G117704 (dock7)


Basic Information

Item Value
gene id G117704
gene name dock7
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42749118 ~ 42751310 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU158931
GGCTTTCATTAGCACATAAAGACCATGTCCCTGCAAACAATGAGCCAAAAAAGCTCTCGATTGAATCATGTTGTAAACACGGTTGAACTCAGGTTACCTCCTCCTTGTGGATGATGTTGATGCGGGTTTTGATATAGGGGAAGGCGTGGCTGGTGGTGAGAATGGTCTTGCGCTTGTACTGCTCGTGCAGGTCTCCGTGCGCTCGGCCATCCAGCGTGAACGGAGTACAGTAAACAAAGCGGCGCAGGTTGTAGTTCTTGTCGAAATACGTGATGCGGTCTTTCATCTCGTACGTGTCAAAGTACGGCTCCACATACGTGATCTGAATGAACGCCTTATTTGGATCCAGTTTACATTTGTCCACTGGATTGGAGTCTTTAATGACTTCAACCTGATCCTCTCCAAATCTCTCCCCATAGAAACCCTCAAGCCGGTGTGAGATCTCAGCCAGTTTAGTGATGGCCGGCTCTTTGTATACAAACTCCTGCTCATCCAAGTCACCAAATTTAGAACCATAAAAGCCAACTCTGAAGTAAGTACCAAACATCCGCTTTCCATCCTGCAACAAACAGTCAGTAATTAGCACAAACATTCCCACCCCTTCATCCACACTTCATTACAGACCTGTTCTACTAATAACAGTGGTGAAAAACTATGATATTGTAAAGTAAATGACGGTTATTCTGACTGAGACTGAGAGGATAAAAGTTCATGTTGACTTGGCACCagattatcagactgta

Function

symbol description
dock7 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Is expressed in central nervous system; optic vesicle; and retina. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 23. Orthologous to human DOCK7 (dedicator of cytokinesis 7).

NR:

description
PREDICTED: uncharacterized protein LOC106578542 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU158931 True 743 lncRNA 0.45 3 42749118 42751310

Neighbor

gene id symbol gene type direction distance location
usp1 usp1 coding upstream 3540 42737570 ~ 42745578 (+)
mafa mafa coding upstream 243900 42500903 ~ 42505218 (+)
zc3h3 NA coding upstream 267391 42382928 ~ 42481727 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding upstream 479087 42217514 ~ 42270031 (+)
ccdc17 NA coding upstream 635582 42101941 ~ 42113536 (+)
angptl3 angptl3 coding downstream 44479 42795789 ~ 42800804 (+)
atg4c atg4c,LOC107704517 coding downstream 75676 42826986 ~ 42844095 (+)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 500272 43251582 ~ 43312069 (+)
cachd1 cachd1,LOC107692379,LOC107556548 coding downstream 587132 43338442 ~ 43437797 (+)
raver2 LOC108412528,LOC106024416 coding downstream 698462 43449772 ~ 43558728 (+)
LOC111193697 NA non-coding upstream 110614 42637184 ~ 42638504 (+)
G117647 NA non-coding upstream 312581 42368505 ~ 42436537 (+)
G117641 NA non-coding upstream 398386 42350179 ~ 42350732 (+)
LOC111193792 NA non-coding upstream 473963 42272215 ~ 42275155 (+)
LOC111193791 NA non-coding upstream 597455 42147777 ~ 42151663 (+)
G117739 NA non-coding downstream 58169 42809479 ~ 42811563 (+)
G117743 NA non-coding downstream 94257 42845567 ~ 42846372 (+)
G117759 NA non-coding downstream 367231 43118541 ~ 43119083 (+)
G117787 NA non-coding downstream 418926 43170236 ~ 43170687 (+)
G117806 NA non-coding downstream 470838 43222148 ~ 43222777 (+)
G117642 NA other upstream 393334 42351807 ~ 42355784 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 1381389 41353501 ~ 41367729 (+)
fam183a NA other upstream 1582959 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 1940573 40799471 ~ 40808545 (+)
G116997 NA other upstream 3389730 39358871 ~ 39359388 (+)

Expression


Co-expression Network