G117647


Basic Information

Item Value
gene id G117647
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42368505 ~ 42436537 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158859
gtcagggttgagtagaatttctaagttgtaaaatcaatcatgggtaagcagcgcgacctctcaaccggaatagtggctcaaattcaagcccttcgccaacaaggcttgacccaaactaaaattgctgagcagctcggcatcagccagtcttccgtctgcaaagctctcaagaaaaactgcagcaagcgcaccaactgttccggcgtccgaaaaacaacaagcagctgagaaagatcgcagtcagcaaccggttcaagtccacttccgagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158859 True 270 lncRNA 0.50 2 42368505 42436537

Neighbor

gene id symbol gene type direction distance location
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding upstream 98474 42217514 ~ 42270031 (+)
ccdc17 NA coding upstream 254969 42101941 ~ 42113536 (+)
gpbp1l1 gpbp1l1,LOC107731630,LOC107551044,LOC107725200 coding upstream 268885 42089989 ~ 42099620 (+)
pik3r3 pik3r3,LOC107692397,LOC107717145,LOC107594617,LOC106584012,LOC107556985 coding upstream 566714 41486461 ~ 41801791 (+)
prpf38a prpf38a coding upstream 1020706 41343422 ~ 41347799 (+)
mafa mafa coding downstream 64366 42500903 ~ 42505218 (+)
usp1 usp1 coding downstream 301033 42737570 ~ 42745578 (+)
angptl3 angptl3 coding downstream 359252 42795789 ~ 42800804 (+)
atg4c atg4c,LOC107704517 coding downstream 390449 42826986 ~ 42844095 (+)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 815045 43251582 ~ 43312069 (+)
G117641 NA non-coding upstream 17773 42350179 ~ 42350732 (+)
LOC111193792 NA non-coding upstream 93350 42272215 ~ 42275155 (+)
LOC111193791 NA non-coding upstream 216842 42147777 ~ 42151663 (+)
G117530 nasp,LOC107683970,LOC107731628 non-coding upstream 230615 42131583 ~ 42137890 (+)
G117508 mast2 non-coding upstream 471142 41892200 ~ 41897363 (+)
LOC111193697 NA non-coding downstream 200647 42637184 ~ 42638504 (+)
G117704 dock7 non-coding downstream 312581 42749118 ~ 42751310 (+)
G117739 NA non-coding downstream 372942 42809479 ~ 42811563 (+)
G117743 NA non-coding downstream 409030 42845567 ~ 42846372 (+)
G117759 NA non-coding downstream 682004 43118541 ~ 43119083 (+)
G117642 NA other upstream 12721 42351807 ~ 42355784 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 1000776 41353501 ~ 41367729 (+)
fam183a NA other upstream 1202346 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 1559960 40799471 ~ 40808545 (+)
G116997 NA other upstream 3009117 39358871 ~ 39359388 (+)

Expression


Co-expression Network