G117235


Basic Information

Item Value
gene id G117235
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40614199 ~ 40614416 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158336
aaaaaacagcttgaaattttggcatggccggccaactcgcctgacctcaatgtcattgaaaacctttgggccatcgtcaagcggaaaattcgcgacagaaagcctactacgctggaccaactgaagcagaacatcgccactgcctgggaagctgtgagtgcggaaacttgcgacaagctggtcaaatcgatgccgcggagacttcaggcagtcataca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158336 True 218 lncRNA 0.51 1 40614199 40614416

Neighbor

gene id symbol gene type direction distance location
LOC111193786 NA coding downstream 1331284 39271790 ~ 39282915 (-)
lnp1 lnp1 coding downstream 1589037 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 1602445 39002702 ~ 39011754 (-)
LOC103032030 zgc:110788,LOC108440097,LOC107711028,LOC107673477,LOC107726515,LOC107585211,LOC107580362 coding downstream 1614034 38996878 ~ 39000165 (-)
LOC111193785 NA coding downstream 1633054 38978736 ~ 38981145 (-)
uhmk1 uhmk1,LOC107692420 coding upstream 5066 40619482 ~ 40636689 (-)
LOC103034848 NA coding upstream 140932 40755348 ~ 40777657 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding upstream 610425 41224841 ~ 41249611 (-)
c13h1orf210 NA coding upstream 636601 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 710306 41324722 ~ 41335529 (-)
G117232 nos1ap non-coding downstream 13938 40595052 ~ 40600261 (-)
G117217 LOC103358909,LOC107711121,LOC107551033 non-coding downstream 101960 40418271 ~ 40512239 (-)
G117207 NA non-coding downstream 273721 40337761 ~ 40340478 (-)
G117120 NA non-coding downstream 443994 40169837 ~ 40170205 (-)
G117115 NA non-coding downstream 477513 40129216 ~ 40136686 (-)
G117223 NA non-coding upstream 9921 40624337 ~ 40626142 (-)
G117239 uap1,LOC107551035 non-coding upstream 28532 40642948 ~ 40650103 (-)
G117240 NA non-coding upstream 38635 40653051 ~ 40653775 (-)
G117253 NA non-coding upstream 93366 40707782 ~ 40709792 (-)
LOC111193788 NA non-coding upstream 103440 40717856 ~ 40721125 (-)
LOC103040080 LOC108440156 other downstream 250239 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 1323171 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 1650505 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 1714753 38630637 ~ 38899446 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other downstream 2229601 38381270 ~ 38384598 (-)
LOC103034527 NA other upstream 116880 40731296 ~ 40769682 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 201717 40816133 ~ 41017814 (-)

Expression


Co-expression Network