G117739


Basic Information

Item Value
gene id G117739
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42809479 ~ 42811563 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU159002
CTTTATAACCAGGAAGACATCTTGGGAGGGGTAAGTGATGGAGAAGACGGCGGAGCGAGCTAGGGTAGAAATAGCAGCTGTCTGGATATGAGGACGCAGGAGAGATTTGGTCTGCTCGGAGTTCAGGTCAAAGAAAAAGTTTTCTGATATCTTTTCTTCTCCTTGACATCGTATAAGGCCAAACTTGCGAATATTGGCTCGATTTCAATCTCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159002 True 215 lncRNA 0.45 2 42809479 42811563

Neighbor

gene id symbol gene type direction distance location
angptl3 angptl3 coding upstream 8675 42795789 ~ 42800804 (+)
usp1 usp1 coding upstream 63901 42737570 ~ 42745578 (+)
mafa mafa coding upstream 304261 42500903 ~ 42505218 (+)
zc3h3 NA coding upstream 327752 42382928 ~ 42481727 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding upstream 539448 42217514 ~ 42270031 (+)
atg4c atg4c,LOC107704517 coding downstream 15423 42826986 ~ 42844095 (+)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 440019 43251582 ~ 43312069 (+)
cachd1 cachd1,LOC107692379,LOC107556548 coding downstream 526879 43338442 ~ 43437797 (+)
raver2 LOC108412528,LOC106024416 coding downstream 638209 43449772 ~ 43558728 (+)
ak4 ak4,LOC107692375,LOC107590615,LOC107659053,LOC107591174 coding downstream 815665 43627228 ~ 43642767 (+)
G117704 dock7 non-coding upstream 58169 42749118 ~ 42751310 (+)
LOC111193697 NA non-coding upstream 170975 42637184 ~ 42638504 (+)
G117647 NA non-coding upstream 372942 42368505 ~ 42436537 (+)
G117641 NA non-coding upstream 458747 42350179 ~ 42350732 (+)
LOC111193792 NA non-coding upstream 534324 42272215 ~ 42275155 (+)
G117743 NA non-coding downstream 34004 42845567 ~ 42846372 (+)
G117759 NA non-coding downstream 306978 43118541 ~ 43119083 (+)
G117787 NA non-coding downstream 358673 43170236 ~ 43170687 (+)
G117806 NA non-coding downstream 410585 43222148 ~ 43222777 (+)
G117807 NA non-coding downstream 411948 43223511 ~ 43223787 (+)
G117642 NA other upstream 453695 42351807 ~ 42355784 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 1441750 41353501 ~ 41367729 (+)
fam183a NA other upstream 1643320 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 2000934 40799471 ~ 40808545 (+)
G116997 NA other upstream 3450091 39358871 ~ 39359388 (+)

Expression


Co-expression Network