fam183a


Basic Information

Item Value
gene id fam183a
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41159187 ~ 41166159 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158430
CGCTGGAACGTGTTTACAGTTGCCAGGCAACAAGAAGAGAGCGAAGGTAATTCCTCACGAGGAAAAGTCTGCTGTTAAAGAGTCAGACAGGCCGATTTAACACTATATTCACATATTTTACCAGCACATAACTTAAACATAACTCAAACAGGCAATGTCAGCTCCGggtaaaactaaagaaacagaACCTGTGGATATAGTTCACCAAAACGCCATTTTTGTGGAGAGGATCCGGAAAGAGCAGAGGAGCCAAAAACTTCACACAGAGTTCAGCATTAACCCTAAAAAACG
>TU158434
tcatCCATGACAGAGTCTCAAGAAATTGGGTGGATATCAACTCCTCTGATTGTTTCAGATCGCTCAGATGGAAGATTGAACTTTGCACGGAAGAAAACAGATATCACCCAATACATGAACGCTGCCTTTCATCTGAAGGAACAAACCCAGAACCTTAGGTGAAATAAGCTGTCTCAATATACTGCTCTTTGGTTCTTAAAcatgcaataaaataacaattagtCAGATTTCTTTCCATCTTCTGTTAAATCACAGTGCCACATGATATGCAAGGTCATTTTTCATTAACCTTGGTCATCTATTATTAATCATCTTGACTGAGAAAACATTTCATGTCATGAATCAATTTTACAAAATGTCATGTCATGTTGAAACATGAAACGAATTGAAATATCTTGCAAATTTTGCTCTTTACAAGAGAAAAATCCATAAACATTAAGGCAAGCAGCTAATTAACAATTGACCTATCTGCACTCTTTGTCCAGTTAAAATCTCTCCCAACCAGAGCCACACCTGAAAGTGAATatctgaacattttattttagtgatatgacagattaaaatgttctgtatgtaTCAACAAATGTTGTTTATTACCAGAGATATATTCCATATTTTGAGATGGgtgtaaacaaacacatttcatatagtgtttttt
>TU158437
tcatCCATGACAGAGTCTCAAGAAATTGGGTGGATATCAACTCCTCTGATTGTTTCAGATCGCTCAGATGGAAGATTGAACTTTGCACGGAAGAAAACAGATATCACCCAATACATGAACGCTGCCTTTCATCTGAAGGAACAAACCCAGAACCTTAGGTGAAATAAGCTGTCTCAATATACTGCTCTTTGGTTCTTAAAcatgcaataaaataacaattagtCAGATTTCTTTCCATCTTCTGTTAAATCACAGTGCCACATGATATGCAAGGTCATTTTTCATTAACCTTGGTCATCTATTATTAATCATCTTGACTGAGAAAACATTTCATGTCATGAATCAATTTTACAAAATGTCATGTCATGTTGAAACATGAAACGAATTGAAATATCTTGCAAATTTTGCTCTTTACAAGAGAAAAATCCATAAACATTAAGGCAAGCAGCTAATTAACAATTGACCTATCTGCACTCTTTGTCCAGTTAAAATCTCTCCCAACCAGAGCCACACCTGAAAGTGAATatctgaacattttattttagtgatatgacagattaaaatgttctgtatgtaTCAACAAATGTTGTTTATTACCAGAGATATATTCCATATTTTGAGATGGgtgtaaacaaacacatttcatATAGTGTTTTTTGTATGCAGTCTGTCATCATTTTGTGGCCTTTttgttatacatatttattgaaatgtttcatatgactgtttttaaatactgtagtgATGTATTCACATGAATCAAAAAAATCTTGTGATTTGAATTTCACCATATTAAAAGATATTGGCTGATTCATACATGCTGTCATGTCCATAAGTATTAGGACAGTTGTACACTCTATTATTAACATCACCTCAAAGCAATTAAGATGTGTTTAAAGTGCAGACTTTCACCTGTAAATCAAGGAGTTACACAAaaattgcatctttttttttacacactcaAAAGCATTT
>XM_022675128.1
AGTTGCCAGGCAACAAGAAGAGAGCGAAGGTAATTCCTCACGAGGAAAAGTCTGCTGTTAAAGAGTCAGACAGGCCGATTTAACACTATATTCACATATTTTACCAGCACATAACTTAAACATAACTCAAACAGGCAATGTCAGCTCCGggtaaaactaaagaaacagaACCTGTGGATATAGTTCACCAAAACGCCATTTTTGTGGAGAGGATCCGGAAAGAGCAGAGGAGCCAAAAACTTCACACAGAGTTCAGCATTAACCCTAAAAAACGTgagtatacatcatCCATGACAGAGTCTCAAGAAATTGGGTGGATATCAACTCCTCTGATTGTTTCAGATCGCTCAGATGGAAGATTGAACTTTGCACGGAAGAAAACAGATATCACCCAATACATGAACGCTGCCTTTCATCTGAAGGAACAAACCCAGAACCTTAGGTGAAATAAGCTGTCTCAATATACTGCTCTTTGGTTCTTAAAcatgcaataaaataacaattagtCAGA

Function

NR:

description
PREDICTED: protein FAM183A-like

GO:

id name namespace
GO:0120031 plasma membrane bounded cell projection assembly biological_process
GO:0060271 cilium assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158430 False 291 lncRNA 0.42 1 41159187 41159477
TU158434 False 658 lncRNA 0.34 2 41163809 41164660
TU158437 True 972 lncRNA 0.32 3 41163809 41166159
XM_022675128.1 False 511 mRNA 0.40 3 41159204 41164229

Neighbor

gene id symbol gene type direction distance location
LOC103041612 LOC108440175 coding upstream 33616 41121126 ~ 41125571 (+)
slc35d1 slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC107724140,LOC107758361,LOC107684099 coding upstream 361251 40786228 ~ 40797936 (+)
LOC103042225 NA coding upstream 375986 40777645 ~ 40783201 (+)
LOC103035173 serbp1,LOC107594603,LOC107758366,LOC107692416 coding upstream 426621 40725657 ~ 40732566 (+)
hsd17b7 hsd17b7,LOC107551038,LOC107724130 coding upstream 441117 40710906 ~ 40718070 (+)
tmem125 tmem125,LOC108440199,LOC107725195,LOC107684333,LOC107551025 coding downstream 27943 41194102 ~ 41216267 (+)
tie1 tie1,LOC107731644,LOC107684058 coding downstream 116692 41282851 ~ 41305229 (+)
mpl NA coding downstream 142417 41308576 ~ 41323618 (+)
prpf38a prpf38a coding downstream 177263 41343422 ~ 41347799 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding downstream 320302 41486461 ~ 41801791 (+)
G117299 NA non-coding upstream 67195 41091501 ~ 41091992 (+)
G117183 NA non-coding upstream 337857 40817176 ~ 40821330 (+)
G117156 NA non-coding upstream 529043 40624010 ~ 40630144 (+)
G117154 NA non-coding upstream 538421 40619568 ~ 40620766 (+)
G117152 NA non-coding upstream 578883 40567208 ~ 40580304 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding downstream 60016 41226175 ~ 41233853 (+)
LOC111193789 NA non-coding downstream 139164 41305323 ~ 41306911 (+)
G117370 NA non-coding downstream 166042 41332201 ~ 41335785 (+)
G117379 NA non-coding downstream 184792 41350951 ~ 41352350 (+)
G117474 NA non-coding downstream 612792 41778951 ~ 41784207 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 350642 40799471 ~ 40808545 (+)
G116997 NA other upstream 1799799 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 2764657 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 3546865 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 4037860 37100014 ~ 37121327 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 187342 41353501 ~ 41367729 (+)
G117642 NA other downstream 1185648 42351807 ~ 42355784 (+)

Expression


Co-expression Network