G117530 (nasp,LOC107683970,LOC107731628)


Basic Information

Item Value
gene id G117530
gene name nasp,LOC107683970,LOC107731628
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42131583 ~ 42137890 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158715
CTCCTGCTCCATTTTCTCCTGGACTCCATTGCTGGTTGCTGGCAGAGTCACCGCTGCCATTAACTGTGGTCTCCTGTTTGACCTTTTTAGCATCACTGTCCTTTTTTGGGCTCTCGTCTTCTGGTTTCCTCTTCTTACGAACAAGGTGAGAGATATCTGATGCAGCTGCCGAAGATGCACTGTCCGCTGGTTTTACGGCAATCTGGCTGACTGTTGAGGATGAAGATGGGCCCCCATTTTCAGTTGGAAATGCAGAGGATGTAGATGCTCCTCCCAGTGTCTGGTGTATAGCTTCTGATGCTGCAGCTGCTGTCTTCTGACTTTCCTTTGCATCTTCTACCTTTTCAGTAATCTCTGGAAGTAGCTGCTTCAGCTCCTCAAACTCATTCTTTTCTTCCTTTGCTTCCTCAGCACCCTCTGCCTTATTAATTACTTCCTGAAGCATGGCCAATCGGCTCTCAATTACGCTGATTGACTTTGTAAAGTGCTCAATTGCCAGGTTGTACTGAGCTGTGTAGCTAAAAGTTGTGCCCAGCTGGTAATGGGTCTCTGCCAGCAGACGACTGTGAGGCGGCAAATGCTTCAGTTGTAGAGCCAAGCACTCCTTGAAGTCCTCCAGAGCTTGAGGGTAATTacCCGACTCTGCACCAACTTCTCCAAGTTTCAAGAAGATTTGTGCTGCCATTAACTGGTCATCCTTGCTCTCCTTCCTTTGTAAATAACTTTCGCCACTTCCAGCATCTCCCATGCCAACTGAAGATTTCCAACCTCCTCCTCTTCACTCTCCTTATCGTCTTTTCCCTCCCCTTCCTCTTCATCctcatcttcctcttcttcttcgtcGTCAtCTCCACCTTCTTCCTCCATAGGCTCTGGAGCATCTTCACCATCTTTTGGCTCTTCTGTGCTCTTGACATCTTGCTGCACATTCTTCTTAGTCACTGCCTTGTCTTCTTGTTTTGAGGAATCCCCTCCCTCCTCCATCTTGCCTGAATCCTCCACAGCTTTCTCTTCACATTTGGCAGGAGACTTCTTTACCTTACCATCCTCAGCTTTTTCACTTTTGACTAGATGCTCTGTTGTCTTGTTTCCATTTTCAGAAGCTTTCTCATCAGTTTTGACTGAGTCTTTAGCAGTCTTCCCTTGGCTTTCAGCAGCCTTCTCTTCTTTGGCAGGATGCACTGTGGTGTTCTCACCATTTTTAACAGGAGATTTACTCTTCTCTTCCTTTTTGACTGCGGAATCTTCAGCATCTTCCTTTTTTGCTTGCATGTCTCCAGACTCCTTTACCTCTTTCCCATCTTCCTTTGCCTCCTTTTTATCTTCAGAGTCCCTCTTCTCCTCAGACATGGCATCATAAACCTGTTCGCGAAGCTCATCTCTGGTTTTCTCATCCAAGTTGTCTGCACTCTCAATCTTGGAATCATcctgtttctctccctcttcctcagGGACTCCCTCTAAAGCATTCCCCAAGACTGTGTTCTCCATCCTGGCAAGCTCCAATAATGACTTCCCACACAAGAAAAAGGCCTCTCCACATTCATCAGCAGTATCCCCATATTTCTCAGCGAGCATTGCACACGCCTCCTGGAACACACTGACTGCAGACACGACATCACCCATAACTAGGTGTCTGTTTCCTGTGCCAATGAGCTTCTTTGCCTCTTCAGCCACATCTACAGAACTGTCTGCAGCACTGGATGAGCAGGCTTCTCCTCCGTGCTCTCAGCAGTGGACGCGGCGGCCGTCTCTTCTGGCATTTTAACAGTCTGGGAAAAGCCAAGGAAGCGTCTCTGGAAAGAACAGCGCCGTTTACTCCGCGGAACTGGCCTTAAAACAGAAGATGGCAGATCAGCGCGCCCCGAACTTCTCTCCCGCTTTGTTGGCGCCTTTAAATACGGATACAGCGTCCTCACTTCCG
>TU158717
TATGCAAATATCTTTATTGAAACTACTACAATACAAAAGTtggacacacacagaaaaaggtTAATGTCTTATTTACAAAACAAAGAGCTGTTTGTGGAGACTTGAGGCAGGCATGCTGTGCTGGTTGGAAGATCCGTGGTCAGCCAGGAGAAGAACCTCCCATCATGCTGATGTTTCTACAGAGGAAGTGGAATTCACAGGCTTCTTACGAACAAGGTGAGAGATATCTGATGCAGCTGCCGAAGATGCACTGTCCGCTGGTTTTACGGCAATCTGGCTGACTGTTGAGGATGAAGATGGGCCCCCATTTTCAGTTGGAAATGCAGAGGATGTAGATGCTCCTCCCAGTGTCTGGTGTATAGCTTCTGATGCTGCAGCTGCTGTCTTCTGACTTTCCTTTGCATCTTCTACCTTTTCAGTAATCTCTGGAAGTAGCTGCTTCAGCTCCTCAAACTCATTCTTTTCTTCCTTTGCTTCCTCAGCACCCTCTGCCTTATTAATTACTTCCTGAAGCATGGCTAAGAACAACATACATGTTTAAAGACTGTCCTGGCTATACAGTAAAGAGTGCCATACATGTCTTAGGTTGAACACAAGCAAAGAACTCCTTTTACATACCCAATCGGCTCTCAATTACGCTGATTGACTTTGTAAAGTGCTCAATTGCCAGGTTGTACTGAGCTGTGTAGCTAAAAGTTGTGCCCAGCTGGTAATGGGTCTCTGCCAGCAGACGACTGTGAGGCGGCAAATGCTTCAGTTGTAGAGCCAAGCACTCCTTGAAGTCCTCCAGAGCTTGAGGGTAATTacctacaaaaaaaatgcagaatattAGTTAAGGTTTTGTAGGACTAATGAATTTGATAACTAGTTTTACAGGGAAAAGAGGAGACCTCAAAACAGAACTCCTTCAGTGGGCTCTGTGTGCAGTCATGGGCACTCTGCTTCCCCCTTAAATTAGCTTTAACAAGACATACCCGACTCTGCACCAACTTCTCCAAGTTTCAAGAAGATTTGTGCTGCCATTAACTGGTCATCCTTGCTCTCCTTCCTTTTGTAAATAACTTTCGCCACTTCCAGCATCTCCCATGCCAACTGAAGATTTCCAACCTCCTCCTCTTCACTCTCCTACAGGAAGAAGTTTCAaggtcattattttattttatattataaacacactgacttaattaaaatgaataaagtcAAACCTTATCGTCTTTTCCCTCCCCTTCCTCTTCATCctcatcttcctcttcttcttcgtcGTCAtctaaaatagtttCTCCACCTTCTTCCTCCATAGGCTCTGGAGCATCTTCACCATCTTTTGGCTCTTCTGTGCTCTTGACATCTTGCTGCACATTCTTCTTAGTCACTGCCTTGTCTTCTTGTTTTGAGGAATCCCCTCCCTCCTCCATCTTGCCTGAATCCTCCACAGCTTTCTCTTCACATTTGGCAGGAGACTTCTTTACCTTACCATCCTCAGCTTTTTCACTTTTGACTAGATGCTCTGTTGTCTTGTTTCCATTTTCAGAAGCTTTCTCATCAGTTTTGACTGAGTCTTTAGCAGTCTTCCCTTGGCTTTCAGCAGCCTTCTCTTCTTTGGCAGGATGCACTGTGGTGTTCTCACCATTTTTAACAGGAGATTTACTCTTCTCTTCCTTTTTGACTGCGGAATCTTCAGCATCTTCCTTTTTTGCTTGCATGTCTCCAGACTCCTTTACCTCTTTCCCATCTTCCTTTGCCTCCTTTTTATCTTCAGAGTCCCTCTTCTCCTCAGACATGGCATCATAAACCTGTTCGCGAAGCTCATCTCTGGTTTTCTCATCCAAGTTGTCTGCACTCTCAATCTTGGAATCATcctgtttctctccctcttcctcagGGACTCCCTCTAAAGCATTCCCCAAGACTGTGTTCTCCATCCTGGCAAGCTCCAATAATGACTTCCCACACAAGAAAAAGGCCTCTCCACATTCATCAGCAGTATCCCCATATTTCTCAGCGAGCATTGCACACGCCTCCTGGAACACACTGACTGCAGACACGACATCACCCATAACTAGGTGTCTGTTTCCTGTGCCAATGAGCTTCTTTGCCTCTTCAGCCACATCTACAGAACTGTCTGCAGCACTGGATGAGCAGGCTTCTCCTCCGTGCTCTCAGCAGTGGACGCGGCGGCCGTCTCTTCTGGCATTTTAACAGTCTGGGAAAAGCCAAGGAAGCGTCTCTGGAAAGAACAGCGCCGTTTACTCCGCGGAACTGGCCTTAAAACAGAAGATGGCAGATCAGCGCGCCCCGAACTTCTCTCCCGCTTTGTTGGCGCCTTTAAATACGGATACAGCGTCCTCACTTCCG

Function

symbol description
nasp Predicted to enable histone binding activity. Predicted to be involved in CENP-A containing nucleosome assembly and DNA replication-dependent nucleosome assembly. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Is expressed in several structures, including eye; immature eye; pectoral fin; pharyngeal arch; and ventricular zone. Orthologous to human NASP (nuclear autoantigenic sperm protein).

NR:

description
PREDICTED: nuclear autoantigenic sperm protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158715 False 1924 lncRNA 0.48 14 42132114 42137890
TU158717 True 2355 lncRNA 0.45 11 42131583 42137890

Neighbor

gene id symbol gene type direction distance location
ccdc17 NA coding upstream 18047 42101941 ~ 42113536 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding upstream 31963 42089989 ~ 42099620 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding upstream 329792 41486461 ~ 41801791 (+)
prpf38a prpf38a coding upstream 783784 41343422 ~ 41347799 (+)
mpl NA coding upstream 807965 41308576 ~ 41323618 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding downstream 79624 42217514 ~ 42270031 (+)
zc3h3 NA coding downstream 245038 42382928 ~ 42481727 (+)
mafa mafa coding downstream 363013 42500903 ~ 42505218 (+)
usp1 usp1 coding downstream 599680 42737570 ~ 42745578 (+)
angptl3 angptl3 coding downstream 657899 42795789 ~ 42800804 (+)
G117508 mast2 non-coding upstream 234220 41892200 ~ 41897363 (+)
G117396 NA non-coding upstream 258091 41802403 ~ 41873492 (+)
G117474 NA non-coding upstream 347376 41778951 ~ 41784207 (+)
G117379 NA non-coding upstream 779233 41350951 ~ 41352350 (+)
G117370 NA non-coding upstream 795798 41332201 ~ 41335785 (+)
LOC111193791 NA non-coding downstream 9887 42147777 ~ 42151663 (+)
LOC111193792 NA non-coding downstream 134325 42272215 ~ 42275155 (+)
G117641 NA non-coding downstream 212289 42350179 ~ 42350732 (+)
G117647 NA non-coding downstream 230615 42368505 ~ 42436537 (+)
LOC111193697 NA non-coding downstream 499294 42637184 ~ 42638504 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 763854 41353501 ~ 41367729 (+)
fam183a NA other upstream 965424 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 1323038 40799471 ~ 40808545 (+)
G116997 NA other upstream 2772195 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 3737053 38390277 ~ 38394530 (+)
G117642 NA other downstream 213917 42351807 ~ 42355784 (+)

Expression


Co-expression Network