G117381


Basic Information

Item Value
gene id G117381
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41349497 ~ 41350906 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158541
aatgttgctaccagacgcaatgtccctctctgtgatgttcatgatgcacctgagcctgttgaagaaccagaacaaactctggtgttcttttcaattgttcgaaattatttttgacagcttcatatctgataaatgtttctttgacattaatatacagtgatgaatgacagtgacgtagatgaaaaaatgaatatattatttttgtttgttattgaaatcttttggggggtttatttaatggggtcaagattgtttttatttttacgttagtaaaaggcttaattggtagccaatgtctactttatcactgtaacggttaaacaggtcaagtgcaaaataaaagtaaatgtata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158541 True 353 lncRNA 0.33 2 41349497 41350906

Neighbor

gene id symbol gene type direction distance location
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding downstream 13968 41324722 ~ 41335529 (-)
c13h1orf210 NA coding downstream 88918 41251017 ~ 41260579 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding downstream 99886 41224841 ~ 41249611 (-)
LOC103034848 NA coding downstream 571840 40755348 ~ 40777657 (-)
uhmk1 uhmk1,LOC107692420 coding downstream 712808 40619482 ~ 40636689 (-)
tspan1 NA coding upstream 20130 41371036 ~ 41385641 (-)
LOC111193790 NA coding upstream 230927 41581833 ~ 41582017 (-)
mast2 mast2 coding upstream 530062 41880968 ~ 42081872 (-)
tmem69 tmem69,LOC107579605 coding upstream 732311 42083217 ~ 42085827 (-)
nasp nasp,LOC107551040,LOC107594614 coding upstream 780671 42131577 ~ 42137885 (-)
G117374 prpf38a non-coding downstream 2237 41343493 ~ 41347260 (-)
G117357 NA non-coding downstream 42036 41304537 ~ 41307461 (-)
G117305 NA non-coding downstream 228449 41120752 ~ 41121048 (-)
G117300 NA non-coding downstream 257503 41091474 ~ 41091994 (-)
G117278 NA non-coding downstream 547071 40799599 ~ 40802426 (-)
G117383 pomgnt1 non-coding upstream 2603 41353509 ~ 41359883 (-)
G117387 NA non-coding upstream 67820 41418726 ~ 41418946 (-)
LOC111193695 NA non-coding upstream 111024 41461930 ~ 41486224 (-)
G117496 NA non-coding upstream 449871 41800777 ~ 41801912 (-)
G117567 NA non-coding upstream 665852 42016758 ~ 42019530 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other downstream 331683 40816133 ~ 41017814 (-)
LOC103034527 NA other downstream 579815 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 985537 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 2058469 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 2385803 38953162 ~ 38963694 (-)

Expression


Co-expression Network