angptl3 (angptl3)


Basic Information

Item Value
gene id angptl3
gene name angptl3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42795789 ~ 42800804 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248181.3
TAGCTCTCCTGCTGTTGTTCTCACAACAGGcggagagagaggcagaaggaCAGGGGAGAAGGAAGGAAAGCAAAAGCCTGTAGAGAAGTGAGACTGTACAGGAATTTAACACAAGCAGCTGCAGCCCTCTGACGTCAAAATGAAGGTTGCCAGCTTGATTTTCCTGCTGATTGTTCTGTGTACCATCAACGCAGCCCCACGAACAGTCACAGAGGCACCTCCTAGCACTCCACGACCGACGGAAGCCAGGTCCCGCTTTGCGATGCTGGATGACGTGCGTCTGCTGGCTAACGGCCTCCTTCAGCTGGGGCAAAGCCTGCGAGAGTTTGTGCACAAGACCAAGGCGCAAATCAACGACATCTTCCAAAAGCTGAACATCTTTGACCGCTCCTTTTACCAACTCTCGGTCGTGACCAGCGAGAtcaaggaagaagaagagaagctGAAGGAAACCACCACCTTCCTAAAAGCCAACAATGAGGAGATCCGCAATCTGTCAATGGAGATCAACTCCAAGATCAACAACATCCTGCAGGAGCGCAGTCACCTGCAGAGTAAAGTGGGCAGTctggaggagaagctgaaagGCCTGTCTGAGACCATGATACCTCTAGAGCAGCTCCAGGAGATCACTACCCTAAAGGATGTGATCGACTCTCAGGAGAAGACCATCAAAACCCTGCTAATGTCAGTGCAAGAGCAGCATGAGCAGCTCAACTCTCAGAAAATCAAAATCAAGAGTTTGGAAGAGAAGCTTAATTACGACTTTCTCCAAGAAACTGCAGAAAAACCTGCAGATTCAAGTCCAGAACAGCCAGACATTCTTGAGTACCTGACAAGCAACTCAACCAGCTCAACTATGGACATAAATGACTTTCCCACAGACTGCAGTGAAGTGTTCAACAGAGGCCAGAGGAACAGTGGAGTTTACCCCATCAAACCCAATCAATCAGAGCCCTTCAACGTGTACTGCGATATCAGCTCAGATGGAGCTTCCACAGTTATTCAACGCAGAGTGGAAGGGTCTGTGGATTTTGACCAGAACTGGGACAAATATGAACAAGGATTTGGAAATCTGGaaaAGGAGTTTTGGCTGGGTCTGGCTAAAATTTACTCAATAGCCAGACAGAGCATGTACATACTAAACATTCAGCTGGAGGACTGCAGAGATGAAAAAAGATTTATTGAGTACATGTTCACTCTGGATGGTCCTGCATCTCACTACATGATCCATCTGACCCCTCTGTCTGGAAACCTGCCGGATGCCATGAGCAACCACACTGGCATGATGTTCACCACCAAAGACAAGGACAATGATAATCTTGAGGATTCCAACTGTGCCCGTAACTACTCAGGTGGCTGGTGGTTTAACGCATGTGGTGACACCAATCTAAACGGGCGGTACACCTGGGCCCGCTCAAGGAGTCGCACTCCACGCAGGAAAGGGATCTACTGGAGACCCAGCAGGGGAAACTCTTACACCCTTAAATTTACAAAGATCTCCATGAGGCCAATGTCCTAGTTCTAGTGATCACTGAACCTCACTGATTGAGCAACTCTCAATCAATGAGAAAGGCAGGCTGCAGTGACTCTGGCCAAGAGAAGTTTCCCCATTCTCCTCACCCTTAGTTGCAGGGAAAAAATATAACGCTGACTCCTTTTCAAACAATGATGCAACAGCGCCAGGTCACTGACGTATGACAGAGTTGCAGATAGAGACAGAGTTGCAGATGTTGCATGTGCAGTTTTGGTAGAACTCTTCCTTATTGAATGTTTTGGAAAATCATGTCCATAGATAATACATGTATTATGCATAATGCATTGCTGGAGTAATAACAGACAAATTGCATGCTGTTATGAATTGTGATACATTTTGTAACCACATAAATAACTATACACCAAGTATCCCCTGAAAAAAGTAGTATATAGCATAGATGTGTAATAgttctcaatgtttttttttgtctgtttttatattgCAGTTTAACTTAATACCGTATTTAAGCAGTGTTCATATTTGCGCTACATTAATCAAGAAACGTGCTATGATGGTAGTAACTGTTTGCTCAATAACATTACTGAGTCATATTGACTCCTGGCTACACACTGTGTATATGCAACTGTA

Function

symbol description
angptl3 Predicted to enable signaling receptor binding activity. Acts upstream of or within hepatocyte proliferation and lipid metabolic process. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in liver; liver primordium; and yolk syncytial layer. Human ortholog(s) of this gene implicated in familial hypobetalipoproteinemia 2. Orthologous to human ANGPTL3 (angiopoietin like 3).

NR:

description
angiopoietin-related protein 3 isoform X1

GO: NA

KEGG:

id description
K22288 ANGPTL3; angiopoietin-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248181.3 True 2125 mRNA 0.45 7 42795789 42800804

Neighbor

gene id symbol gene type direction distance location
usp1 usp1 coding upstream 50211 42737570 ~ 42745578 (+)
mafa mafa coding upstream 290571 42500903 ~ 42505218 (+)
zc3h3 NA coding upstream 314062 42382928 ~ 42481727 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding upstream 525758 42217514 ~ 42270031 (+)
ccdc17 NA coding upstream 682253 42101941 ~ 42113536 (+)
atg4c atg4c,LOC107704517 coding downstream 26182 42826986 ~ 42844095 (+)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 450778 43251582 ~ 43312069 (+)
cachd1 cachd1,LOC107692379,LOC107556548 coding downstream 537638 43338442 ~ 43437797 (+)
raver2 LOC108412528,LOC106024416 coding downstream 648968 43449772 ~ 43558728 (+)
ak4 ak4,LOC107692375,LOC107590615,LOC107659053,LOC107591174 coding downstream 826424 43627228 ~ 43642767 (+)
G117704 dock7 non-coding upstream 44479 42749118 ~ 42751310 (+)
LOC111193697 NA non-coding upstream 157285 42637184 ~ 42638504 (+)
G117647 NA non-coding upstream 359252 42368505 ~ 42436537 (+)
G117641 NA non-coding upstream 445057 42350179 ~ 42350732 (+)
LOC111193792 NA non-coding upstream 520634 42272215 ~ 42275155 (+)
G117739 NA non-coding downstream 8675 42809479 ~ 42811563 (+)
G117743 NA non-coding downstream 44763 42845567 ~ 42846372 (+)
G117759 NA non-coding downstream 317737 43118541 ~ 43119083 (+)
G117787 NA non-coding downstream 369432 43170236 ~ 43170687 (+)
G117806 NA non-coding downstream 421344 43222148 ~ 43222777 (+)
G117642 NA other upstream 440005 42351807 ~ 42355784 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 1428060 41353501 ~ 41367729 (+)
fam183a NA other upstream 1629630 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 1987244 40799471 ~ 40808545 (+)
G116997 NA other upstream 3436401 39358871 ~ 39359388 (+)

Expression


Co-expression Network