G117642


Basic Information

Item Value
gene id G117642
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42351807 ~ 42355784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158846
acgtagttcatttgttagagttcatttgtaacattctaACATTTAAGGGGTTTTCATCACAAATTGCAGCCAatggctactttccttactgagcagTTGGCAACACTATTCTCCAACCCGTCCCTTCCAGCCAGCCTTTCTCCTTCCTTTACTCCGTCAATTCTCTTCCCGCCTCCTCTCTCGCCGTTTCTCACCGGGCTGCAGCACCCGCTCAGCTCCTTGCTGGAGCTTCATGACCTTCATTCTCTATCTACAGCGCCGCCCCCTCTCAGCTCGCGCTGCGGTTCATCTCCAACACTGGAACCCTGCTACATTCCAAGACGCCCCGGATCTGGAACTTCATTGACGTATGTTTGCGGGACGAAGCTCCCCATCCCGCGATGGGCCTGGCTGTCTAAGGCTGACGTGGTTTCGGCTTTCAAAATCCTCCCTCTCCATCCTGACTCCTGGCGCCTTTTCAGAGTCCGTTTTTCAGTTCACCTTGCTTCGGGTGCAAAGTAACCCCAAGCTTCGATTCCTTTGCTAAGGCGCTCTGCTGGATTTGCTTAACACGGGCCCCAGTTCGTGCTCCACCTCCTGGGTAACTTCGTCGTCGGTCCTCCTTCCTCGCCCCTCTTGATGGGTCTTGAAGCCACGACCAGCGCTTTCACTCGCCTCCGTGCCCCGCCGTCGGAGAACTCCGTTGGTCCCTCCACATCTCTCGAGTTTCTTGGGATCTTTCTGGACTCCGCCTCCTTTCAAGTCTCCCCGCCCGTACCTAGCACCGTCTTTCCCCCCCCCCCTCGGCCACTTTATTCACAACCCAAAATCTAACCCAGGGTCGTTCTTTCATTTCCCGCCTCCTCCGCTTGGCTTTTCGTCCGAGCCCTCCACCATTCGTTATGCTCAACTGATACTGCACGTCAGAGCTCCATTTCTGGCTGTGCCTCCTCTGCAATCGACCGGGTTTTTCTTCTACGCCAACGCAGCTTCCAGCTCTTTTGATATCAAGCTATTCACAGATGCCACTCCTTCCTCTGGTCGCTTCTGCTTGGCCGGAGAACTTCATGTGCTCCGCCGCGCGATTCTTCTGCGCTCTCTGGACTTATATGCGGTCCTCGTCGCTGCCCTCCTTTGGGGACATGAATGGTCAGGAAAATCAATTTTACTCCATTCAGACAATCTCGCCGCGGTCCACATCAACAAAAGTCGATCAAAATCGCTAGACATAATGCCTTTTATCCGTCGCCTCACTTGGCACTCCAGTAAGCATCAGTTTATAATTAAAGCTGTCCACATCCCAGGTTTATCCAACTCTATTGctgactctctttctcgctttcaATTCCAGAAATTCAGATCCTTGGCTCCGCATGCAGACTGCAACCCAACGCCGGTACCTCCATTTTCACTAACTACACTACACCTAACCCCCGTCTGAACGAACTAATCCTCCAAGCACAACAAACCATCCTTTCAGCCGTTTCCCCACAGACACTCTCTACTTACTGGTCAAGCTGGAAAGCATACAAAAATTTCCACTCCACACATAATATATCTTTCCCTTCTCATCATCCATCCGTAATAGCAGCTTATATTACTTTCATTCACACTCAACATTCAGCCCGTTCCTCATCACTCAGAGTCCATCTGGCAGCTATCAATTTTTTCACTAAACTAATTACTGGCATACCACACCCTTCCTCTAATCACCCTCAAATTTCCCTTCTCCTGAAAGGaatccaaaaatcagaaacTCCATACTCACACGAACGAGCTCCCATCTCACCAGAAATCCTCCATCGTTGCATTCAAACCCTCCGATCAGGCTTTTACCCTCCGACAACATCCTCCACGCTCCAATCGCTATTTCTCCTGGCATACTTCGGATTCCTCAGATGCTCAGAATTCACTTCACTAAAAATCTCCCTCAACTCCTTTTCATACGCCCTCATATCAGATCTCAGCATCCTGGACTCGGATACTCTCACCTTTAAAATCAAGCGAAGCAAAACTGACCAACTTGGCAAAACCACGATCCTCCATCTGTTTAAACTTGACTCACCCCTCAGCCCGTGCGAACCACTCGTCCACCACCTAAATCTCCGGCTCTCTCAACAAGCCTCACCTTCGGATACTCTGTTCACTACGGAATCTGGTAGTATAATCACAAGGCACTGGTTCCACACACATTTCCGCCGCATCCTTTCAGTCAACGGTTACTCACCAGACCAATTCTCCGCCCACTCATTCCGCATCGGTGCAGCATCCAACGCCTCCAGACAAGGAATCCCCGAGCACGTCATCAAGCTTCTCGGACGGTGGTCTTCTCAGGCGTACCACTTATACATCCGTTCCAAACCAGACGATTTGAGACAGGCTCATCTCAAACTAGCTTCATTATAAGCTCCATAttttggggatataactgcacgcttcttcagcacgcagttcagaactccagcccaaatttccccgagttccctccccttttttcttcctccttttctacttctataaggcgtggtccgcacttagcaaaatgatgttatgtaataacaaaagtttgggagaaggaccacgcccgaactctacgttctaactccaccccgtatcaatcaaccgtcctataaatacctcccctaactaactacctctcgtgacgaaaacttcgcaacccacctcctccccaacaaccccctttttttctactcttccacttctcattaaataaaaagggggggatataactgcacgcttcttcagcacgcagttcagaactccagcccaaatttccccgagttccctccccttttttcttcctcctttt
>TU158848
acgtagttcatttgttagagttcatttgtaacattctaACATTTAAGGGGTTTTCATCACAAATTGCAGCCAatggctactttccttactgagcagTTGGCAACACTATTCTCCAACCCGTCCCTTCCAGCCAGCCTTTCTCCTTCCTTTACTCCGTCAATTCTCTTCCCGCCTCCTCTCTCGCCGTTTCTCACCGGGCTGCAGCACCCGCTCAGCTCCTTGCTGGAGCTTCATGACCTTCATTCTCTATCTACAGCGCCGCCCCCTCTCAGCTCGCGCTGCGGTTCATCTCCAACACTGGAACCCTGCTACATTCCAAGACGCCCCGGATCTGGAACTTCATTGACGTATGTTTGCGGGACGAAGCTCCCCATCCCGCGATGGGCCTGGCTGTCTAAGGCTGACGTGGTTTCGGCTTTCAAAATCCTCCCTCTCCATCCTGACTCCTGGCGCCTTTTCAGAGTCCGTTTTTCAGTTCACCTTGCTTCGGGTGCAAAGTAACCCCAAGCTTCGATTCCTTTGCTAAGGCGCTCTGCTGGATTTGCTTAACACGGGCCCCAGTTCGTGCTCCACCTCCTGGGTAACTTCGTCGTCGGTCCTCCTTCCTCGCCCCTCTTGATGGGTCTTGAAGCCACGACCAGCGCTTTCACTCGCCTCCGTGCCCCGCCGTCGGAGAACTCCGTTGGTCCCTCCACATCTCTCGAGTTTCTTGGGATCTTTCTGGACTCCGCCTCCTTTCAAGTCTCCCCGCCCGTACCTAGCACCGTCTTTCCCCCCTCGGCCACTTTATTCACAACCCAAAATCTAACCCAGGGTCGTTCTTTCATTTCCCGCCTCCTCCGCTTGGCTTTTCGTCCGAGCCCTCCACCATTCGTTATGCTCAACTGATACTGCACGTCAGAGCTCCATTTCTGGCTGTGCCTCCTCTGCAATCGACCGGGTTTTTCTTCTACGCCAACGCAGCTTCCAGCTCTTTTGATATCAAGCTATTCACAGATGCCACTCCTTCCTCTGGTCGCTTCTGCTTGGCCGGAGAACTTCATGTGCTCCGCCGCGCGATTCTTCTGCGCTCTCTGGACTTATATGCGGTCCTCGTCGCTGCCCTCCTTTGGGGACATGAATGGTCAGGAAAATCAATTTTACTCCATTCAGACAATCTCGCCGCGGTCCACATCAACAAAAGTCGATCAAAATCGCTAGACATAATGCCTTTTATCCGTCGCCTCACTTGGCACTCCAGTAAGCATCAGTTTATAATTAAAGCTGTCCACATCCCAGGTTTATCCAACTCTATTGctgactctctttctcgctttcaATTCCAGAAATTCAGATCCTTGGCTCCGCATGCAGACTGCAACCCAACGCCGGTACCTCCATTTTCACTAACTACACTACACCTAACCCCCGTCTGAACGAACTAATCCTCCAAGCACAACAAACCATCCTTTCAGCCGTTTCCCCACAGACACTCTCTACTTACTGGTCAAGCTGGAAAGCATACAAAAATTTCCACTCCACACATAATATATCTTTCCCTTCTCATCATCCATCCGTAATAGCAGCTTATATTACTTTCATTCACACTCAACATTCAGCCCGTTCCTCATCACTCAGAGTCCATCTGGCAGCTATCAATTTTTTCACTAAACTAATTACTGGCATACCACACCCTTCCTCTAATCACCCTCAAATTTCCCTTCTCCTGAAAGGaatccaaaaatcagaaacTCCATACTCACACGAACGAGCTCCCATCTCACCAGAAATCCTCCATCGTTGCATTCAAACCCTCCGATCAGGCTTTTACCCTCCGACAACATCCTCCACGCTCCAATCGCTATTTCTCCTGGCATACTTCGGATTCCTCAGATGCTCAGAATTCACTTCACTAAAAATCTCCCTCAACTCCTTTTCATACGCCCTCATATCAGATCTCAGCATCCTGGACTCGGATACTCTCACCTTTAAAATCAAGCGAAGCAAAACTGACCAACTTGGCAAAACCACGATCCTCCATCTGTTTAAACTTGACTCACCCCTCAGCCCGTGCGAACCACTCGTCCACCACCTAAATCTCCGGCTCTCTCAACAAGCCTCACCTTCGGATACTCTGTTCACTACGGAATCTGGTAGTATAATCACAAGGCACTGGTTCCACACACATTTCCGCCGCATCCTTTCAGTCAACGGTTACTCACCAGACCAATTCTCCGCCCACTCATTCCGCATCGGTGCAGCATCCAACGCCTCCAGACAAGGAATCCCCGAGCACGTCATCAAGCTTCTCGGACGGTGGTCTTCTCAGGCGTACCACTTATACATCCGTTCCAAACCAGACGATTTGAGACAGGCTCATCTCAAACTAGCTTCATTATAAGCTCCATAttttggggatataactgcacgcttcttcagcacgcagttcagaactccagcccaaatttccccgagttccctccccttttttcttcctccttttctacttctataaggcgtggtccgcacttagcaaaatgatgttatgtaataacaaaagtttgggagaaggaccacgcccgaactctacgttctaactccaccccgtatcaatcaaccgtcctataaatacctcccctaactaactacctctcgtgacgaaaacttcgcaacccacctcctccccaacaaccccctttttttctactcttccacttctcattaaataaaaagggggggatataactgcacgcttcttcagcacgcagttcagaactccagcccaaatttccccgagttccctccccttttttcttcctcctttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158846 True 2809 TUCP 0.50 2 42351807 42355784
TU158848 False 2804 TUCP 0.50 2 42351807 42355784

Neighbor

gene id symbol gene type direction distance location
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding upstream 81776 42217514 ~ 42270031 (+)
ccdc17 NA coding upstream 238271 42101941 ~ 42113536 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding upstream 252187 42089989 ~ 42099620 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding upstream 550016 41486461 ~ 41801791 (+)
prpf38a prpf38a coding upstream 1004008 41343422 ~ 41347799 (+)
zc3h3 NA coding downstream 27144 42382928 ~ 42481727 (+)
mafa mafa coding downstream 145119 42500903 ~ 42505218 (+)
usp1 usp1 coding downstream 381786 42737570 ~ 42745578 (+)
angptl3 angptl3 coding downstream 440005 42795789 ~ 42800804 (+)
atg4c atg4c,LOC107704517 coding downstream 471202 42826986 ~ 42844095 (+)
G117641 NA non-coding upstream 1075 42350179 ~ 42350732 (+)
LOC111193792 NA non-coding upstream 76652 42272215 ~ 42275155 (+)
LOC111193791 NA non-coding upstream 200144 42147777 ~ 42151663 (+)
G117530 nasp,LOC107683970,LOC107731628 non-coding upstream 213917 42131583 ~ 42137890 (+)
G117508 mast2 non-coding upstream 454444 41892200 ~ 41897363 (+)
G117647 NA non-coding downstream 12721 42368505 ~ 42436537 (+)
LOC111193697 NA non-coding downstream 281400 42637184 ~ 42638504 (+)
G117704 dock7 non-coding downstream 393334 42749118 ~ 42751310 (+)
G117739 NA non-coding downstream 453695 42809479 ~ 42811563 (+)
G117743 NA non-coding downstream 489783 42845567 ~ 42846372 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 984078 41353501 ~ 41367729 (+)
fam183a NA other upstream 1185648 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 1543262 40799471 ~ 40808545 (+)
G116997 NA other upstream 2992419 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 3957277 38390277 ~ 38394530 (+)

Expression


Co-expression Network