nit2 (nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305)


Basic Information

Item Value
gene id nit2
gene name nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38403349 ~ 38407297 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249083.2
TGAGCGGCCATGGTTGGACACACCGCCGTGTTGTGGTTGGATCAGATCACAGACTTCACAGAAACACTGTAGGTTAACTACAGTTCTGTGTGGTGGATGAGCTGTTTAGGGGAAAGCTGAGAGAGGCACATATCAATGTCTGGTGTTTCAAAGGCAATGTCGAAGTTCAGGCTGGCTGTGGTGCAGCTGGCTGTCACTAAGGTAAAGTCTGATAACCTGCAGCGGGCCTGTAGTCTGGTGAAGGAGGCAGCTGGCCAGGGGGCAAAGGTTGTGGTCCTGCCTGAATGCTTCAACTCCCCATATGGAACAGGTTTCTTTGCAGAGTATGCAGAGAAGATCCCAGGAGAATCAACACAGGCCTTGTCAGAGGCAGCCAAGGAGAGTGGAGTCTTTCTAGTAGGGGGATCTATTCCAGAGGAAGATGGTGAAAAGCTTTTTAACACCTGCTCAGTTTTTGGTCCTGATGGTAAGATACTGGTCAAACACAGGAAGATCCATCTCTTTGACATTGATGTACCAGGAAAAATACGCTTCCAGGAGTCTGAGACATTAAGTCCAGGGTGCAGCTTATCCATGTTTGAAACACcattCTGTAAAGTTGGAGTGGGGATTTGTTATGACATGCGCTTTGCAGAGCTTGCACAGATTTATGCAAGGAAAGGTTGTCAGCTGTTGGTGTATCCTGGTGCCTTCAATATGACCACAGGTCCAGCACACTGGGAGCTGCTTCAGAGGGCGCGGGCATTGGATAACCAGGTGTATGTGGCCACCGCTTCACCAGCAAGAGACGAGACTGCCAGCTATGTGGCCTGGGGTCACAGCACTGTAGTTAACCCTTGGGGTGAGGTGATCACTAAAGCAGGGTCAGAAGAATCTGTGGTTTATGCAGATATTGACCTGCAGTACTTGTCTGATGTGCGTCAGCAGATTCCAATCACAACACAAAGACGTAACGACATATACAGTGTTAGCGCTGTTAACGAGGGCTGAATTGGAGTCGAGAAGCAATTCTGTAGCTTACATGAAGATAAGCTAAGAACAGAGGCACTGTCTACTTGATTTGTTACGTCAGACTGTCGAAGGGGCACAGGTTTAGCCCTATCACAAAATGTGCCTAAATCTCAGTGCAGTGGAGagttgatcattttatttaaagtatttgttaaatttaaaatgctgaaatgttgatattttactgttgtttacGCATCAAATGTGGATTTATGGTGAGATGTCGTTCACATTGAAAATCATGGATCATTTTTGTACACAACCTGTATAATGAAATCTGTATTTAAAGTATACTGTGAGGACTTGAAATTTGCTTTACAAGTATCAATAGGAGGTTTAATTTGTTATCCAAAGAATGCTTTTCAAAAAAATCACTGAAGACAATTTTTTACAGAATAAATGTGAAAAGACTGGAAAAA

Function

symbol description
nit2 Predicted to enable omega-amidase activity. Predicted to be involved in asparagine metabolic process; glutamine metabolic process; and oxaloacetate metabolic process. Predicted to act upstream of or within nitrogen compound metabolic process. Predicted to be located in cytoplasm. Is expressed in pronephric duct. Orthologous to human NIT2 (nitrilase family member 2).

NR:

description
omega-amidase NIT2

GO:

id name namespace
GO:0006807 nitrogen compound metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0050152 omega-amidase activity molecular_function

KEGG:

id description
K13566 NIT2, yafV; omega-amidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249083.2 True 1430 mRNA 0.44 10 38403349 38407297

Neighbor

gene id symbol gene type direction distance location
LOC103035541 plcxd1,LOC103035541,LOC105895009,LOC107673474,LOC107711026,LOC107585164,LOC108441321,LOC107753403,LOC108271842 coding upstream 15303 38381185 ~ 38388046 (+)
jade3 jade3,LOC107711098,LOC107685301,LOC107753402,LOC107582729 coding upstream 26922 38357858 ~ 38376427 (+)
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding upstream 47358 38347868 ~ 38355991 (+)
chst7 chst7,LOC107582727 coding upstream 140446 38247974 ~ 38262903 (+)
fndc9 fndc9 coding upstream 213418 38184325 ~ 38189931 (+)
cth cth,LOC102785392 coding downstream 9752 38417049 ~ 38433857 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding downstream 624830 39032127 ~ 39081111 (+)
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding downstream 802517 39209814 ~ 39211823 (+)
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 1110203 39517500 ~ 39594023 (+)
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding downstream 1547176 39954473 ~ 40009536 (+)
G116730 NA non-coding upstream 169268 38233474 ~ 38234081 (+)
LOC111193782 NA non-coding upstream 516614 37852643 ~ 37886735 (+)
G116580 NA non-coding upstream 602595 37800217 ~ 37800754 (+)
G116574 NA non-coding upstream 730263 37671836 ~ 37673086 (+)
G116553 NA non-coding upstream 966857 37436248 ~ 37436492 (+)
G116837 zranb2,LOC107685308,LOC107726518 non-coding downstream 99484 38506781 ~ 38511435 (+)
G116841 NA non-coding downstream 129546 38536843 ~ 38537047 (+)
G116845 NA non-coding downstream 163107 38570404 ~ 38570657 (+)
G116852 NA non-coding downstream 219497 38626794 ~ 38628164 (+)
G116869 NA non-coding downstream 545930 38953227 ~ 38954811 (+)
LOC103036266 LOC108441345 other upstream 8819 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 791027 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 1282022 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 1689465 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 2043572 36342985 ~ 36359777 (+)
G116997 NA other downstream 951574 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 2392174 40799471 ~ 40808545 (+)
fam183a NA other downstream 2751890 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 2946204 41353501 ~ 41367729 (+)
G117642 NA other downstream 3944510 42351807 ~ 42355784 (+)

Expression


Co-expression Network