nasp (nasp,LOC107551040,LOC107594614)


Basic Information

Item Value
gene id nasp
gene name nasp,LOC107551040,LOC107594614
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42131577 ~ 42137885 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248166.3
GTGAGGACGCTGTATCCGTATTTAAAGGCGCCAACAAAGCGGGAGAGAAGTTCGGGGCGCGCTGATCTGCCATCTTCTGTTTTAAGGCCAGTTCCGCGGAGTAAACGGCGCTGTTCTTTCCAGAGACGCTTCCTTGGCTTTTCCCAGACTGTTAAAATGCCAGAAGAGACGGCCGCCGCGTCCACTGCTGAGAGCACGGAGGAGAAGCCTGCTCATCCAGTGCTGCAGACAGTTCTGTAGATGTGGCTGAAGAGGCAAAGAAGCTCATTGGCACAGGAAACAGACACCTAGTTATGGGTGATGTCGTGTCTGCAGTCAGTGTGTTCCAGGAGGCGTGTGCAATGCTCGCTGAGAAATATGGGGATACTGCTGATGAATGTGGAGAGGCCTTTTTCTTGTGTGGGAAGTCATTATTGGAGCTTGCCAGGATGGAGAACACAGTCTTGGGGAATGCTTTAGAGGGAGTCCctgaggaagagggagagaaacaggATGATTCCAAGATTGAGAGTGCAGACAACTTGGATGAGAAAACCAGAGATGAGCTTCGCGAACAGGTTTATGATGCCATGTCTGAGGAGAAGAGGGACTCTGAAGATAAAAAGGAGGCAAAGGAAGATGGGAAAGAGGTAAAGGAGTCTGGAGACATGCAAGCAAAAAAGGAAGATGCTGAAGATTCCGCAGTCAAAAAGGAAGAGAAGAGTAAATCTCCTGTTAAAAATGGTGAGAACACCACAGTGCATCCTGCCAAAGAAGAGAAGGCTGCTGAAAGCCAAGGGAAGACTGCTAAAGACTCAGTCAAAACTGATGAGAAAGCTTCTGAAAATGGAAACAAGACAACAGAGCATCTAGTCAAAAGTGAAAAAGCTGAGGATGGTAAGGTAAAGAAGTCTCCTGCCAAATGTGAAGAGAAAGCTGTGGAGGATTCAGGCAAGATGGAGGAGGGAGGGGATTCCTCAAAACAAGAAGACAAGGCAGTGACTAAGAAGAATGTGCAGCAAGATGTCAAGAGCACAGAAGAGCCAAAAGATGGTGAAGATGCTCCAGAGCCTATGGAGGAAGAAGGTGGAGaTGACgacgaagaagaagaggaagatgagGATGAAGAGGAAGGGGAGGGAAAAGACGATAAGGAGAGTGAAGAGGAGGAGGTTGGAAATCTTCAGTTGGCATGGGAGATGCTGGAAGTGGCGAAAGTTATTTACAAAAGGAAGGAGAGCAAGGATGACCAGTTAATGGCAGCACAAATCTTCTTGAAACTTGGAGAAGTTGGTGCAGAGTCGGgtAATTACCCTCAAGCTCTGGAGGACTTCAAGGAGTGCTTGGCTCTACAACTGAAGCATTTGCCGCCTCACAGTCGTCTGCTGGCAGAGACCCATTACCAGCTGGGCACAACTTTTAGCTACACAGCTCAGTACAACCTGGCAATTGAGCACTTTACAAAGTCAATCAGCGTAATTGAGAGCCGATTGGCCATGCTTCAGGAAGTAATTAATAAGGCAGAGGGTGCTGAGGAAGCAAAGGAAGAAAAGAATGAGTTTGAGGAGCTGAAGCAGCTACTTCCAGAGATTACTGAAAAGGTAGAAGATGCAAAGGAAAGTCAGAAGACAGCAGCTGCAGCATCAGAAGCTATACACCAGACACTGGGAGGAGCATCTACATCCTCTGCATTTCCAACTGAAAATGGGGGCCCATCTTCATCCTCAACAGTCAGCCAGATTGCCGTAAAACCAGCGGACAGTGCATCTTCGGCAGCTGCATCAGATATCTCTCACCTTGTTCGTAAGAAGAGGAAACCAGAAGACGAGAGCCCAAAAAAGGACAGTGATGCTAAAAAGGTCAAACAGGAGACCACAGTTAATGGCAGCGGTGACTCTGCCAGCAACAGCAATGGAGTCCAGGAGAAAATGGAGCAGGAGCCTGTGAATTCCACTTCCTCTGTAGAAACATCAGCATGATGGGAGGTTCTTCTCCTGGCTGACCACGGATCTTCCAACCAGCACAGCATGCCTGCCTCAAGTCTCCACAAACAGCTCTTTGTTTTGTAAATAAGACATTAacctttttctgtgtgtgtccaACTTTTGTATTGTAGTAGTTTCAATAAAGATATTTGCATAGGCTAA

Function

symbol description
nasp Predicted to enable histone binding activity. Predicted to be involved in CENP-A containing nucleosome assembly and DNA replication-dependent nucleosome assembly. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Is expressed in several structures, including eye; immature eye; pectoral fin; pharyngeal arch; and ventricular zone. Orthologous to human NASP (nuclear autoantigenic sperm protein).

NR:

description
PREDICTED: nuclear autoantigenic sperm protein isoform X1

GO: NA

KEGG:

id description
K11291 NASP; nuclear autoantigenic sperm protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248166.3 True 2126 mRNA 0.47 16 42131577 42137885

Neighbor

gene id symbol gene type direction distance location
tmem69 tmem69,LOC107579605 coding downstream 45750 42083217 ~ 42085827 (-)
mast2 mast2 coding downstream 49705 41880968 ~ 42081872 (-)
LOC111193790 NA coding downstream 549560 41581833 ~ 41582017 (-)
tspan1 NA coding downstream 745936 41371036 ~ 41385641 (-)
orc1 orc1,LOC107725193,LOC105913168,LOC104957406 coding downstream 796048 41324722 ~ 41335529 (-)
akr1a1 akr1a1,akr1a1b,LOC107731642 coding upstream 1479 42139364 ~ 42151948 (-)
LOC103030126 LOC103030126,LOC108440237,LOC108271568,LOC107692395 coding upstream 138380 42276265 ~ 42335124 (-)
LOC103033504 NA coding upstream 223851 42361736 ~ 42381697 (-)
LOC107197605 NA coding upstream 514648 42652533 ~ 42656081 (-)
kank4 kank4,LOC107731645,LOC107704518,LOC107692389,LOC107556542,LOC107591186 coding upstream 520073 42657958 ~ 42728407 (-)
G117578 NA non-coding downstream 18518 42097731 ~ 42113059 (-)
G117569 NA non-coding downstream 67569 42063212 ~ 42064008 (-)
G117567 NA non-coding downstream 112047 42016758 ~ 42019530 (-)
G117496 NA non-coding downstream 329665 41800777 ~ 41801912 (-)
LOC111193695 NA non-coding downstream 645353 41461930 ~ 41486224 (-)
G117623 NA non-coding upstream 78573 42216458 ~ 42217016 (-)
G117660 NA non-coding upstream 212235 42350120 ~ 42351195 (-)
G117662 NA non-coding upstream 230620 42368505 ~ 42436537 (-)
G117811 NA non-coding upstream 1088669 43226554 ~ 43232574 (-)
G117954 NA non-coding upstream 1300237 43438122 ~ 43438335 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other downstream 1113763 40816133 ~ 41017814 (-)
LOC103034527 NA other downstream 1361895 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 1767617 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 2840549 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 3167883 38953162 ~ 38963694 (-)

Expression


Co-expression Network