LOC103028032 (brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317)


Basic Information

Item Value
gene id LOC103028032
gene name brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 39954473 ~ 40009536 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249062.3
AGTCGGCTCGCCTCAGAAATAAATTGGTCGTTTTGACGTCGCGGAGGAGCATCGTTTTGAGCACctgacacacgcacacacgcgcgcgcacgcacacactggagcctctctctctcacacacacacagttcgtCCCTCACGCAGGAGTGTATCACAGGAGACTAACAGAGGTCCCAGcggtgtgtgtatgttatgttGGACAGCGTGtgaaatgactacacactacCGCACATCCAGCGCTCCCAACTCTGCGCCTCAGGAACGGACTAACGGATTCTTCAGAACTTCCACTTCATAAATCCTCATTAAACACGTTTCTGACTGGAccagaggagtgagagaggaacaGAACAGCGGAGGAAGAAAAGAACTGAagatttttcaccaaaaactgtcagttttttctcttttgtgccCTTTTAACCGTTTTTTAAACGCTGGACTGTACTACAGATGCCAGTAGGACTTGTGCGCGAGCTTCCCGCCGCCCTGCCTGCTGCTCTCTGTTCTCCCAGCTCGTGAATTCCCTCGCGCTCCTTTAAACGTTCAGtTCCAGGAGGTGAGGAAAGTCCTGAGAGAATGTCGAGTCGTGGGGTGAAGCATGAGCTGCCGCTGTATTGCTTTTAGACTGGCCTATCTGATGTGTCCATGGGAGTGTATTGTGCTAAGCCTTCACTGCTGGGTTCTAGCCTCTGCTGCAGGCTCCCGTGATGCCGCTGGTACATTTGGATGGCTCCTTTCAGACAAAGGGCCTTTTCATCACTCTCAGGAATTTGCAGAGTTTGTGGAGCGCTACCAACAGGGCTTCACCACCAAGTACAAAATTTACAGAGAGTTCGGACGCTGGAAGGTGAACAGCTTGGCTCTGGAAAGAGAGGACAATGGCATTCCTTTCCCCCTCGACCCAGAGTTCATGCAGACCATCAGGCAGCTGGGCCGACGTCCCACCCTCAGTACCATCACTGAGAATATCATCCGGAAATATGGAACACACTTCCTGCTCTCAGCTACATTGGGAGGTGAAGAGGCTTTAACTATATTTGTAGACAAGAGGAGGCTGAGCCGGACAGCAGACCTGACTGACTCCAACAGCACGGCTGTGACTCTGGAGGCGCTCCACCAGCTGGCTGCCTCCTACTTTATAGATCGAGAGAGCACGCTGCGCAAGCTGCACCACCTCCAGATCGCCTCCACTGCCATCAAGGTGACTGAAACAAGGACAGGCCCACTAGGATGCAGTAACTATGACAACCTCGATTCTGTCAGTTCAGTTTTGGTTCAGAGTCCTGAAAACAAGATTCATTTACAAGGGCTTCAAGCCATTCTGCCAGGGTACCTGAGAAGTCGATTTGTCCAGGCAGCTCTCAGCTATATCGGCTGCCACTCTGAGGGCGAATTTAAGTGCAGGAACAACGACTgctggtgtcagtgcagtgtggaTTACCCTCAGTGCAACTGCCCCAGTAAGAACCTGGAGGCCATGCAGGACAGTCTGAGGCTCATTAGAGAGTCTTGGAGCCAAGCCAACCAGGAGTTTGAGGAATCAGaggagTTCCAGAATTTTGTGAGAAGGTTACCAACTTTCTACTCTCTGAACACATCTGCTGTGCAGTACTTTTGGAAAATGGACTCCGGCGTTCACCATCGCTTTCAACTGCTGGAAACTAGCACTCGACAGCTCCTCAGCAAAGCACAGCGGATAGTCAGCAAACTCTTCGCCCTCAGTAAGAGATGCCGAAGTCAGCCCAAAATATCCGTACCCAGAGAGAGgCCTTTCAGCTACTGGTTGAACTACATCCTTTCAATAATGTACTGCAGTGAGAACAACCAGATAGGCACCTACATGGAGGAGATGCGGGCCTGCTCCTGTCAGTATGATACTCCGTCCTGCCAGGGCGTCATTCCATGCACAGTGGGCGACGGGCCCCTTTGTGCTTCATGCTCTTATGAAAACCGTTCCCGGTGTGCTAGCTGCAACCCGGGATACATGCTGAGCCAGGGGACCTGCAGGAACATCATTCCTGACTCCACCGACAACTACATTGGCTTTGAGACAGACCTCCAAGACCTGGAGATGCGCTATCTCCTCCAGAAGCGCGATGGGCGAATCAGCATTCACGCCATGTTTATTAGCAACGATGTAAGGCTCAACAACTGGTTCGATCCCTCGTGGAGGAAGAGGATGCTCCTGACGCTGAAAAGCAACAAGTTTAAGTCCAGTCATGTTCACATGCTGCTCGGCATCTCCCTGCAAATCTGCCTTACTAAGAACAGCACCCTGGAGCCCGTGCTGTCTGTGTACATTAACCCGTTTGGAGGTAGTCACTCCGAGAGCTGGATCATGCCCATAGACCAGAACAATTACCCAGACTGGGAGAGGACCAAGTTAGATATCCCACTTGACTGTTATAACTGGACATTAACTCTGGGAAACAAGTGGAAGACGTTTTTCGAGACGGTGCACGTATACCTGAGGAGCCGCATCAAAGCAGCCTCGGCCCAGGGGAACGGCACCGTCTATTTCGAACCACTGGAGTACATGGACTCCTCGCGGAATCTGGGTTACATGAAAATCAACAGCATGCAGGTGTTTGGTTACAGTATGCACTTTGATCCAGAGGCCATCCAGGATTTGATCCTGCAGCTGGATTACCCGTACACACAGGGCTCGCAGGATTCTGCCCTTCTGCAGCTGCTGGAGATACGAGATCGCGTGAACAGGCTTTCTCCGCCGGGCCAGCAGCCTCTGGACCTGTTCTCCTGCCTACTGCGCCACCGCCTCAAACTCTCCGCCACTGACGTGGTCCGAATTCAATCTGCTTTGCAAGCCTTCAGTGCCAAGCAGCCCAATTCAATGGAGTACGAAACCACCAAACTATGTAGCTAATCAAACACTTTACGCTAATCGTCATCAATTATCTGTTGGTTTTACTGTAGCGGTGACCTGATCGCACCTCTGGGAAATGCTGAACTGCttctggggtcattttctcCCCCTGAGGCATTAGATAGAACTTTCAATAACACAGTGGACCCCTTCAAATCACCACAAAGGGCCCACACTTTctgcctttttctttttaaaattactgttttgatttttagagttttagtaGCAATGGACACGTAGTTCTCATAGAAGTAGGACAGATCCTTATACAGTAGAGTAGGTCAgatgtaaaaatgtagaaaacGGCTCTCACTACCTTTTCGCATGTCTTTTTCATTGCATCACTTACTCAGTGTGGCTTATGTGCGTAACAGAGGCAGTAATCGTGCGATAAGCCCAACATCGTCAGTGTAATCAGGCCCTCCTGCGATGAAAAGGAGTCCAGACTGCTCAACTGTACTGTTCTGTCTGTCAGTCCTGTAACACttacataaatatacagtatctgaTTCAGCAGAAGATGGTTTTGTTGGTAGAAGTATTTTTCAGATATTTGTACAAATATGAATATAGAATGAATTTTGTTGGAATAAAAAACTGATGCGCCAGTCCTAATTATA

Function

symbol description
brinp3a.1 Predicted to be involved in cellular response to retinoic acid; negative regulation of mitotic cell cycle; and positive regulation of neuron differentiation. Predicted to act upstream of or within regulation of cell cycle. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite; endoplasmic reticulum; and neuronal cell body. Is expressed in brain; gill; head; muscle; and trunk. Human ortholog(s) of this gene implicated in coronary artery disease and myocardial infarction. Orthologous to human BRINP3 (BMP/retinoic acid inducible neural specific 3).

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249062.3 True 3510 mRNA 0.50 8 39954473 40009536

Neighbor

gene id symbol gene type direction distance location
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding upstream 360450 39517500 ~ 39594023 (+)
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding upstream 742650 39209814 ~ 39211823 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding upstream 873362 39032127 ~ 39081111 (+)
cth cth,LOC102785392 coding upstream 1520616 38417049 ~ 38433857 (+)
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding upstream 1547176 38403349 ~ 38407297 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 214515 40224051 ~ 40259219 (+)
LOC103040699 LOC103040699,LOC108440142,LOC108271632 coding downstream 263850 40273386 ~ 40276489 (+)
LOC103040381 rgs5a,LOC108441543,LOC107732440,LOC107564083,LOC107685321,LOC107684230 coding downstream 309222 40318758 ~ 40339674 (+)
nos1ap nos1ap,LOC107711121,LOC107551033 coding downstream 407791 40417327 ~ 40567138 (+)
c13h1orf226 nos1ap coding downstream 570840 40580376 ~ 40600295 (+)
G117071 NA non-coding upstream 106638 39839012 ~ 39847835 (+)
G117025 NA non-coding upstream 456115 39497799 ~ 39498358 (+)
G117008 NA non-coding upstream 524901 39429133 ~ 39429572 (+)
G117006 NA non-coding upstream 534680 39387514 ~ 39419793 (+)
G116994 NA non-coding upstream 600685 39353435 ~ 39353788 (+)
G117102 NA non-coding downstream 27764 40037300 ~ 40037531 (+)
G117108 NA non-coding downstream 82059 40091595 ~ 40091844 (+)
G117111 NA non-coding downstream 119556 40129092 ~ 40136727 (+)
G117147 NA non-coding downstream 350804 40360340 ~ 40362577 (+)
G117152 NA non-coding downstream 557672 40567208 ~ 40580304 (+)
G116997 NA other upstream 595085 39358871 ~ 39359388 (+)
LOC103036266 LOC108441345 other upstream 1559943 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 2342151 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 2833146 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 3240589 36657392 ~ 36713884 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 789935 40799471 ~ 40808545 (+)
fam183a NA other downstream 1149651 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 1343965 41353501 ~ 41367729 (+)
G117642 NA other downstream 2342271 42351807 ~ 42355784 (+)

Expression


Co-expression Network