G117743


Basic Information

Item Value
gene id G117743
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42845567 ~ 42846372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU159008
tttttaatcacagtttgcatcttggcatctcctccaccagtcttacacactgcttttgaaaaactttatgccactcctggtgcaaaagtttaagcagttcagcttggtttgatggcttgtgatcatccatcttcctcgtgAGTATaatcaatttggtaaaaaaataaaaagtagtctcttttttttccagagctgtatatgtattatgattgtttaaattaattgcatttaaattaaattaaattgatcagatctgagtaaaagaagatgtttacattttatgcAGTTACGTATAACAGTAAAATCTAATGAGAGAGTAAAACACTGCTCTCTAGTGGGAGGTGTTTGAACACAACACAGAGTGAACCTCTGTCTGCAACCAATCTCTAcatataaactaataattaaaaatctatgctgtgtttttttttaaaacagatacagtattgcaaaacaagaTATTGCTAATTAAGAGCTTGAAGTTGTAAGGCATGATAGAAAAAGAAACCTCTGAAATGTGCGGGGCAGGGTGTCCTCCAGGACTAGGATTGGGTTTTTTACCCCTGGTTTAAACcaaattgtttgtttatttgatatCACACAAGCTGTAACACTAGATCTTGTTCACGTTTTGACACAGGTTTGGTACTTTAATATTGCcttctgctgtttttaataAGGGCTAATGATTATCTCACAGACTACCAATAGATAAAGTTCTCACACATGGCCATTAATAtagtgttgtttgttttttttgttttgatttgatttgcaAATGCTGGGATCGTGAATGatgtacatta
>TU159010
aaattgatcagatctgagtaaaagaagatgtttacattttatgcAGTTACGTATAACAGTAAAATCTAATGAGAGAGTAAAACACTGCTCTCTAGTGGGAGGTGTTTGAACACAACACAGAGTGAACCTCTGTCTGCAACCAATCTCTAcatataaactaataattaaaaatctatgctgtgtttttttttaaaacagatacagtattgcaaaacaagaTATTGCTAATTAAGAGCTTGAAGTTGTAAGGCATGATAGAAAAAGAAACCTCTGAAATGTGCGGGGCAGGGTGTCCTCCAGGACTAGGATTGGGTTTTTTACCCCTGGTTTAAACcaaattgtttgtttatttgatatCACACAAGCTGTAACACTAGATCTTGTTCACGTTTTGACACAGGTTTGGTACTTTAATATTGCcttctgctgtttttaataAGGGCTAATGATTATCTCACAGACTACCAATAGATAAAGTTCTCACACATGGCCATTAATAtagtgttgtttgttttttttgttttgatttgatttgcaAATGCTGGGATCGTGAATGatgtacatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU159008 True 806 lncRNA 0.34 1 42845567 42846372
TU159010 False 566 lncRNA 0.34 1 42845807 42846372

Neighbor

gene id symbol gene type direction distance location
atg4c atg4c,LOC107704517 coding upstream 1472 42826986 ~ 42844095 (+)
angptl3 angptl3 coding upstream 44763 42795789 ~ 42800804 (+)
usp1 usp1 coding upstream 99989 42737570 ~ 42745578 (+)
mafa mafa coding upstream 340349 42500903 ~ 42505218 (+)
zc3h3 NA coding upstream 363840 42382928 ~ 42481727 (+)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 405210 43251582 ~ 43312069 (+)
cachd1 cachd1,LOC107692379,LOC107556548 coding downstream 492070 43338442 ~ 43437797 (+)
raver2 LOC108412528,LOC106024416 coding downstream 603400 43449772 ~ 43558728 (+)
ak4 ak4,LOC107692375,LOC107590615,LOC107659053,LOC107591174 coding downstream 780856 43627228 ~ 43642767 (+)
dnajc6 dnajc6 coding downstream 808674 43655046 ~ 43693983 (+)
G117739 NA non-coding upstream 34004 42809479 ~ 42811563 (+)
G117704 dock7 non-coding upstream 94257 42749118 ~ 42751310 (+)
LOC111193697 NA non-coding upstream 207063 42637184 ~ 42638504 (+)
G117647 NA non-coding upstream 409030 42368505 ~ 42436537 (+)
G117641 NA non-coding upstream 494835 42350179 ~ 42350732 (+)
G117759 NA non-coding downstream 272169 43118541 ~ 43119083 (+)
G117787 NA non-coding downstream 323864 43170236 ~ 43170687 (+)
G117806 NA non-coding downstream 375776 43222148 ~ 43222777 (+)
G117807 NA non-coding downstream 377139 43223511 ~ 43223787 (+)
G117808 NA non-coding downstream 380131 43226503 ~ 43232574 (+)
G117642 NA other upstream 489783 42351807 ~ 42355784 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 1477838 41353501 ~ 41367729 (+)
fam183a NA other upstream 1679408 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 2037022 40799471 ~ 40808545 (+)
G116997 NA other upstream 3486179 39358871 ~ 39359388 (+)

Expression


Co-expression Network