G117370


Basic Information

Item Value
gene id G117370
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41332201 ~ 41335785 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158523
GGTCCAACTTCTTGCGGATGGTTGGATTTGAGGAGACTCTGCTTCTCCTTTTTACATTCAGTACTTTAGCTGCAGAGAGCTTGGAAGCAGAGTGGGCCGACTCTGCCTCAGTTGAGTTTATCTTGCCCGTGCTCATGCTGCCACGGGTTGCAATGCCAGTCATGGCTCTCTTCATCACACTGGGGTCTGGGGTGGGGAGAGAACGAAGTCTGGGTGCACGCTGGGCGGGTGGTGGAGACCTGGGGCTCTGAGGAGACTGAAACAGCTCAGTGTCCAAAATTCGAAATGCCTTAGTGTCCCACAAAAGCTTCACAAACAGAGTATCCTTGCTTGCCCCATCTGGAAACTGAGCCTCAGCAGGAATCTGGGTAACCTGAACTGCTCCTAGGATGGTTTCGGCATCCACCTCGTTGTCACAGGAGCTATCTTGGTAGTAAAAGATTTCTTGAGGGTGGGGGTCTCTGCCCAGAAGCCCTATTTTGTTGGATGGTATTTCACTTACACGCACGAACCACTTCACCACTgcctttttcttctttccagTGTCATCAGTGAAAAGCTTAAGAAGCTGTGCAACAAACGGGTTGTCCTCGTCATCTCCCTCAATCAGTATGCACTGGCCTACAGACACCACAGCTTTCCTCGGCCTTCCATCCACAGCTATAGACAAAGACCTATAAAACGCTCTCTTCAGTTTTCTGTCTTCTGTAATCGGCCTTCCTTCCAGTTTATAACTCCTTCGTATACGTAGCATAGTGTGGTAGCGGCTCATTTTGGTGACTTTTAGTAGAGCCTCTGCAATATATCAAGCTTCTTTAACCAATCCGACAGTATGCTGCGTGTGCTGTTATCCTTACTAGATGGGAAAGTGATATAAcgttaaaactttaaaacactgATCCGTGCTCGCTCTGTCTCCCCCAACCCCCTGTTGCCTTCAGACACGACACACAACTTTTCCCGCGAAAGAAGAGGACTATTTGCATACCGACATATCATTGGACCAGTGGAATGAATCCACGCCTACTGACCCGATGGCGTAGGCCGTGCGTGTCATAACTACATGCTGACTTGCTGTCCTACTACCTAAACCTTCTCACTTAAAGCCGTAGAAAGCGGTGAATCTGTAAccgaaacaaaaaagaaaaatagcgCTTCCTGCCATACAATATATGATCGTTTATGTGTGTTCTCATTAGCTGTTAACCTTAATGCTAAACAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158523 True 1225 lncRNA 0.47 5 41332201 41335785

Neighbor

gene id symbol gene type direction distance location
mpl NA coding upstream 8583 41308576 ~ 41323618 (+)
tie1 tie1,LOC107731644,LOC107684058 coding upstream 26972 41282851 ~ 41305229 (+)
tmem125 tmem125,LOC108440199,LOC107725195,LOC107684333,LOC107551025 coding upstream 115934 41194102 ~ 41216267 (+)
LOC103041612 LOC108440175 coding upstream 206630 41121126 ~ 41125571 (+)
slc35d1 slc35d1,slc35d1a,LOC108441641,LOC108272060,LOC107724140,LOC107758361,LOC107684099 coding upstream 534265 40786228 ~ 40797936 (+)
prpf38a prpf38a coding downstream 7637 41343422 ~ 41347799 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding downstream 150676 41486461 ~ 41801791 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding downstream 754204 42089989 ~ 42099620 (+)
ccdc17 NA coding downstream 766156 42101941 ~ 42113536 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding downstream 881729 42217514 ~ 42270031 (+)
LOC111193789 NA non-coding upstream 25290 41305323 ~ 41306911 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding upstream 98348 41226175 ~ 41233853 (+)
G117299 NA non-coding upstream 240209 41091501 ~ 41091992 (+)
G117183 NA non-coding upstream 510871 40817176 ~ 40821330 (+)
G117156 NA non-coding upstream 702057 40624010 ~ 40630144 (+)
G117379 NA non-coding downstream 15166 41350951 ~ 41352350 (+)
G117474 NA non-coding downstream 443166 41778951 ~ 41784207 (+)
G117396 NA non-coding downstream 466618 41802403 ~ 41873492 (+)
G117508 mast2 non-coding downstream 556415 41892200 ~ 41897363 (+)
G117530 nasp,LOC107683970,LOC107731628 non-coding downstream 795798 42131583 ~ 42137890 (+)
fam183a NA other upstream 166042 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 523656 40799471 ~ 40808545 (+)
G116997 NA other upstream 1972813 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 2937671 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 3719879 37524851 ~ 37612322 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 17716 41353501 ~ 41367729 (+)
G117642 NA other downstream 1016022 42351807 ~ 42355784 (+)

Expression


Co-expression Network