G117383 (pomgnt1)


Basic Information

Item Value
gene id G117383
gene name pomgnt1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41353509 ~ 41359883 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158547
gaTCTTAAGCTCAAAAGCTGTCCCAATGTTGTGTGTTTCTTCAGTAATCCCATGAATGGTCAACTGTCTTATCTATGATTTTTTTAGAGTCTGTCTAAAATGTGTATACTCGCCTGGCAGAGTCTTCGGATGGCTCTTTTGTTGGAAAGTTTGTATTTCCATGTTAGGTAGAAACTACGCTGCTGTCTAGGGATGAAGGGCTTGGCCCGTGGGTTGGGCGTCCAGGTGTCCATCCCTTACAACTGCTGCCTGCCGTTACTGGTGTTTATGTGTCGATGCCCCCCATATTTACAgagttattttacattattccGCTAAAGGTTAGCAGTGTTTAGCCGGTTCTCTGCATGTGAAGACTCTGTCCATCAGAGTGAAGGCACCAACTGTGCCATT
>TU158548
CTTCTCGGGTGTGGGCCACTTGGGCTCTAGCTCATCCTTGTAGATGCTTTTTTTCAGCACCCAGCCCAACCCTGGCATACTCTCCACTCTGTAAAGCAGTGAAGGGtcctctgctgtgtgttcatatCCTTGGTCATTCCATGCTGAGATACAATAGAGACTCTCATCTTCATTCAGCAAGTGAATGGTCTGACTAAGAAAGCTGAAGAAATCTATGGAAATGTCCAGATCTTCCTCCAAGACAATGGCAAAGTTTGCATCTGGATGTAGGTTGAATGTGGCAGTCAGGCTGGCTTTATAGTGCTGTGATACACGTGCATTCTTAATGCTGATTGGTGTGTGTTGAACGCCTTTAAGGCCAAAGAGCTCCACCACATCCATAGGttcCTCATAATATCCATCAATGAAAAACAGTGATCATCTGTGGGTTCACACCATGAGAGGACAGGAGTGAGCGCAGCATTCTGTAGAGATAGTTGGGTCTGTTTCCAGCAATGACAGCAACTGGAACATTGTAGACATTATTGTTGGGAAGTGGTTCTGGGTTGAACTCTATGGGTGCTGGATCCTTGCAGCTGCAGATGCTACCGTAGCCTTCCACTTTACTGCAAAACAGCTTCCTCCTACGGTTCAACTCCGTCTCAGCCCAGTGGCACTCTGCTTCTTCAGCAGCAGTGAGCTGAACCTCAGTTTTCAGCAGTACAGGATCTCCCCATGTAGAGAGTGCAGGTGACTTTGAGTGCTTCTCCCCATATACCTGGCCT

Function

symbol description
pomgnt1 Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including axis; fin bud; myotome; nervous system; and shield. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)).

NR:

description
PREDICTED: protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158547 False 393 lncRNA 0.45 2 41353509 41354358
TU158548 True 764 lncRNA 0.48 9 41356722 41359883

Neighbor

gene id symbol gene type direction distance location
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding downstream 17980 41324722 ~ 41335529 (-)
c13h1orf210 NA coding downstream 92930 41251017 ~ 41260579 (-)
LOC103032504 ap1m3,LOC108441657,LOC107724146,LOC107684323,LOC108271949,LOC107692442,LOC106528254 coding downstream 103898 41224841 ~ 41249611 (-)
LOC103034848 NA coding downstream 575852 40755348 ~ 40777657 (-)
uhmk1 uhmk1,LOC107692420 coding downstream 716820 40619482 ~ 40636689 (-)
tspan1 NA coding upstream 11153 41371036 ~ 41385641 (-)
LOC111193790 NA coding upstream 221950 41581833 ~ 41582017 (-)
mast2 mast2 coding upstream 521085 41880968 ~ 42081872 (-)
tmem69 tmem69,LOC107579605 coding upstream 723334 42083217 ~ 42085827 (-)
nasp nasp,LOC107551040,LOC107594614 coding upstream 771694 42131577 ~ 42137885 (-)
G117381 NA non-coding downstream 2603 41349497 ~ 41350906 (-)
G117374 prpf38a non-coding downstream 6249 41343493 ~ 41347260 (-)
G117357 NA non-coding downstream 46048 41304537 ~ 41307461 (-)
G117305 NA non-coding downstream 232461 41120752 ~ 41121048 (-)
G117300 NA non-coding downstream 261515 41091474 ~ 41091994 (-)
G117387 NA non-coding upstream 58843 41418726 ~ 41418946 (-)
LOC111193695 NA non-coding upstream 102047 41461930 ~ 41486224 (-)
G117496 NA non-coding upstream 440894 41800777 ~ 41801912 (-)
G117567 NA non-coding upstream 656875 42016758 ~ 42019530 (-)
G117569 NA non-coding upstream 703329 42063212 ~ 42064008 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other downstream 335695 40816133 ~ 41017814 (-)
LOC103034527 NA other downstream 583827 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 989549 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 2062481 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 2389815 38953162 ~ 38963694 (-)

Expression


Co-expression Network