cth (cth,LOC102785392)


Basic Information

Item Value
gene id cth
gene name cth,LOC102785392
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38417049 ~ 38433857 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249086.3
AATGGCTGTCAGTGTGCGGGAGGGAGTCAGACGGTTCGCGGGTATAAGACTAATGTTTCTGCTGCTCCGGGTTTCAGTGGTAACCGCGGTCTCCGGTACGCAGGCAGTGTGATTCCTCCCCCCGCGCGTGTTGATCTGCTCTCAGGGACGCGTGTCTCCTCCAGGCCGGTCTGCAGTAAATAAAGCATGGCTAGCGGCAGCGGCAGCGGCGGCGAGTGGCTGTCCGGGTTCAGCTCTTTCGCCACGGACGCGATTCACGTAGGCCAGGAGCCGGAGCAGTGGAACTCCATGGCCGTGGTTCCTCCCATTTCACTCTCCACCACCTTTAAACAGTACGGCCCGGGCAAGCACGCGGGATTTGAGTACAGTCGCAGTGGAAATCCCACACGCAACTGCCTTGAGAAGGCGGTTGCTTCTTTGGATGGAGCTAAGCACTGTGTTGCTCTTGCCTCTGGACTTGCTGCTACTGTGACCGTTACGCACATGCTGAAATCTGGGGATGGAATCGTGTGCATGAATGATGTCTATGGAGGAACCAATCGCTATTTCCAAAGAATAGCTAAAGAAATTGGCTATGATATCTCCTTCGCTGATTGCACAAAGCCTGAAGTCTTAAAGGCAGCTCTTAAGCCTAATACAAAGATGTTGTGGATTGAGACTCCATCAAACCCAACAATGAAGGTTGTGGACATACAAGCATGTTCAGACCTTGCACATGAACAAAACAAAGACATTATTGTAGTTGTGGACAATACCTTCATGTCTGCCTATTTCCAGCGCCCTCTGGCTCTTGGAGCAGACATCTGCATGTATTCTGCAACAAAGTACATGAACGGACACAGTGATGTCGTTATGGGGCTGATTTCTGTTAACCGCGAGGACCTCTATGAACGACTGAAGTTTTTACAGAATGCTTTGGGAGCTGTTCCGTCCCCATTTGACTGCTACATGTGCAATCGAGGACTGAAGACTCTGCACCTGAGAATGAAGCAGCACTTCAAGAACGCAATGGCTGTGGCTGAGTTTTTAGAACGGGACCCCAGGGTGGACAAAGTCATTTTCCCAGGTCTACCTTCCCACCCTCAGCATGAGCTAATGAAGAAACAGTGCACGGGATGCCCCGGCATGATTACCTTCTACATTAAAGGCAAACTGGAGCATGCCACAGCTTTCCTCAATAACCTCAAGTTATTTGCACTTGCTGAAAGTCTGGGGGGTTATGAGAGTCTGGCGGAGCATCCAGCGATTATGACTCATGCTTCAGTGCCAGAAAACGAGCGGGTGGTGCTGGGCATCAGTGATACACTCATTCGTCTCTCTGTGGGACTGGAAGATGAAGAGGACATTATCGCAGACCTGGACCAAGCTCTCGGTGCTGCTcatccAAAGAAATGAACTCAACAGGATGGGCCAGGAGCTACAACGCCTTCTCTAATGAGCAGAGGAAATTTCTTACAATCGgcacatgtttattttatagataGTATGTAATGGTTATGCttgaaataatacatttttacatcagggatcaaattaaaacagaattaGTGTGCTTCCATAGATCCACAATTATTTGTATCCATTTTTTCCCCACACCAACCAGGGGACATCTGAGATTTAAGGTACATGCCATCTTACTTAATGTTTGCTGCTTTTACATTTATCTCTTTGCTGATTGTGTAGTAATTGGATTTGCAGGTGTGATAGTTGGCTCCTATATTGGCGTGGCCTTAAGGGCATTAGGGAAATCTAAAAGTGAATGGTAGAAGGGTGAGAAAAGGGAATTGTGCTCTGATGAGTTAATTTTATTTCCGTCTTCATAAACACTGAATCTGGGACTGTATCTGCGTGATTGGAAGTGATCTTACATCATCTGATACTGTAGAAGTAGTTGCATTCTCATTCCGGG

Function

symbol description
cth Predicted to enable cystathionine gamma-lyase activity and pyridoxal phosphate binding activity. Predicted to be involved in cysteine biosynthetic process via cystathionine and transsulfuration. Predicted to act upstream of or within cysteine biosynthetic process. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in amino acid metabolic disorder and cystathioninuria. Orthologous to human CTH (cystathionine gamma-lyase).

NR:

description
PREDICTED: cystathionine gamma-lyase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249086.3 True 1909 mRNA 0.48 12 38417049 38433857

Neighbor

gene id symbol gene type direction distance location
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding upstream 9752 38403349 ~ 38407297 (+)
LOC103035541 plcxd1,LOC103035541,LOC105895009,LOC107673474,LOC107711026,LOC107585164,LOC108441321,LOC107753403,LOC108271842 coding upstream 29003 38381185 ~ 38388046 (+)
jade3 jade3,LOC107711098,LOC107685301,LOC107753402,LOC107582729 coding upstream 40622 38357858 ~ 38376427 (+)
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding upstream 61058 38347868 ~ 38355991 (+)
chst7 chst7,LOC107582727 coding upstream 154146 38247974 ~ 38262903 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding downstream 598270 39032127 ~ 39081111 (+)
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding downstream 775957 39209814 ~ 39211823 (+)
LOC103022251 brinp3a.2,LOC108440126,LOC107711116,LOC107732449,LOC107685312,LOC107667973,LOC107585215 coding downstream 1083643 39517500 ~ 39594023 (+)
LOC103028032 brinp3a.1,LOC108441513,LOC107585174,LOC107711117,LOC107732447,LOC107685317 coding downstream 1520616 39954473 ~ 40009536 (+)
LOC103027818 rgs8,LOC108441527,LOC108271678,LOC107711118,LOC107551030,LOC107732448,LOC107564081 coding downstream 1790194 40224051 ~ 40259219 (+)
G116730 NA non-coding upstream 182968 38233474 ~ 38234081 (+)
LOC111193782 NA non-coding upstream 530314 37852643 ~ 37886735 (+)
G116580 NA non-coding upstream 616295 37800217 ~ 37800754 (+)
G116574 NA non-coding upstream 743963 37671836 ~ 37673086 (+)
G116553 NA non-coding upstream 980557 37436248 ~ 37436492 (+)
G116837 zranb2,LOC107685308,LOC107726518 non-coding downstream 72924 38506781 ~ 38511435 (+)
G116841 NA non-coding downstream 102986 38536843 ~ 38537047 (+)
G116845 NA non-coding downstream 136547 38570404 ~ 38570657 (+)
G116852 NA non-coding downstream 192937 38626794 ~ 38628164 (+)
G116869 NA non-coding downstream 519370 38953227 ~ 38954811 (+)
LOC103036266 LOC108441345 other upstream 22519 38390277 ~ 38394530 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 804727 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 1295722 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 1703165 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 2057272 36342985 ~ 36359777 (+)
G116997 NA other downstream 925014 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 2365614 40799471 ~ 40808545 (+)
fam183a NA other downstream 2725330 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 2919644 41353501 ~ 41367729 (+)
G117642 NA other downstream 3917950 42351807 ~ 42355784 (+)

Expression


Co-expression Network