rp2 (rp2,LOC107753404,LOC107685300,LOC107711097)


Basic Information

Item Value
gene id rp2
gene name rp2,LOC107753404,LOC107685300,LOC107711097
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38347868 ~ 38355991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249096.3
GGGGTCAGGGGGCGAATTGGGACGGAGCCTGGGAGCAGAGCTCTTGAGAGCGGAGTCCTGAGTGAGTAGAGCGCGGAGGTATAGCTAGGTGTTGATTGGTTAGCTAAGCTactcctctctcgctctctctctctctcagtggaaGGAAACGGGAAATTCGCCGTGTGTTTGCGCAGTGTTTACCTAGTGCTTTGAGATTTGTTAGGGGGACAACGgagatatttttttcccttcttctgTTTTCCAGGAGATCTGGAGACTGCTTCTGTTTATCTGACTGACTGAGAGCCTTCGTCGTTATTTGGATAGATAGAATAGTTAACCTAACGCTAATACTTGACAATGGGGTGCTTCTTCTCCAAGAAATCCAGGAGAAAATCTCCTGTCAAAGAGCCCGGCGTGCCCGCAGCGGAGAAGGACGCCACGGGTAATAACGTGGCTGAAAGCGCCGCGCCGAGCGGCACCGAGCAAACAGCGCCCAAACAATACAGCTGGGACAAACGGGAGAAGgtTGACCCCAAGGACTTCATGCTAACTGGTGTGAAGGATGCCACCGTGGGTCGTCTGCCAGGAAAACTGAATGGCCAGCAGTTTGTTATTCAGGACTGTGAGAACTGCAACATCTTTGTGTTTGACCACTCAGCAACAGTGACCATTGACGACTGTGTAAACTGTCGCATAGTGCTTGGACCAGTCAAAGGCAGTGTGTTCTTCCGCGACTGCAAAGACATTAAGTGTGTGGTGGCCTGCCAGCAGTTCCGGACAAGGGACTGCAAAAAGATGGatgtctttttgtgttgtgCCACTCAGCCCATCATTGAATCGTCCACCAGCATGAAGTTTGGCTGCTTCCAGTACTATTATCCAGATCTGGCCTTCCACTTCAAAGATGCAGGTCTGAGCATCTTCAACAACAACTGGAGCAATATACATGATTTCACACCCGTCTCTGGAGAAACCAATTGGAGTCTACTACCAGAGGATGCTGCGGTGTTGGAGTATGTGCCTCTACCTGACTCTGAGTCAGAGTTTAAGTCTGTACGTATCTCTACTGAAGTAAATCGGAGTATTGTGCCCATGACCAAAGGTGGGAGGCGTAAGGAGAGTGAGGAGTCCTGCCTGTTTGTGTTCTTTGCTGGAGACTACACCACAGCCAACGCTCGCAAGCTTATTGACGAGaCAACTGCCAAAGGTTATACACTCATCCAAACCAAAGAAGTCTCCATGCGTCCAGAAGACGTGAACAGAGTGTTCCAGAACAATGCTGAGGGTCTGACTGAGTGGACCTCAAATGGTCCTGTTGTAGCCCTTGAGCTAAATGGAGATGGTGTGGTGGAGGCCTGCAGAAGCATTGCCAATGAGATTTTTAATGGAACAAAGGTCTTCGTTTCTGAGAATAAATCTTCAGCTTCTCGGGACGTTGACAACTTTTTCAACTTTGCTGACATGCAGATGGGATTGTAAAtcgaatgaaagaaaaaacgttttatacattttgtacTTCCAGTATTGTGAGTTAGAATGAGGGTTTTTTTCCTAATCTAGtaatgagatgagatgaaatGGGTGTAGTTATTGACATCTCTCATGTTGAAGGGTGTTTAATCTATTTACACTTACTCGAGTAATTAGTGctgctaaaaatattttttgaggaTTAGAACATTTTTATGCTGTTAATGCCATTTTACTGTGTTTGTACACAGTTGCGTGCAAAATTTGTAGAGGCAGTGAAAATCTAAAACAGATGAATCTGGAGAGTTCAGACTCTAAATAAAGAATACTGTGGCCATTGTCAATCATGCTGaaaataataacttaatgtatttatttatgtgtttttagaaATGTAAAACTGGAAATAGTGTGTTCCGTTTGTTGGTATGCATTTCCTATACATGTTTGTAGCCTGtcaatgtgtctgtgtgtgtgtgtatataggcCTAGATGTGGACAATGTAAAGTCTGAAATCAGAATGATTTATAATATTCCTAATATTTGAGAGCCTATATTTCTTTATGAAAtactgtttgtttaatttttttggatCATTTATGCTCAGTCAGAATGAGAATGTCAGAATGTCTGTTATTTATGAAATGCTTTGAAAGGAATATCAAAAGGTAATTTCACAGTAATTAGATCTACAGTAATTGAATCTACTGCTCAGAGGAGTTCActgtttgtttgctgtttttatatgAATGTTTTAATGAGCCCAGTTTTAGTCCTGTGACCAAAAacaatcatttttatttgtacaaaTGAGAGAAATGCCTCACAATGTACTTTTATACGTTTGAATCATTCTTATTTGTATATGGCAGTTTTGTAGAAATGAATGTAAACTGTAATTTATcaatatattaatttgtttaaagaCTT
>XM_022675807.1
CCGGCTGAGCTGAGCTGGCGAGTTTGGGTTAGTTTCGACTGCCGTCGCCGCCGCTACCATTAAACTGGCCGTAATTATAAAGTAGAGCGTCTTATCGGCTTAAGGCGACATGTAGCCACAGCTAGgctgttagctagttagctaacgtgTTCGTGTGGCAGCCCTCCAGATATCGAGCTGTGTGCGGATTAATTCGTAAACAGCCAGGCCACGGAGGTCCACTTCCTTCAGGGCTTACTACAACAGGAGACTGGGTGACCAGGTTGAGgtTGACCCCAAGGACTTCATGCTAACTGGTGTGAAGGATGCCACCGTGGGTCGTCTGCCAGGAAAACTGAATGGCCAGCAGTTTGTTATTCAGGACTGTGAGAACTGCAACATCTTTGTGTTTGACCACTCAGCAACAGTGACCATTGACGACTGTGTAAACTGTCGCATAGTGCTTGGACCAGTCAAAGGCAGTGTGTTCTTCCGCGACTGCAAAGACATTAAGTGTGTGGTGGCCTGCCAGCAGTTCCGGACAAGGGACTGCAAAAAGATGGatgtctttttgtgttgtgCCACTCAGCCCATCATTGAATCGTCCACCAGCATGAAGTTTGGCTGCTTCCAGTACTATTATCCAGATCTGGCCTTCCACTTCAAAGATGCAGGTCTGAGCATCTTCAACAACAACTGGAGCAATATACATGATTTCACACCCGTCTCTGGAGAAACCAATTGGAGTCTACTACCAGAGGATGCTGCGGTGTTGGAGTATGTGCCTCTACCTGACTCTGAGTCAGAGTTTAAGTCTGTACGTATCTCTACTGAAGTAAATCGGAGTATTGTGCCCATGACCAAAGGTGGGAGGCGTAAGGAGAGTGAGGAGTCCTGCCTGTTTGTGTTCTTTGCTGGAGACTACACCACAGCCAACGCTCGCAAGCTTATTGACGAGaCAACTGCCAAAGGTTATACACTCATCCAAACCAAAGAAGTCTCCATGCGTCCAGAAGACGTGAACAGAGTGTTCCAGAACAATGCTGAGGGTCTGACTGAGTGGACCTCAAATGGTCCTGTTGTAGCCCTTGAGCTAAATGGAGATGGTGTGGTGGAGGCCTGCAGAAGCATTGCCAATGAGATTTTTAATGGAACAAAGGTCTTCGTTTCTGAGAATAAATCTTCAGCTTCTCGGGACGTTGACAACTTTTTCAACTTTGCTGACATGCAGATGGGATTGTAAAtcgaatgaaagaaaaaacgttttatacattttgtacTTCCAGTATTGTGAGTTAGAATGAGGGTTTTTTTCCTAATCTAGtaatgagatgagatgaaatGGGTGTAGTTATTGACATCTCTCATGTTGAAGGGTGTTTAATCTATTTACACTTACTCGAGTAATTAGTGctgctaaaaatattttttgaggaTTAGAACATTTTTATGCTGTTAATGCCATTTTACTGTGTTTGTACACAGTTGCGTGCAAAATTTGTAGAGGCAGTGAAAATCTAAAACAGATGAATCTGGAGAGTTCAGACTCTAAATAAAGAATACTGTGGCCATTGTCAATCATGCTGaaaataataacttaatgtatttatttatgtgtttttagaaATGTAAAACTGGAAATAGTGTGTTCCGTTTGTTGGTATGCATTTCCTATACATGTTTGTAGCCTGtcaatgtgtctgtgtgtgtgtgtatataggcCTAGATGTGGACAATGTAAAGTCTGAAATCAGAATGATTTATAATATTCCTAATATTTGAGAGCCTATATTTCTTTATGAAAtactgtttgtttaatttttttggatCATTTATGCTCAGTCAGAATGAGAATGTCAGAATGTCTGTTATTTATGAAATGCTTTGAAAGGAATATCAAAAGGTAATTTCACAGTAATTAGATCTACAGTAATTGAATCTACTGCTCAGAGGAGTTCActgtttgtttgctgtttttatatgAATGTTTTAATGAGCCCAGTTTTAGTCCTGTGACCAAAAacaatcatttttatttgtacaaaTGAGAGAAATGCCTCACAATGTACTTTTATACGTTTGAATCATTCTTATTTGTATATGGCAGTTTTGTAGAAATGAATGTAAACTGTAATTTATcaatatattaatttgtttaaagaCTT

Function

symbol description
rp2 Predicted to enable GTPase activator activity. Acts upstream of or within animal organ development; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Predicted to be located in cell projection and plasma membrane. Predicted to be active in cilium and periciliary membrane compartment. Is expressed in several structures, including fertilized egg; liver and biliary system; pleuroperitoneal region; sensory system; and trunk. Used to study retinitis pigmentosa 2. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 2. Orthologous to human RP2 (RP2 activator of ARL3 GTPase).

NR:

description
protein XRP2-like

GO:

id name namespace
GO:0000902 cell morphogenesis biological_process
GO:0048793 pronephros development biological_process
GO:0035845 photoreceptor cell outer segment organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0010842 retina layer formation biological_process
GO:0001947 heart looping biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K18272 RP2; protein XRP2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249096.3 True 2386 mRNA 0.42 5 38347868 38355991
XM_022675807.1 False 2144 mRNA 0.41 5 38348749 38355991

Neighbor

gene id symbol gene type direction distance location
chst7 chst7,LOC107582727 coding upstream 84965 38247974 ~ 38262903 (+)
fndc9 fndc9 coding upstream 157937 38184325 ~ 38189931 (+)
nipa2 nipa2,LOC107673599,LOC107582725,LOC107716965 coding upstream 182904 38155099 ~ 38164964 (+)
nipa1 nipa1 coding upstream 193709 38147942 ~ 38154159 (+)
gabrg3 gabrg3 coding upstream 518337 37620036 ~ 37829531 (+)
jade3 jade3,LOC107711098,LOC107685301,LOC107753402,LOC107582729 coding downstream 1867 38357858 ~ 38376427 (+)
LOC103035541 plcxd1,LOC103035541,LOC105895009,LOC107673474,LOC107711026,LOC107585164,LOC108441321,LOC107753403,LOC108271842 coding downstream 25194 38381185 ~ 38388046 (+)
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding downstream 47358 38403349 ~ 38407297 (+)
cth cth,LOC102785392 coding downstream 61058 38417049 ~ 38433857 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding downstream 676136 39032127 ~ 39081111 (+)
G116730 NA non-coding upstream 113787 38233474 ~ 38234081 (+)
LOC111193782 NA non-coding upstream 461133 37852643 ~ 37886735 (+)
G116580 NA non-coding upstream 547114 37800217 ~ 37800754 (+)
G116574 NA non-coding upstream 674782 37671836 ~ 37673086 (+)
G116553 NA non-coding upstream 911376 37436248 ~ 37436492 (+)
G116837 zranb2,LOC107685308,LOC107726518 non-coding downstream 150790 38506781 ~ 38511435 (+)
G116841 NA non-coding downstream 180852 38536843 ~ 38537047 (+)
G116845 NA non-coding downstream 214413 38570404 ~ 38570657 (+)
G116852 NA non-coding downstream 270803 38626794 ~ 38628164 (+)
G116869 NA non-coding downstream 597236 38953227 ~ 38954811 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 735546 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 1226541 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 1633984 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 1988091 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 2359808 35982119 ~ 35988060 (+)
LOC103036266 LOC108441345 other downstream 34286 38390277 ~ 38394530 (+)
G116997 NA other downstream 1002880 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 2443480 40799471 ~ 40808545 (+)
fam183a NA other downstream 2803196 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 2997510 41353501 ~ 41367729 (+)

Expression


Co-expression Network