atg4c (atg4c,LOC107704517)


Basic Information

Item Value
gene id atg4c
gene name atg4c,LOC107704517
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 42826986 ~ 42844095 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248204.3
AACAGCGACACTGGCAGATACTTCCTCACAATGTAAACACAGGGGTGACAGGCTGGCAAATATTCAAAGCCATTTCCCAGTATATGAGCTGTGATGGGTTCTACTCCTCCATGGCTGATGAAATGGAGACTAAAGGGACCGACGAGGTGGAGAAACTAAAGACAAGGTTCATGTCAGCATGGCATAGTATGAAGTACAGTTGGGTTCTGAAAACGAAGACTTCTTTCAGTCGCAATTCTCCAGTTTTCCTGCTGGGAAAATGTTATCACTTTAAAGCAGAGGATGATGAAAGCCCTACCGAAAACAGTGCCACTGACGAGTTTAGTCATGATGCCGTCATGGGTAACGTGGATGACTTTCGGAAGGACTTTGCTTCCCGGGTGTGGCTTACCTATCGGGAGGAGTTTGCTGCCCTTCCAGGCTCGACTGTCACTTCAGACTGTGGATGGGGCTGCACACTTCGAGCAGGCCAGATGATGCTGGCCCAGGCACTACTGCTCCATTTCTTGGGTAGAGACTGGACGTGGCCTGAGGCACTGAACTTGGAGCCTCTGGACACAGAAACACGGACCAGCAGTGCAGCACGAAGACTGGTAGCCTCATTAGAAGCTTCATTCCAAGGAGACAGACCAAGGGTTCCAGAGCCCCTCTGCCAGGGTGGTGCAGAAGAGGCTGATTCCCATCTCAAAGAGGTGTATCATCGCACTATTGTTACCTGGTTTGGAGACAGTCCCTCTGCTCATCTTGGAGTCCATAGGCTGGTCACTCTGGGCATGACCTCAGGCAAAAGAGCTGGGGATTGGTACGGTCCTGCAGTGGTGGCACACATACTCAGAAAAGCTGTGGAGGAGACAACAGAACCAGGACTGAAAGGCATAAGCGTTTATGTGGCACAGGACTGTACAGTGTACAGTGCTGATGTTATCGAGAGCCACTCAGCTCGTACAGACACGTGTGGGGTTCCTGAGGGGCCTGTTGCTGACAGCAGAGCCGTCATCATCCTCATCCCCATCAGACTGGGTGGAGAAAAGATCAACCCAGACTATTTCAACTTTGTCAAGGGTATCTTAAGTCTGGAGTACTGTATTGGGATCATCGGGGGGAAACCCAAACAGGCGTACTACTTTGTAGGATTTCAAgATGACAGCTTGATTTACATGGACCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCGATTTTCCTCTGCAGTCCTATCATTGCCCTTCACCTAAGAAGATGCCTTTCATTAAAATGGATCCCAGCTGTACCATTGGATTCTACTCGAAAAGTGTTCAAGATTATGAAAGAATCAGCAATGAACTCTCAAAGGTTCTGCAGCCGTCGGCAAAGGAGAAGTACCCAGCGTTTACCTTCATGAAAGGACACGGGCGAGATTATGAACTATCGGCCCCTGTGGAGAAGAAAGAGTGGCCCTTCATCACAGACAAACGGAAGGCTGGGGCGAGTGCAGGGGACTTTGTGCTGCTGTAAGTTAGGACCAGTGGATACCTGAAGCTCTAACCCGGggcctgtattttttaaaacagagtATGACTGCTGTTTTGGATGTGGCATTTCTTGCAGACACCAtgattttgcattatttttgtgAATGAACTGTGTATACTGGGCCTGTACTGAACCGGTGTCAGAGTAGTATTGCTGATTCATAGACAGTTTATGTTTCTTTTCGCATCCATTCTGATCAGTATCACTAACAGCTAGGAGGGAACGGCATCCATAAACAACAGCAGTCCGAGGCTGAGATGTTGTGATCTGTTAATATGGGCCCTGATCTTAACATAACACTGTCTTAAAACACGCTCATTGTGTCTCGCACAGATGTTCACACTGAACTTCCTGCTACATTTCCTGCTTAGTCCAAGAGGGAGCCTTTTCAGGGTATTAAATTATAAGGATTATCAGTACTTGGtataaaacattgatttaatttttttgaataatgtaattattagtgCTAAAATGTGAAACCTGGTACTTTATTCATTACCTTTCTCAGgcttctttaaaatatatatatatgtatatatacatatattatttttctgaaaGCAGCATATATCACACTCCAGTTAAAAGTTTAGATGGAAATGATCTGCTCGTCATTGTGCACTGTGCTTGTAGCTGGCTGCACTGTGTGCTCCAATGaagagacataaaaaaaaaaaacagaatttatatttatatcagttttCCAGACAAGGTTTAAGCCTAGCTTCATACTACACCAAATTTAAATGGAGATTTGCCATCGCTATGTCTAGGCTTAAACCCTGTCTCAGAAACTGCTTCATAGAATTTTAACAAACATCTACACAGCCTTTGAGAATATGGTATAGTGCCTCCTGGAAGCAGGATGCAGGATGATGTAGCACAAAGACAAGATGCTTACAGACTCTGAGTGCTTCCAAATAGTACTGTAAAatcacactgtaaaataaaaaagtagcatttttatatttacacaaacactcatttacactcacacacacatgctcattAAAATAGGGAGTGAATATTGTTGGCACTGAGACTGTTGTGTAGAAAAGTCCATTTTATAGTGACATAAGTATGTTTGATTATTAATTGTTCTCTGCTTTAAATCAATTCCAGTTGGAGTAAGTAGAagaa
>XM_022675864.1
GCGGAGGAGAACACAGCAGCAGCGCCCACAGATTACCGTACAACACCGGGAGGCTACGCACCACGAATCCTGCACTCAGCCCCGAGACCCACTCAGCCGCATTATTACAGCTTTAATCATACAGATAACCGGCTAAACATCGCTCTCCGGAATAAATTATTCAAAGCCATTTCCCAGTATATGAGCTGTGATGGGTTCTACTCCTCCATGGCTGATGAAATGGAGACTAAAGGGACCGACGAGGTGGAGAAACTAAAGACAAGGTTCATGTCAGCATGGCATAGTATGAAGTACAGTTGGGTTCTGAAAACGAAGACTTCTTTCAGTCGCAATTCTCCAGTTTTCCTGCTGGGAAAATGTTATCACTTTAAAGCAGAGGATGATGAAAGCCCTACCGAAAACAGTGCCACTGACGAGTTTAGTCATGATGCCGTCATGGGTAACGTGGATGACTTTCGGAAGGACTTTGCTTCCCGGGTGTGGCTTACCTATCGGGAGGAGTTTGCTGCCCTTCCAGGCTCGACTGTCACTTCAGACTGTGGATGGGGCTGCACACTTCGAGCAGGCCAGATGATGCTGGCCCAGGCACTACTGCTCCATTTCTTGGGTAGAGACTGGACGTGGCCTGAGGCACTGAACTTGGAGCCTCTGGACACAGAAACACGGACCAGCAGTGCAGCACGAAGACTGGTAGCCTCATTAGAAGCTTCATTCCAAGGAGACAGACCAAGGGTTCCAGAGCCCCTCTGCCAGGGTGGTGCAGAAGAGGCTGATTCCCATCTCAAAGAGGTGTATCATCGCACTATTGTTACCTGGTTTGGAGACAGTCCCTCTGCTCATCTTGGAGTCCATAGGCTGGTCACTCTGGGCATGACCTCAGGCAAAAGAGCTGGGGATTGGTACGGTCCTGCAGTGGTGGCACACATACTCAGAAAAGCTGTGGAGGAGACAACAGAACCAGGACTGAAAGGCATAAGCGTTTATGTGGCACAGGACTGTACAGTGTACAGTGCTGATGTTATCGAGAGCCACTCAGCTCGTACAGACACGTGTGGGGTTCCTGAGGGGCCTGTTGCTGACAGCAGAGCCGTCATCATCCTCATCCCCATCAGACTGGGTGGAGAAAAGATCAACCCAGACTATTTCAACTTTGTCAAGGGTATCTTAAGTCTGGAGTACTGTATTGGGATCATCGGGGGGAAACCCAAACAGGCGTACTACTTTGTAGGATTTCAAgATGACAGCTTGATTTACATGGACCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCGATTTTCCTCTGCAGTCCTATCATTGCCCTTCACCTAAGAAGATGCCTTTCATTAAAATGGATCCCAGCTGTACCATTGGATTCTACTCGAAAAGTGTTCAAGATTATGAAAGAATCAGCAATGAACTCTCAAAGGTTCTGCAGCCGTCGGCAAAGGAGAAGTACCCAGCGTTTACCTTCATGAAAGGACACGGGCGAGATTATGAACTATCGGCCCCTGTGGAGAAGAAAGAGTGGCCCTTCATCACAGACAAACGGAAGGCTGGGGCGAGTGCAGGGGACTTTGTGCTGCTGTAAGTTAGGACCAGTGGATACCTGAAGCTCTAACCCGGggcctgtattttttaaaacagagtATGACTGCTGTTTTGGATGTGGCATTTCTTGCAGACACCAtgattttgcattatttttgtgAATGAACTGTGTATACTGGGCCTGTACTGAACCGGTGTCAGAGTAGTATTGCTGATTCATAGACAGTTTATGTTTCTTTTCGCATCCATTCTGATCAGTATCACTAACAGCTAGGAGGGAACGGCATCCATAAACAACAGCAGTCCGAGGCTGAGATGTTGTGATCTGTTAATATGGGCCCTGATCTTAACATAACACTGTCTTAAAACACGCTCATTGTGTCTCGCACAGATGTTCACACTGAACTTCCTGCTACATTTCCTGCTTAGTCCAAGAGGGAGCCTTTTCAGGGTATTAAATTATAAGGATTATCAGTACTTGGtataaaacattgatttaatttttttgaataatgtaattattagtgCTAAAATGTGAAACCTGGTACTTTATTCATTACCTTTCTCAGgcttctttaaaatatatatatatgtatatatacatatattatttttctgaaaGCAGCATATATCACACTCCAGTTAAAAGTTTAGATGGAAATGATCTGCTCGTCATTGTGCACTGTGCTTGTAGCTGGCTGCACTGTGTGCTCCAATGaagagacataaaaaaaaaaaacagaatttatatttatatcagttttCCAGACAAGGTTTAAGCCTAGCTTCATACTACACCAAATTTAAATGGAGATTTGCCATCGCTATGTCTAGGCTTAAACCCTGTCTCAGAAACTGCTTCATAGAATTTTAACAAACATCTACACAGCCTTTGAGAATATGGTATAGTGCCTCCTGGAAGCAGGATGCAGGATGATGTAGCACAAAGACAAGATGCTTACAGACTCTGAGTGCTTCCAAATAGTACTGTAAAatcacactgtaaaataaaaaagtagcatttttatatttacacaaacactcatttacactcacacacacatgctcattAAAATAGGGAGTGAATATTGTTGGCACTGAGACTGTTGTGTAGAAAAGTCCATTTTATAGTGACATAAGTATGTTTGATTATTAATTGTTCTCTGCTTTAAATCAATTCCAGTTGGAGTAAGTAGAagaa
>XM_022675865.1
AACAGCGACACTGGCAGATACTTCCTCACAATGTAAACACAGGGGTGACAGGCTGGCAAATATTCAAAGCCATTTCCCAGTATATGAGCTGTGATGGGTTCTACTCCTCCATGGCTGATGAAATGGAGACTAAAGGGACCGACGAGGTGGAGAAACTAAAGACAAGGTTCATGTCAGCATGGCATAGTATGAAGTACAGTTGGGTTCTGAAAACGAAGACTTCTTTCAGTCGCAATTCTCCAGTTTTCCTGCTGGGAAAATGTTATCACTTTAAAGCAGAGGATGATGAAAGCCCTACCGAAAACAGTGCCACTGACGAGTTTAGTCATGATGCCGTCATGGGTAACGTGGATGACTTTCGGAAGGACTTTGCTTCCCGGGTGTGGCTTACCTATCGGGAGGAGTTTGCTGCCCTTCCAGGCTCGACTGTCACTTCAGACTGTGGATGGGGCTGCACACTTCGAGCAGGCCAGATGATGCTGGCCCAGGCACTACTGCTCCATTTCTTGGGTAGAGACTGGACGTGGCCTGAGGCACTGAACTTGGAGCCTCTGGACACAGAAACACGGACCAGCAGTGCAGCACGAAGACTGGTAGCCTCATTAGAAGCTTCATTCCAAGGAGACAGACCAAGGGTTCCAGAGCCCCTCTGCCAGGGTGGTGCAGAAGAGGCTGATTCCCATCTCAAAGAGGTGTATCATCGCACTATTGTTACCTGGTTTGGAGACAGTCCCTCTGCTCATCTTGGAGTCCATAGGCTGGTCACTCTGGGCATGACCTCAGGCAAAAGAGCTGGGGATTGGTACGGTCCTGCAGTGGTGGCACACATACTCAGAAAAGCTGTGGAGGAGACAACAGAACCAGGACTGAAAGGCATAAGCGTTTATGTGGCACAGGACTGTACAGTGTACAGTGCTGATGTTATCGAGAGCCACTCAGCTCGTACAGACACGTGTGGGGTTCCTGAGGGGCCTGTTGCTGACAGCAGAGCCGTCATCATCCTCATCCCCATCAGACTGGGTGGAGAAAAGATCAACCCAGACTATTTCAACTTTGTCAAGGGTATCTTAAGTCTGGAGTACTGTATTGGGATCATCGGGGGGAAACCCAAACAGGCGTACTACTTTGTAGGATTTCAAgATGACAGCTTGATTTACATGGACCCTCATTACTGTCAGTCTTTTGTGGATGTCAGCACAAGCGATTTTCCTCTGCAGTCCTATCATTGCCCTTCACCTAAGAAGATGCCTTTCATTAAAATGGATCCCAGCTGTACCATTGGATTCTACTCGAAAAGTGTTCAAGATTATGAAAGAATCAGCAATGAACTCTCAAAGATATGGAACAGGTTCTGCAGCCGTCGGCAAAGGAGAAGTACCCAGCGTTTACCTTCATGAAAGGACACGGGCGAGATTATGAACTATCGGCCCCTGTGGAGAAGAAAGAGTGGCCCTTCATCACAGACAAACGGAAGGCTGGGGCGAGTGCAGGGGACTTTGTGCTGCTGTAAGTTAGGACCAGTGGATACCTGAAGCTCTAACCCGGggcctgtattttttaaaacagagtATGACTGCTGTTTTGGATGTGGCATTTCTTGCAGACACCAtgattttgcattatttttgtgAATGAACTGTGTATACTGGGCCTGTACTGAACCGGTGTCAGAGTAGTATTGCTGATTCATAGACAGTTTATGTTTCTTTTCGCATCCATTCTGATCAGTATCACTAACAGCTAGGAGGGAACGGCATCCATAAACAACAGCAGTCCGAGGCTGAGATGTTGTGATCTGTTAATATGGGCCCTGATCTTAACATAACACTGTCTTAAAACACGCTCATTGTGTCTCGCACAGATGTTCACACTGAACTTCCTGCTACATTTCCTGCTTAGTCCAAGAGGGAGCCTTTTCAGGGTATTAAATTATAAGGATTATCAGTACTTGGtataaaacattgatttaatttttttgaataatgtaattattagtgCTAAAATGTGAAACCTGGTACTTTATTCATTACCTTTCTCAGgcttctttaaaatatatatatatgtatatatacatatattatttttctgaaaGCAGCATATATCACACTCCAGTTAAAAGTTTAGATGGAAATGATCTGCTCGTCATTGTGCACTGTGCTTGTAGCTGGCTGCACTGTGTGCTCCAATGaagagacataaaaaaaaaaaacagaatttatatttatatcagttttCCAGACAAGGTTTAAGCCTAGCTTCATACTACACCAAATTTAAATGGAGATTTGCCATCGCTATGTCTAGGCTTAAACCCTGTCTCAGAAACTGCTTCATAGAATTTTAACAAACATCTACACAGCCTTTGAGAATATGGTATAGTGCCTCCTGGAAGCAGGATGCAGGATGATGTAGCACAAAGACAAGATGCTTACAGACTCTGAGTGCTTCCAAATAGTACTGTAAAatcacactgtaaaataaaaaagtagcatttttatatttacacaaacactcatttacactcacacacacatgctcattAAAATAGGGAGTGAATATTGTTGGCACTGAGACTGTTGTGTAGAAAAGTCCATTTTATAGTGACATAAGTATGTTTGATTATTAATTGTTCTCTGCTTTAAATCAATTCCAGTTGGAGTAAGTAGAagaa

Function

symbol description
atg4c Predicted to enable cysteine-type endopeptidase activity. Predicted to act upstream of or within autophagy; protein transport; and proteolysis. Predicted to be located in cytoplasm. Orthologous to human ATG4C (autophagy related 4C cysteine peptidase).

NR:

description
cysteine protease ATG4C

GO:

id name namespace
GO:0006914 autophagy biological_process
GO:0015031 protein transport biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248204.3 False 2660 mRNA 0.44 11 42828638 42844095
XM_022675864.1 True 2757 mRNA 0.44 11 42826986 42844095
XM_022675865.1 False 2671 mRNA 0.44 11 42828638 42844095

Neighbor

gene id symbol gene type direction distance location
angptl3 angptl3 coding upstream 26182 42795789 ~ 42800804 (+)
usp1 usp1 coding upstream 81408 42737570 ~ 42745578 (+)
mafa mafa coding upstream 321768 42500903 ~ 42505218 (+)
zc3h3 NA coding upstream 345259 42382928 ~ 42481727 (+)
LOC103033178 adcyap1r1b,LOC108441855,LOC108271541,LOC107692394,LOC107731652,LOC107717143 coding upstream 556955 42217514 ~ 42270031 (+)
ror1 ror1,LOC107731648,LOC107556549,LOC107591177 coding downstream 407487 43251582 ~ 43312069 (+)
cachd1 cachd1,LOC107692379,LOC107556548 coding downstream 494347 43338442 ~ 43437797 (+)
raver2 LOC108412528,LOC106024416 coding downstream 605677 43449772 ~ 43558728 (+)
ak4 ak4,LOC107692375,LOC107590615,LOC107659053,LOC107591174 coding downstream 783133 43627228 ~ 43642767 (+)
dnajc6 dnajc6 coding downstream 810951 43655046 ~ 43693983 (+)
G117739 NA non-coding upstream 15423 42809479 ~ 42811563 (+)
G117704 dock7 non-coding upstream 75676 42749118 ~ 42751310 (+)
LOC111193697 NA non-coding upstream 188482 42637184 ~ 42638504 (+)
G117647 NA non-coding upstream 390449 42368505 ~ 42436537 (+)
G117641 NA non-coding upstream 476254 42350179 ~ 42350732 (+)
G117743 NA non-coding downstream 1472 42845567 ~ 42846372 (+)
G117759 NA non-coding downstream 274446 43118541 ~ 43119083 (+)
G117787 NA non-coding downstream 326141 43170236 ~ 43170687 (+)
G117806 NA non-coding downstream 378053 43222148 ~ 43222777 (+)
G117807 NA non-coding downstream 379416 43223511 ~ 43223787 (+)
G117642 NA other upstream 471202 42351807 ~ 42355784 (+)
pomgnt1 pomgnt1,LOC102776429 other upstream 1459257 41353501 ~ 41367729 (+)
fam183a NA other upstream 1660827 41159187 ~ 41166159 (+)
LOC103033994 LOC103033994,LOC108441647 other upstream 2018441 40799471 ~ 40808545 (+)
G116997 NA other upstream 3467598 39358871 ~ 39359388 (+)

Expression


Co-expression Network