G117660


Basic Information

Item Value
gene id G117660
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42350120 ~ 42351195 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158872
GGCGAATTTGGTGCCGCGCCAGGGGCGCGAGAGCTGCAGCGGCAGCGAGTTGAGCGGGTGACGTCATCAGGCCGCGACGCCGGTGCGGCTCATGTGCGCTGTTCAGAGGTCCAGTGAAAAGTTCCGCTTTTGGAGCAGAACGGGGGAAAGGGACGCCGCGGCCCTTCAAAAACCCGCTGCAGCTTAACAACAGTCCAATCGGACATGCGAGAGAGGGGCCCAGGGCCGGCGAGGCCGGCCGAGGAAGACGGGCGTCCGGAGCGGCGAGCCCGCGCAGGaggagtaggggaagggggagaagagcggcgggagtgccgagatccgggggtgcactggtgaggacgaccgacccgggaggaagaataagcagtatCCGGAGTAGAacaggagtagccggaatggagattacggaattcagacgacgagcccggcgaggcggagtaggggaagggggagaagagcggcgggagtgccgagatccgggggtgcactggtgaggacgaccgacccgggaggaagaataagcagtagccggagtagaaccaggagtagccggaatggagattacggaattcagacgacgagcccggcgaggcggagtaggggaagggggagaagagcggcgggagtgccgagatccgggggtgcactggtgaggacgaccgacccgggaggaagaataagcagtagccggagtagaaccaggagtagccggaatggagattacggaattcagacgacgagcccggcgaggtggagCAGGAGTGGAGACAGGCTGGCCAGGAGGGAAGAGGTCCTCGTCGGAGGCGGTGAGTTAAAGGTCCATGACGGAGaacaagctaatgctagcaggcGGGTGCGGCAGATTCGACTGATGCGAAgttttcgtcacgagaggtagttagttaggggaggtatttataggacggttgattgatacggggtggagttagaacgtagagttcgggcgtggtccttctcccaaacttttgttattacataacatcatttagagcatttatttgcagaaaatgagaaatggctgaaataacaaagaagatgcagagcttttagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158872 True 1076 lncRNA 0.59 1 42350120 42351195

Neighbor

gene id symbol gene type direction distance location
LOC103030126 LOC103030126,LOC108440237,LOC108271568,LOC107692395 coding downstream 14996 42276265 ~ 42335124 (-)
akr1a1 akr1a1,akr1a1b,LOC107731642 coding downstream 198172 42139364 ~ 42151948 (-)
nasp nasp,LOC107551040,LOC107594614 coding downstream 212235 42131577 ~ 42137885 (-)
tmem69 tmem69,LOC107579605 coding downstream 264293 42083217 ~ 42085827 (-)
mast2 mast2 coding downstream 268248 41880968 ~ 42081872 (-)
LOC103033504 NA coding upstream 10541 42361736 ~ 42381697 (-)
LOC107197605 NA coding upstream 301338 42652533 ~ 42656081 (-)
kank4 kank4,LOC107731645,LOC107704518,LOC107692389,LOC107556542,LOC107591186 coding upstream 306763 42657958 ~ 42728407 (-)
dock7 dock7 coding upstream 394425 42745620 ~ 42826931 (-)
jak1 jak1,LOC107556544,LOC107659055,LOC107739023,LOC107709186 coding upstream 1216534 43567729 ~ 43619228 (-)
G117623 NA non-coding downstream 133104 42216458 ~ 42217016 (-)
G117578 NA non-coding downstream 237061 42097731 ~ 42113059 (-)
G117569 NA non-coding downstream 286112 42063212 ~ 42064008 (-)
G117567 NA non-coding downstream 330590 42016758 ~ 42019530 (-)
G117496 NA non-coding downstream 548208 41800777 ~ 41801912 (-)
G117662 NA non-coding upstream 17310 42368505 ~ 42436537 (-)
G117811 NA non-coding upstream 875359 43226554 ~ 43232574 (-)
G117954 NA non-coding upstream 1086927 43438122 ~ 43438335 (-)
LOC111193793 NA non-coding upstream 1091657 43442852 ~ 43449854 (-)
G117963 NA non-coding upstream 1236307 43587502 ~ 43850446 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other downstream 1332306 40816133 ~ 41017814 (-)
LOC103034527 NA other downstream 1580438 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 1986160 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 3059092 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 3386426 38953162 ~ 38963694 (-)

Expression


Co-expression Network