 ~ 40071917 (-)
G117103 NA non-coding downstream 299283 40038117 ~ 40038478 (-)
G117100 NA non-coding downstream 308814 40005850 ~ 40028947 (-)
G117217 LOC103358909,LOC107711121,LOC107551033 non-coding upstream 77793 40418271 ~ 40512239 (-)
G117232 nos1ap non-coding upstream 254574 40595052 ~ 40600261 (-)
G117235 NA non-coding upstream 273721 40614199 ~ 40614416 (-)
G117223 NA non-coding upstream 283859 40624337 ~ 40626142 (-)
G117239 uap1,LOC107551035 non-coding upstream 302470 40642948 ~ 40650103 (-)
LOC103028549 NA other downstream 1046733 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 1374067 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 1438315 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 1953163 38381270 ~ 38384598 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other downstream 2089137 38233474 ~ 38248624 (-)
LOC103040080 LOC108440156 other upstream 19841 40360319 ~ 40363960 (-)
LOC103034527 NA other upstream 390818 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 475655 40816133 ~ 41017814 (-)

Expression


Co-expression Network