G117278


Basic Information

Item Value
gene id G117278
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 40799599 ~ 40802426 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158398
CTCGAGTGAGGTCGTCTATCTCAGAACTGAAGTTGGTCTCTCCTTGCAGCATCTCCTCCTCCTCAAGCGTCTGCTCATCGTCAAAGTCATGAACAAGCATGTCTGCAGACGGCTCAAAGTCAGCATCCTCATCCCGAATGGCTGAGGACCCTTGTGTAGGTGCACCACTTAAGGAAAGCTCCGCCATTATTGATTATTACTAAGagacagggtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158398 True 214 lncRNA 0.50 3 40799599 40802426

Neighbor

gene id symbol gene type direction distance location
LOC103034848 NA coding downstream 21942 40755348 ~ 40777657 (-)
uhmk1 uhmk1,LOC107692420 coding downstream 162910 40619482 ~ 40636689 (-)
LOC111193786 NA coding downstream 1516684 39271790 ~ 39282915 (-)
lnp1 lnp1 coding downstream 1774437 39013038 ~ 39025162 (-)
LOC103031712 tmem45a,LOC107685333 coding downstream 1787845 39002702 ~ 39011754 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding upstream 422415 41224841 ~ 41249611 (-)
c13h1orf210 NA coding upstream 448591 41251017 ~ 41260579 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding upstream 522296 41324722 ~ 41335529 (-)
tspan1 NA coding upstream 568610 41371036 ~ 41385641 (-)
LOC111193790 NA coding upstream 779407 41581833 ~ 41582017 (-)
G117277 slc35d1,slc35d1a,LOC108272060,LOC108441641,LOC107758361,LOC107551012,LOC107724140 non-coding downstream 1780 40795912 ~ 40797819 (-)
G117276 slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC101078039,LOC107551012 non-coding downstream 3795 40792755 ~ 40795804 (-)
G117274 NA non-coding downstream 13072 40786221 ~ 40786527 (-)
LOC111193788 NA non-coding downstream 78474 40717856 ~ 40721125 (-)
G117253 NA non-coding downstream 89807 40707782 ~ 40709792 (-)
G117300 NA non-coding upstream 289048 41091474 ~ 41091994 (-)
G117305 NA non-coding upstream 318326 41120752 ~ 41121048 (-)
G117357 NA non-coding upstream 502111 41304537 ~ 41307461 (-)
G117374 prpf38a non-coding upstream 541067 41343493 ~ 41347260 (-)
G117381 NA non-coding upstream 547071 41349497 ~ 41350906 (-)
LOC103034527 NA other downstream 29917 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 435639 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 1508571 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 1835905 38953162 ~ 38963694 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other downstream 1900153 38630637 ~ 38899446 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other upstream 13707 40816133 ~ 41017814 (-)

Expression


Co-expression Network