pomgnt1 (pomgnt1,LOC102776429)


Basic Information

Item Value
gene id pomgnt1
gene name pomgnt1,LOC102776429
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41353501 ~ 41367729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158532
CCATTAGTAATGGCACAGTTGGTGCCTTCACTCTGATGGACAGAGTCTTCACATGCAGAGAACCGGCTAAACACTGCTAACCTTTAGCggaataatgtaaaataactcTGTAAATATGGGGGGCATCGACACATAAACACCAGTAACGGCAGGCAGCAGTTGTAAGGGATGGACACCTGGACGCCCAACCCACGGGCCAAGCCCTTCATCCCTAGACAGCAGCGTAGTTTCTACCTAACATGGAAATACAAACTTTCCAACAAAAGAGCCATCCGAAGACTCTGCCAGGCGAG
>TU158550
CCTAGCCTAATTTATTtaggttttgtatttttgtctatTGTACTGAATTGATACTGTAGGTAATTTGtgttatgttttctttttgttgtgtagGAAGTGTACTTTAAGAAGCACAAGTTTAACACCGTCCCGAATgttcaattaaaaaatgttgacgGCTTGAAGAAAGATGACTATGAAGTTGAGATCCAGAATTTGTTACGTGAGGCAGAAGTTTTAGACCACAGCAAGAACCCTTGTGAGGATTCCTTTATACCAGACACTGAGGGCAAAACCTATATCATGTTTATCAAGATGGAGCAAGAAACAGATACCAGCACATGGACTGAACTGgctaagTGCCTGCATGTGTGGGATCTAGACGTGCGAGGCTATCACAGAGGGCTATGGAGACTCTTCAGAAAGAAGAACCATGTCCTTGTAGTGGCAGTTCCAGTCTCTGCCTACTCCATTAGGAAACCTGCTCACGTTACCCCGATTCATCTGCAGCCTCCGCCTAAAGAAGAGGGAGCCCCTGTGGAGCAGATGTAGAGCAGCTGCAGCCAGCTCCCAGGCTGCTTCTTAGCAGAGGCCACACTCGCACTGGGCATGCAACGGCCCTGTACTGGGAGAACCTCCTCCCGTCTGGCCACTCAGAAAAGCTGGGCTAGCTACCACAGCTTGTCCTTGTCCTTCACTAGAGCATTGTATGTGCTGCTTGTCTGGACCACAAGCTCTTGCATTATGTGAAGTGAGCATTTCTGGAGAATGGTAATGATGAGTAAAGCTCGATCAAATACTGGGAGGAGTTACAGTAAGTATTTAGAATTGTCCCGTGATTTCAAGATTACCGTGTGCATCCTTTATGCATTTGTGCTGAGAAAATGTAGAGAGATGTACAATTGTATTCCGTTAGATAAGAGCCAATCAACATTTCGTAGTTCTGATTTGGTACCTTGACTGAGCAAATGGTTTTGAACAAACTGGAAGACTGATTAAGAGAACTGAAGAGTATTAGATAAGAAAGGAATGGCAAAATCATACTACTATTTTTTAACACTACTGAATGCTTTCGGttttactgtacatacattttaacttaagcctatttattttaccatttgGGGGTTTCTTATGTTAGTGAGTTCAGatttatcagtatcagtatactTAGAGACAAAGGCCTGCAGTTGTTTACAAATATAAAGTTCTATAGACctatatttttggaaaaaaagcttGTCACCTTTTATTTAAGAGGTGGGTGGTAGTAGATACAAGGTTggtactgtttttgtttatcACCTGTTTGTGTAATAAAGAGACCCACAGCTGGTTGAGAGAATGTATGGTGCTCTTGTTGAAATGCACATCATTACCTCAGgtgatatttttaattaaagattCCATGAAGATGCATTCAGTCAGTAATTTAAATACACTGTCAGTTTCTTAAAGATTTGTGGTAACTCTTTTATGTTAtgtccttttttgttttcttcctaGTGGATAATCCCTGAGTTTATATCAATGTTGGATAAGATCTGGATGATATCTATGTCCAAATAAATTGTCAGGCaatgaaaaatacttttttatcaaTGCTATCTTGAGTACACTCTAGGTTCGTCCTGTTTCAATGTGACTGCCTTTATTTGATAATACTCATGTAAAAGAAAGTAATTTGCCATAAGTCCTGCAATAATATCCTATTCAGAGATCAGTGCTACGGTTAGCTACAGGCTTTACACTTTTAGGTATTTTTTTTGCTCTACAGCTAAATATTTTCTATGCGAATATGTGCAATAGCTGGGCAGATGTgtcatttagatttttgtttttctttttaaaatgactgACATTTTGCAGTATCAAGTGGAGACATGTCACCAAGTCCTTTAagcatttaattttctttttacatctGTTTGTGTAACT
>XM_022675129.1
GTTGGTGCCTTCACTCTGATGGACAGAGTCTTCACATGCAGAGAACCGGCTAAACACTGCTAACCTTTAGCggaataatgtaaaataactcTGTAAATATGGGGGGCATCGACACATAAACACCAGTAACGGCAGGCAGCAGTTGTAAGGGATGGACACCTGGACGCCCAACCCACGGGCCAAGCCCTTCATCCCTAGACAGCAGCGTAGTTTCTACCTAACATGGAAATACAAACTTTCCAACAAAAGAGCCATCCGAAGACTCTGCCAGGCTGGTGCAGTGTTGTTCTTGTTGGTTACAGTACTTGTGAACATAAAACTTATACTTGACACAAGGAGAGCTGCTAGTGAGGACGAAGATGCTGCACGAGACTATGATGATAACTTGGCCAACATGGAAACCCCACGAAGACCAGCCAGTGGGCGCAAGGTGTTAGACATTGAAGTCTACTCCAGTCGCTCCAAGGTGTATGTGGCAGTTGATGGTACCACAGTATTGGAGGATGAGATGCGGGAGCAGGGAAGAGGCATACATGTCATAGTGCTAAATCAGGCCACTGGTCACGTAATGGCGAAGAGAGTATTTGACACCTACTCTCCGCATGAGGATGAAGCCATGATCCTCTTCCTCAACATGGTCACTCGTGGTAGAGTCCTCATTTTCACCATCAAGGATGAGGGAACCTTTCATCTGAAGGATGCTGCCAAGAATCTGTTAAAGGGGCTGGGCAGCCAGGTGGCAGCAACTCTCAGTTGGAGGGACATGTGGGCACTGGTTGTGAAGAAAGGAGGCCAGGTATATGGGGAGAAGCACTCAAAGTCACCTGCACTCTCTACATGGGGAGATCCTGTACTGCTGAAAACTGAGGTTCAGCTCACTGCTGCTGAAGAAGCAGAGTGCCACTGGGCTGAGACGGAGTTGAACCGTAGGAGGAAGCTGTTTTGCAGTAAAGTGGAAGGCTACGGTAGCATCTGCAGCTGCAAGGATCCAGCACCCATAGAGTTCAACCCAGAACCACTTCCCAACAATAATGTCTACAATGTTCCAGTTGCTGTCATTGCTGGAAACAGACCCAACTATCTCTACAGAATGCTGCGCTCACTCCTGTCCTCTCATGGTGTGAACCCACAGATGATCACTGTTTTCATTGATGGATATTATGAGgaaCCTATGGATGTGGTGGAGCTCTTTGGCCTTAAAGGCGTTCAACACACACCAATCAGCATTAAGAATGCACGTGTATCACAGCACTATAAAGCCAGCCTGACTGCCACATTCAACCTACATCCAGATGCAAACTTTGCCATTGTCTTGGAGGAAGATCTGGACATTTCCATAGATTTCTTCAGCTTTCTTAGTCAGACCATTCACTTGCTGAATGAAGATGAGAGTCTCTATTGTATCTCAGCATGGAATGACCAAGGatatgaacacacagcagaggaCCCTTCACTGCTTTACAGAGTGGAGAGTATGCCAGGGTTGGGCTGGGTGCTGAAAAAAAGCATCTACAAGGATGAGCTAGAGCCCAAGTGGCCCACACCCGAGAAGGAAGTGTACTTTAAGAAGCACAAGTTTAACACCGTCCCGAATgttcaattaaaaaatgttgacgGCTTGAAGAAAGATGACTATGAAGTTGAGATCCAGAATTTGTTACGTGAGGCAGAAGTTTTAGACCACAGCAAGAACCCTTGTGAGGATTCCTTTATACCAGACACTGAGGGCAAAACCTATATCATGTTTATCAAGATGGAGCAAGAAACAGATACCAGCACATGGACTGAACTGgctaagTGCCTGCATGTGTGGGATCTAGACGTGCGAGGCTATCACAGAGGGCTATGGAGACTCTTCAGAAAGAAGAACCATGTCCTTGTAGTGGCAGTTCCAGTCTCTGCCTACTCCATTAGGAAACCTGCTCACGTTACCCCGATTCATCTGCAGCCTCCGCCTAAAGAAGAGGGAGCCCCTGTGGAGCAGATGTAGAGCAGCTGCAGCCAGCTCCCAGGCTGCTTCTTAGCAGAGGCCACACTCGCACTGGGCATGCAACGGCCCTGTACTGGGAGAACCTCCTCCCGTCTGGCCACTCAGAAAAGCTGGGCTAGCTACCACAGCTTGTCCTTGTCCTTCACTAGAGCATTGTATGTGCTGCTTGTCTGGACCACAAGCTCTTGCATTATGTGAAGTGAGCATTTCTGGAGAATGGTAATGATGAGTAAAGCTCGATCAAATACTGGGAGGAGTTACAGTAAGTATTTAGAATTGTCCCGTGATTTCAAGATTACCGTGTGCATCCTTTATGCATTTGTGCTGAGAAAATGTAGAGAGATGTACAATTGTATTCCGTTAGATAAGAGCCAATCAACATTTCGTAGTTCTGATTTGGTACCTTGACTGAGCAAATGGTTTTGAACAAACTGGAAGACTGATTAAGAGAACTGAAGAGTATTAGATAAGAAAGGAATGGCAAAATCATACTACTATTTTTTAACACTACTGAATGCTTTCGGttttactgtacatacattttaacttaagcctatttattttaccatttgGGGGTTTCTTATGTTAGTGAGTTCAGatttatcagtatcagtatactTAGAGACAAAGGCCTGCAGTTGTTTACAAATATAAAGTTCTATAGACctatatttttggaaaaaaagcttGTCACCTTTTATTTAAGAGGTGGGTGGTAGTAGATACAAGGTTggtactgtttttgtttatcACCTGTTTGTGTAATAAAGAGACCCACAGCTGGTTGAGAGAATGTATGGTGCTCTTGTTGAAATGCACATCATTACCTCAGgtgatatttttaattaaagattCCATGAAGATGCATTCAGTCAGTAATTTAAATACACTGTCAGTTTCTTAAAGATTTGTGGTAACTCTTTTATGTTAtgtccttttttgttttcttcctaGTGGATAATCCCTGAGTTTATATCAATGTTGGATAAGATCTGGATGATATCTATGTCCAAATAAATTGTCAGGCaatgaaaaatacttttttatcaaTGCTATCTTGAGTACACTCTAGGTTCGTCCTGTTTCAATGTGACTGCCTTTATTTGATAATACTCATGTAAAAGAAAGTAATTTGCCATAAGTCCTGCAATAATATCCTATTCATCATTTTATGACTGAGAGCTCAGAGATCAGTGCTACGGTTAGCTACAGGCTTTACACTTTTAGGTATTTTTTTTGCTCTACAGCTAAATATTTTCTATGCGAATATGTGCAATAGCTGGGCAGATGTgtcatttagatttttgtttttctttttaaaatgactgACATTTTGCAGTATCAAGTGGAGACATGTCACCAAGTCCTTTAagcatttaattttctttttacatctGTTTGTGTAACTCTTAAGTTTTgcttatgtttgttttttttgtaataaaaatgtttggtaag

Function

symbol description
pomgnt1 Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including axis; fin bud; myotome; nervous system; and shield. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)).

NR:

description
PREDICTED: protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like isoform X1

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K09666 POMGNT1; beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU158532 False 293 lncRNA 0.49 2 41353501 41354250
TU158550 False 1917 lncRNA 0.38 6 41363708 41367679
XM_022675129.1 True 3448 mRNA 0.43 22 41353518 41367729

Neighbor

gene id symbol gene type direction distance location
prpf38a prpf38a coding upstream 5702 41343422 ~ 41347799 (+)
mpl NA coding upstream 29883 41308576 ~ 41323618 (+)
tie1 tie1,LOC107731644,LOC107684058 coding upstream 48272 41282851 ~ 41305229 (+)
tmem125 tmem125,LOC108440199,LOC107725195,LOC107684333,LOC107551025 coding upstream 137234 41194102 ~ 41216267 (+)
LOC103041612 LOC108440175 coding upstream 227930 41121126 ~ 41125571 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding downstream 118732 41486461 ~ 41801791 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding downstream 722260 42089989 ~ 42099620 (+)
ccdc17 NA coding downstream 734212 42101941 ~ 42113536 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding downstream 849785 42217514 ~ 42270031 (+)
zc3h3 NA coding downstream 1015199 42382928 ~ 42481727 (+)
G117379 NA non-coding upstream 1151 41350951 ~ 41352350 (+)
G117370 NA non-coding upstream 17716 41332201 ~ 41335785 (+)
LOC111193789 NA non-coding upstream 46590 41305323 ~ 41306911 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding upstream 119648 41226175 ~ 41233853 (+)
G117299 NA non-coding upstream 261509 41091501 ~ 41091992 (+)
G117474 NA non-coding downstream 411222 41778951 ~ 41784207 (+)
G117396 NA non-coding downstream 434674 41802403 ~ 41873492 (+)
G117508 mast2 non-coding downstream 524471 41892200 ~ 41897363 (+)
G117530 nasp,LOC107683970,LOC107731628 non-coding downstream 763854 42131583 ~ 42137890 (+)
LOC111193791 NA non-coding downstream 780048 42147777 ~ 42151663 (+)
fam183a NA other upstream 187342 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 544956 40799471 ~ 40808545 (+)
G116997 NA other upstream 1994113 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 2958971 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 3741179 37524851 ~ 37612322 (+)
G117642 NA other downstream 984078 42351807 ~ 42355784 (+)

Expression


Co-expression Network