G117396


Basic Information

Item Value
gene id G117396
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 41802403 ~ 41873492 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158563
TCATCACATCATTATTAGACTTTATGAAGTCAATGGATCCCTGGACCCCTCAGTTCTCTTCTGCTCATATACCATTTTGAGTCCAGGCCCAGATCAAGCCAGTGGCGCCCAGAGCTCTTGACAGAAGCCACATGCTCTTGAGTTATAGATGTTAAAGcatttcttcctctttttattCCCTGCCGCTGCATGCTTGCAGCCTGGCAACTGCCACAGGAGCAACTGAGCTCCTACTGGATCGTTTCTTTGTGGCTCTTGGTGGGGCATAATTAGCTGGGGAAAGAGCAGCGCTGGTGCTTTCCAACTCTCAGTAGGAGTCTGGAGACTGGAGGCTGGGCGGATGGTGGGGGAGTAAGGGTCTAGGGGTTTTAGGGTCTTGAGGTCTCTAGAAGTATGATGATATATCCAACATACTTCACTTATCATCataatcatattattattattattaaaaccctTTTCaacaaaccaatttttttttaaatcgtttTCCCCTCCTCATCTACATAAACAAATAGCAGCAAATCTCCGAACTTCAGAACAGACTGCGTATCGGATCAGATTTCTTTTTGTCCAGCTccctttctttctatctatctatctttctttctttctttccctttcttttttttttcttctacaaAGATCCAGATTGTTCATTTAACCAGGGCCCCTAAGGGGTCCTCTCTCTATTACTTGAACTATAGCATTGCTCACTGTTGAATGTCTTTATattgcatatatacatatattaaagaagAGGAAATCCCTTTTATGACAGGAGTTGATTGAGTTTGAGATATATGTACACGTTGTTTATACACGTTTATTCAGAGACACAGAATTCAAGTGTTTGTTCgttcgttttttttgtttgtttttttttttttttcctctttaagGGAATTTCTTTACTAGAAATATGACTGTTTATTGGATCCTGCTGTCCAGTATTGCACACATTCATTCTTGAAGAGACTTTTTAACGTACGTACACGTAGCGTACAATGCCGGGCAACAGACGCGCTTTGCGTCGTACAACTCACCCTTAAGTTCGTACTCGACATTTACTGAAGAATCGTTTGGGCTGGGCTGTAAATTTTGTGATTTCTTTGTGATTATTATGATCACTGTTCTCCCAGGCATCGAGACCAAAGATTTGAGTTTGAGTTACTTTCTACTAGCTAGTGTTAGTTTGGAAGGGGAATCTTGAGTATttcctgttttgttttaatCCATTGCCTTGCTTCCGTGCAAACTCCAGTCGACTTTTGCGAGTCGCTTTTGCCGTCAAGTTTTCATTGTGAGATCGCTATTTGTCCAGCGAATTAATGGCAACCTTGACTATTATTTGTCTATAATACTGATGGAAGTCATATTCTCCAACAGTACACATATGTTGGCAtgaattctttacatttttgccTTTCAAAAACATTCAGTATTTGTTTTTCTGCTCAAATAAAGTTGGACATTTTCACCAACCCTTTTGTGATATTTAAGAAGGTCAGCTTAGTTAATCCAAGCTGGGTTTTTTTCACATGTTAGAAAGTGCTTGAATAGTTTTGTGTGTGCCATCGGTGTGTTTTCTTGTTCTGACTGTTGCAGACACTCCTGGCTCCACCAAAATCTGGCAATCGcctttctatagtttttttttttctttccagaaCATGGATGTACGTTCAGAGAGGTTTGACCAAGCTGGAGGGGTCAGTTTTCTCTCAGAAATTcattagagagagaaaagtacCCCTTGTCATTTGTGGTTTGTCTCAAAAAAAGCTAATGTGCTCATCATTCTCTGCAGGGCAGAAAGCAGTGGGGGATCGTAGGTTCGTTCCTTGTTTATGCACTCCACAAAGCATGCAATATtccatttcttgttttctttttttaaaggtttcagGGACAAAAATATAAGCATTGCATTGGGGGTTCGTATGAAAGATATGTTtaccagaggagagagaaatgcttgtgcattttgttttgtattgatGTGGGAACGGGAAAAGGGGAACGGGAAACTTACCAGATTTtaagaaaacagaaataaaaagaaacagatcTATGGTGCATTACTTCAGAAGCTCAAAGGGTTTGGGCATGAACCAAAACAACCTTCTTCTCCATTCACCTAGAAGAGTCTGAGTTTTCAGTTTCAGGCCGAGTCGATTAGTTTGAAGACCAGgcttagagttttttttttttttttttcaaggacTGTTAACTAACAATGTCTGTTTCTCTTGGCCCTTCGTGCAGTTCTGCAAAGTTTTATTTGCAGTCAAGTTTGAATATGTGGTGATTCTCATTGGGAGTCTTTTATGTTCTTACCACTGCTGTCACCTCACGATTACCCAGCACAGCTTAATGGAGTAAAGCTtcttattgttaaaaaaaaactaaaaaaatgcaagaaaaaaaagaaaaaacagaaaacaaaaaaaacgtataaagaaaaaaactctcCCTCCCACTTTGACATACGTACAAACCCAGCATGCTTCTTTGGTACTCTTGACTgttgttttgtgtaaaaaagaaaaagttaaaaaaaaaaagaaagaaaaacgtTGAAACGAGAACTGTTATTTGTCTGTTTATGGTGTAGTCAGATATAAATTTTGATATAGCTTAAgaaaacactgcttttttttcagCTCAAATAAGTTTGAACCCTGTGTTTCAGTGGACAATGCAAAGTGATATTGTTCTTAAATACTGAGAATGAGGGTCAACGTCAGCAATAGCAAACAAACCTACCGCAGTGTCGGCACAAGTCGCAAGAGTTCACTAGAGTTTCACAACAACGAAAGGCTCAAAGTTACCCCGACGTTTGAGATGTAAGAGATGAATTTAAATACACACTTTTTCCCACAAAGATCAGTCCACCACCAGCAGCAACATGTTTGTTCTTGTACATCTGTAGACTCAGCTTGAGCAATAAGCCACGGACCCCCAGATCTCCACGTCCAATGACAGAAAcagaatagaaatatatatatatatatacatactatatataatatataatcatgCACAGTCCTCTCTCTCTGGTCAGCATCTCGTCCATTACCTACACTCGGTGCATATCAGTCGTACGGCAGCATCTCCTATTGTTCCTAAAAAACTGGAGAGCGATCTGTGTGGAGAACTCCTCCTTCTCAGTATTTGAATATCATCCTTGCTACAGGCTTATTGATATTCCTCAGTTAtgttttccaccatattttctTGTATCCGTTACAATAGTTTGTATTGGTTGTAGACTCTCCATTTGTTATGAGATGAACTCATGTATATTCTCAATGGAACTCCACCATATTCATTTCTCTtgcagaataaagaaaaaatattttgtccaa
>TU158564
TCATCACATCATTATTAGACTTTATGAAGTCAATGGATCCCTGGACCCCTCAGTTCTCTTCTGCTCATATACCATTTTGAGTCCAGGCCCAGATCAAGCCAGTGGCGCCCAGAGCTCTTGACAGAAGCCACATGCTCTTGAGTTATAGATGTTAAAGcatttcttcctctttttattCCCTGCCGCTGCATGCTTGCAGCCTGGCAACTGCCACAGGAGCAACTGAGCTCCTACTGGATCGTTTCTTTGTGGCTCTTGGTGGGGCATAATTAGCTGGGGAAAGAGCAGCGCTGGTGCTTTCCAACTCTCAGTAGGAGTCTGGAGACTGGAGGCTGGGCGGATGGTGGGGGAGTAAGGGTCTAGGGGTTTTAGGGTCTTGAGGTCTCTAGAAGTATGATGATATATCCAACATACTTCACTTATCATCataatcatattattattattattaaaaccctTTTCaacaaaccaatttttttttaaatcgtttTCCCCTCCTCATCTACATAAACAAATAGCAGCAAATCTCCGAACTTCAGAACAGACTGCGTATCGGATCAGATTTCTTTTTGTCCAGCTccctttctttctatctatctatctttctttctttctttccctttctttttttttttcttctacaaAGATCCAGATTGTTCATTTAACCAGGGCCCCTAAGGGGTCCTCTCTCTATTACTTGAACTATAGCATTGCTCACTGTTGAATGTCTTTATattgcatatatacatatattaaagaagAGGAAATCCCTTTTATGACAGGAGTTGATTGAGTTTGAGATATATGTACACGTTGTTTATACACGTTTATTCAGAGACACAGAATTCAAGTGTTTGTTCgttcgttttttttgtttgtttttttttttttttcctctttaagGGAATTTCTTTACTAGAAATATGACTGTTTATTGGATCCTGCTGTCCAGTATTGCACACATTCATTCTTGAAGAGACTTTTTAACGTACGTACACGTAGCGTACAATGCCGGGCAACAGACGCGCTTTGCGTCGTACAACTCACCCTTAAGTTCGTACTCGACATTTACTGAAGAATCGTTTGGGCTGGGCTGTAAATTTTGTGATTTCTTTGTGATTATTATGATCACTGTTCTCCCAGGCATCGAGACCAAAGATTTGAGTTTGAGTTACTTTCTACTAGCTAGTGTTAGTTTGGAAGGGGAATCTTGAGTATttcctgttttgttttaatCCATTGCCTTGCTTCCGTGCAAACTCCAGTCGACTTTTGCGAGTCGCTTTTGCCGTCAAGTTTTCATTGTGAGATCGCTATTTGTCCAGCGAATTAATGGCAACCTTGACTATTATTTGTCTATAATACTGATGGAAGTCATATTCTCCAACAGTACACATATGTTGGCAtgaattctttacatttttgccTTTCAAAAACATTCAGTATTTGTTTTTCTGCTCAAATAAAGTTGGACATTTTCACCAACCCTTTTGTGATATTTAAGAAGGTCAGCTTAGTTAATCCAAGCTGGGTTTTTTTCACATGTTAGAAAGTGCTTGAATAGTTTTGTGTGTGCCATCGGTGTGTTTTCTTGTTCTGACTGTTGCAGACACTCCTGGCTCCACCAAAATCTGGCAATCGcctttctatagtttttttttttctttccagaaCATGGATGTACGTTCAGAGAGGTTTGACCAAGCTGGAGGGGTCAGTTTTCTCTCAGAAATTcattagagagagaaaagtacCCCTTGTCATTTGTGGTTTGTCTCAAAAAAAGCTAATGTGCTCATCATTCTCTGCAGGGCAGAAAGCAGTGGGGGATCGTAGGTTCGTTCCTTGTTTATGCACTCCACAAAGCATGCAATATtccatttcttgttttctttttttaaaggtttcagGGACAAAAATATAAGCATTGCATTGGGGGTTCGTATGAAAGATATGTTtaccagaggagagagaaatgcttgtgcattttgttttgtattgatGTGGGAACGGGAAAAGGGGAACGGGAAACTTACCAGATTTtaagaaaacagaaataaaaagaaacagatcTATGGTGCATTACTTCAGAAGCTCAAAGGGTTTGGGCATGAACCAAAACAACCTTCTTCTCCATTCACCTAGAAGAGTCTGAGTTTTCAGTTTCAGGCCGAGTCGATTAGTTTGAAGACCAGgcttagagttttttttttttttttttcaaggacTGTTAACTAACAATGTCTGTTTCTCTTGGCCCTTCGTGCAGTTCTGCAAAGTTTTATTTGCAGTCAAGTTTGAATATGTGGTGATTCTCATTGGGAGTCTTTTATGTTCTTACCACTGCTGTCACCTCACGATTACCCAGCACAGCTTAATGGAGTAAAGCTtcttattgttaaaaaaaaactaaaaaaatgcaagaaaaaaaagaaaaaacagaaaacaaaaaaaacgtataaagaaaaaaactctcCCTCCCACTTTGACATACGTACAAACCCAGCATGCTTCTTTGGTACTCTTGACTgttgttttgtgtaaaaaagaaaaagttaaaaaaaaaaagaaagaaaaacgtTGAAACGAGAACTGTTATTTGTCTGTTTATGGTGTAGTCAGATATAAATTTTGATATAGCTTAAgaaaacactgcttttttttcagCTCAAATAAGTTTGAACCCTGTGTTTCAGTGGACAATGCAAAGTGATATTGTTCTTAAATACTGAGAATGAGGGTCAACGTCAGCAATAGCAAACAAACCTACCGCAGTGTCGGCACAAGTCGCAAGAGTTCACTAGAGTTTCACAACAACGAAAGGCTCAAAGTTACCCCGACGTTTGAGATGTAAGAGATGAATTTAAATACACACTTTTTCCCACAAAGATCAGTCCACCACCAGCAGCAACATGTTTGTTCTTGTACATCTGTAGACTCAGCTTGAGCAATAAGCCACGGACCCCCAGATCTCCACGTCCAATGACAGAAAcagaatagaaatatatatatatatatatatatatatatatatactatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158563 True 3371 lncRNA 0.38 2 41802403 41805833
TU158564 False 3042 lncRNA 0.38 3 41802403 41873492

Neighbor

gene id symbol gene type direction distance location
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding upstream 612 41486461 ~ 41801791 (+)
prpf38a prpf38a coding upstream 454604 41343422 ~ 41347799 (+)
mpl NA coding upstream 478785 41308576 ~ 41323618 (+)
tie1 tie1,LOC107731644,LOC107684058 coding upstream 497174 41282851 ~ 41305229 (+)
tmem125 tmem125,LOC108440199,LOC107725195,LOC107684333,LOC107551025 coding upstream 586136 41194102 ~ 41216267 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding downstream 216497 42089989 ~ 42099620 (+)
ccdc17 NA coding downstream 228449 42101941 ~ 42113536 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding downstream 344022 42217514 ~ 42270031 (+)
zc3h3 NA coding downstream 509436 42382928 ~ 42481727 (+)
mafa mafa coding downstream 627411 42500903 ~ 42505218 (+)
G117474 NA non-coding upstream 18196 41778951 ~ 41784207 (+)
G117379 NA non-coding upstream 450053 41350951 ~ 41352350 (+)
G117370 NA non-coding upstream 466618 41332201 ~ 41335785 (+)
LOC111193789 NA non-coding upstream 495492 41305323 ~ 41306911 (+)
G117324 ap1m3,LOC108441657,LOC108271949,LOC103463064,LOC106528254,LOC107724146,LOC103137203 non-coding upstream 568550 41226175 ~ 41233853 (+)
G117508 mast2 non-coding downstream 18708 41892200 ~ 41897363 (+)
G117530 nasp,LOC107683970,LOC107731628 non-coding downstream 258091 42131583 ~ 42137890 (+)
LOC111193791 NA non-coding downstream 274285 42147777 ~ 42151663 (+)
LOC111193792 NA non-coding downstream 398723 42272215 ~ 42275155 (+)
G117641 NA non-coding downstream 476687 42350179 ~ 42350732 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 434674 41353501 ~ 41367729 (+)
fam183a NA other upstream 636244 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 993858 40799471 ~ 40808545 (+)
G116997 NA other upstream 2443015 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 3407873 38390277 ~ 38394530 (+)
G117642 NA other downstream 478315 42351807 ~ 42355784 (+)

Expression


Co-expression Network