jade3 (jade3,LOC107711098,LOC107685301,LOC107753402,LOC107582729)


Basic Information

Item Value
gene id jade3
gene name jade3,LOC107711098,LOC107685301,LOC107753402,LOC107582729
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38357858 ~ 38376427 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249097.3
CATGGGCGGGGTTTAGGACCCAGCGGCCTGCACTGTACAATAGGACTGTTGTGTCGTGGTGGTGGTGGACGGCAGATTGCAGCTTCGAGAGACTGACAGTGTGGAGCAGAAATAGACAAAAAACAACCCGGATACTTTCATTAACAGCTCGCCCGAAGACTTATCTTGGAGAGCGGTGTGCACACGGCGATTTCAGCCCAGGCGTGGATCTGTAGAGCCGGTGAGAGGTCTAAGGGATGAGAGGTGGATGACGAGAACAGTCCTAAGGAGTAACCTAGCATGCTCTACGACTTGAAATTTATGGATATGACAGGATGAAACGACTCAGGACTTCAAGCAGCAGTGACAGTTCAGACAATGAAGCAGCTCCCTCCACCTCCTTCTCTTCAAACAAATATGGAAGCAAACCTGGAACCCCCGCCTCTGCGCAGAAAAAGCCGGCAGAGGTGTTCAGAAAAGACCTGATCAGTGCCATGAAGCTGCCAGACTCTCATCACATCTCTCCAGAAGACTACTACCTGCTGGCTGACACATGGAGACAAGAGTGGGAGAAAGGTGTACAGGTCCTAGCCAGTCCAGATACCATTCCCCAGCCCTCTATAAGGATAATAGCTGAGAAACCGAAGGAAATTCTGTTCTCCAGACAAAGGAAGTACATCCAGTGCTGGAGTCAGGATTCCACCGAAACTGGTTATGTGAACATTAAAGAGCTGGCTGAGGCCATGTGCAGATATGACCTGGACGACATGGACCTTTACTGGCTGCAAGAGCTCAACATAGAGTTGGGTCAGATGGGGGAGGGGTTCATGGACGAGCTAACCATGGAGCGAGCGATGGAGGCTCTTGAGCGGAAGTGCCATGATAACATGAACCATGCTATAGAAACTGAAGAAGGGCTTGGAATTGAGTACGATGAGGACGTCATCTGTGACGTGTGCCGCTCGCCTGATAGCGAGGAAGGAAATGATATGGTCTTCTGCGACAAGTGCAACATCTGCGTGCACCAGgCTTGCTATGGCATTGTGAAGGTTCCTGATGGAAACTGGCTGTGCAGAACCTGTGTGCTTGGCATCGACCCGCAGTGCATTCTGTGTCCCAAAAAGGGAGGTGCCATGAAGGCCACACGAGCAGGCACAAAGTGGGCACACGTTAGCTGTGCCCTCTGGATACCTGAGGTGAGCATTGCTTGTCCGGAGAGGATGGAGCCAATCACCAAAGTGTCTCACATTCCACCCAGCCGCTGGTCTCTGATCTGTAGCCTCTGTAAACTGAAGACTGGAGCCTGCATACAGTGTTCAGTAAAGAACTGCACCATTCCATTTCACGTCACCTGCGCCTTCGAACACAGCCTGGAGATGAAGACCATCCTGGATGAGGGAGACGAGGTCAAGTTTAAATCCTACTGCCTGAAGCACAGCAAGTCCAAAACAGGAGAGTCTGGCTTGAGCCCAGCCAGACACAAACCCACAGAGACAGAAAAGGTGGGACTGAGGGCGCAGAAGCTCCAGGAACTAGAGGAGGAGTTTTATAAGTTGGTGCAGCCTGAGGAAGTAGCCCAAGATCTGGGGCTGCCTCCCCACTTGCTGGACTTTATCTACCAGTACTGGAAGCTGAAGAGGAAGACCAACTTCAATAAAGCACTGCTGCCACCCAAAGAGGATGAGGAGAACCTGCTGTTGCAACCACAGGAGGACAGCATCCACACACGCATGCGCATGTTCATGCATCTACGGCAAGACCTGGAGAGGgtAAGAAACTTGTGCTACATGGTGAGTCGGAGAGAGAAGCTTAAACTGTCTCAGAGTAAAGCCCAGGAGCAGATCTTCAATCTTCACGTCAAACTCGTAAACCAAGAACTCTCTGCAGGGCTGCCGGTGTCCTCAGCTGTGGAAAACCTGCTCTTCCGACCACCGCCGAGGATAACTCTCAAACTCAAAATGCCCAAAGTGTCACAGGGCAACAACAAACCCAGCGCCAAATCAGGAAATGGGCCACTGTGCCCAGACAACAGTAGTAATGTGTATGACCTCGGTGGCACGGGGGTCGGGCAGGGAAAACCTCAGCTCCACCACAGCCGTGCTCGGCGGGAGGAGCGCACCAACGGCCTTCTAATTGCAGCGCGACGggacagcagcagcaccaccaaTACTTTACCAGTGCCCATTAAACCATCAGGCAAGCCTCTGGCATTACATGCTGCCCTCCATGGCCATTCGTCCAATGGTAAGGGCAAGCCTGAACAAGAAAGGGACCGTCTTCTGAAGCCTAACGGCGTCATGGAGAAGCCTGTAGTTCAGAGAGACACTTCCTACCAGATGCCTTCTGATCAGTCCACGTGCAATGAGGTTTCTGGGAAGAGCCAGCCAGGGAGTTTTCATAAAACCGCCATAGAACATTTTGGTAGATCCTTCAAAGAGGCAACCGTCAACCTGGTACGGACTACAGAAGACTTCTGGACCGCCGAGAAGAGTGCACGCAAACTCATCAGCAGCAAAGAGCGGACAAACTGTGCTAAACCTGTCGCTGAGCGACCGGTAGGTGGCGCCAGAACGTACCAGGACAGTGACGGGTACTGCCCCGACCTGGAGCTCAGTGACTCTGAGCCTGAGGCCAAGGGCAAGAGACTGCGGGCAGGCAAAGGACCAAGCGGGAGAAGCCCATCAGCAATCTACAGCCGTGGTGGCAGTCGAGCGAAAGTGACTTTAGGCTCCAGGACAGCAGTGCAGAGGTGACACACCTGAAAAATGCAGCCTCAGTCCTTCAGACCCGCTGCTCTGGGTCTGTCACCGCAATGCTCTGGCGGTCCTAAGAAGTGCCACACTCCAAGAAATCCTTGTTGAGGAGGAGCCTTTGATTGCTCTGGCCATTGAGTCAAGCCATCACAGAACGAAGGTCCAGTAATCCTGCAGGGTCAGAGTTCATACCAAAAAAAGGGACAGTAAAAAACAAAGTCCCTGGCTTAGTATCCGAGGTCGCTGCTTTCCCTCTGGTTCAGCATTGCAGTTCCTCTGCTTCTGCTCAGAGTAACAGGGTTTCAGCTGCAGACTGACTCCACAGTACAGACAGGCCTTCTAGCAGTgttgctgtgtatatatactggttacaaaaaaagaacatttgcttttaggttgtgtgtgtatatatagtagcTCATTTCAAGGGTTGTGGAAGTCATGGTTGAAGTAACTTCTACATGCTGATAAGTCCTTGATACGTCCTTGATCCCTAtggttatgcaaataaataaaagcaaaagaaCTTCAGTGTTTTGAGTCTCACAAATTGGTTGAAGGTAGCAGCTGGTTGCTTGGCTTTTCTTTGCTCTTTCGcgcttttttttgtgttttcattcaaTCTTTTGCTTTCACTGTGTTAGCATAAGCATGCTTGGCACATTGTGTCTTTTTATTCCcttttttatgtcattttcGGTCCAAAATGGTAGttcatctgttttgttttcagaCTTGGCCAACAACACTTTGTATTATTCTCTTTCATGAGAATCATTTTCAAGAGATTTTGTTTTTGGAATATATGCTTGAAATCTGAGGTACACAGTCCCCACTTTGAAAGTTCAAAAATAATAGGAATGTTCTTTAATTGTGGAAGCTTCCAGACCTGTTTAGTGTTTTGACCATCCAGGTCAAGTATGCAGAAAAAAAGCATGTGGCCACTAGGGGACAGTGTGGGTTTAGAGTAATTGGATCAAGCACTCATACTGATGAACCATGATTGTCTAATAAGCAGTAAATGCCTACTTGACCAAGTAAATGTTTCATATGCAAGTTTAACAGAGGCTTAAAACACCAGAACCAcagtatactgttttttttttctacattaggGCAGTGAAATGAGGGATGCTTTACCCAATGCAGGAGTTGTCTGTTTCAATGTTACTATTTGACAATTTCTAAGCTTTGGGAATATAAAATTGCTGCATTGAGAAAGATTCCCTTCGTTTCAGCCTTATTGGGCTTTGAGGTGTTCCCATCAGCAACTCTACTTCACAATACAAACAGTACAAACAGTGTTTAGAATGCATAGATGGAGCTTTATGTTCCACTGACTGAATGAATGAGTTTAGGTAAGTTGAAGTCATGTTTCTGCCtgaatcaataataatataaattttatttttttacaccctGTGCTCGGCTTGTGGAATGAATCTGCACTTGCACCCCTAGTACTTACCTGCAATAATCCTCTGCAGCAAGCTGATGCTTCGACAGTGCCAACATCTGCACGGTTTAAACGTGCAGAGGTATTCTTTTTGTTCTCGTCATTGGTTTCAGTGTTCCTTCGTGTTTGTATGCGAGTGTTAGGATCCATGATTCAGATTTGTTcaaagtttttactttttttcctgcGTTTGAGTCTGAATACTGAGGGTATCAGTGTCTTCATGTAATGCCTGTTCACATCCTCAGGTTTGAGAGATGCATTGAGCGCCACAATATCACACGTTTATGTGTGTGCAATACGTACCTCTACGTAGTTGTAGAGTAAGTGCAGCAAGATTTGTGCAGTCAACTGGTTTCTTTATATGTTCCATGAACTACTTCCAGGAAGACCTCAAATGACGTACTGTGTTACTAGCAGCCAATGGAAAACACTGTAACAACGTGCATGAACTATGCGTCATGTTTTAAATAGAAGAACTTTCCTTTTTCGTTACCATTTTTACTTGACACTACATAATGAAAAaggcaatatgttttttttttgtttttttttgtaagatgaAGCCCTTTTCAATAAActtcaaaaatataaa
>XM_007249098.3
ATTACATGGGCGGGGTTTAGGACCCAGCGGCCTGCACTGTACAATAGGACTGTTGTGTCGTGGTGGTGGTGGACGGCAGATTGCAGCTTCGAGAGACTGACAGTGTGGAGCAGAAATAGACAAAAAACAACCCGGATACTTTCATTAACAGCTCGCCCGAAGACTTATCTTGGAGAGCGGTGTGCACACGGCGATTTCAGCCCAGGCGTGGATCTGTAGAGCCGGTGAGAGGTCTAAGGGATGAGAGGTGGATGACGAGAACAGTCCTAAGGAGTAACCTAGCATGCTCTACGACTTGAAATTTATGGATATGACAGGATGAAACGACTCAGGACTTCAAGCAGCAGTGACAGTTCAGACAATGAAGCTCCCTCCACCTCCTTCTCTTCAAACAAATATGGAAGCAAACCTGGAACCCCCGCCTCTGCGCAGAAAAAGCCGGCAGAGGTGTTCAGAAAAGACCTGATCAGTGCCATGAAGCTGCCAGACTCTCATCACATCTCTCCAGAAGACTACTACCTGCTGGCTGACACATGGAGACAAGAGTGGGAGAAAGGTGTACAGGTCCTAGCCAGTCCAGATACCATTCCCCAGCCCTCTATAAGGATAATAGCTGAGAAACCGAAGGAAATTCTGTTCTCCAGACAAAGGAAGTACATCCAGTGCTGGAGTCAGGATTCCACCGAAACTGGTTATGTGAACATTAAAGAGCTGGCTGAGGCCATGTGCAGATATGACCTGGACGACATGGACCTTTACTGGCTGCAAGAGCTCAACATAGAGTTGGGTCAGATGGGGGAGGGGTTCATGGACGAGCTAACCATGGAGCGAGCGATGGAGGCTCTTGAGCGGAAGTGCCATGATAACATGAACCATGCTATAGAAACTGAAGAAGGGCTTGGAATTGAGTACGATGAGGACGTCATCTGTGACGTGTGCCGCTCGCCTGATAGCGAGGAAGGAAATGATATGGTCTTCTGCGACAAGTGCAACATCTGCGTGCACCAGgCTTGCTATGGCATTGTGAAGGTTCCTGATGGAAACTGGCTGTGCAGAACCTGTGTGCTTGGCATCGACCCGCAGTGCATTCTGTGTCCCAAAAAGGGAGGTGCCATGAAGGCCACACGAGCAGGCACAAAGTGGGCACACGTTAGCTGTGCCCTCTGGATACCTGAGGTGAGCATTGCTTGTCCGGAGAGGATGGAGCCAATCACCAAAGTGTCTCACATTCCACCCAGCCGCTGGTCTCTGATCTGTAGCCTCTGTAAACTGAAGACTGGAGCCTGCATACAGTGTTCAGTAAAGAACTGCACCATTCCATTTCACGTCACCTGCGCCTTCGAACACAGCCTGGAGATGAAGACCATCCTGGATGAGGGAGACGAGGTCAAGTTTAAATCCTACTGCCTGAAGCACAGCAAGTCCAAAACAGGAGAGTCTGGCTTGAGCCCAGCCAGACACAAACCCACAGAGACAGAAAAGGTGGGACTGAGGGCGCAGAAGCTCCAGGAACTAGAGGAGGAGTTTTATAAGTTGGTGCAGCCTGAGGAAGTAGCCCAAGATCTGGGGCTGCCTCCCCACTTGCTGGACTTTATCTACCAGTACTGGAAGCTGAAGAGGAAGACCAACTTCAATAAAGCACTGCTGCCACCCAAAGAGGATGAGGAGAACCTGCTGTTGCAACCACAGGAGGACAGCATCCACACACGCATGCGCATGTTCATGCATCTACGGCAAGACCTGGAGAGGgtAAGAAACTTGTGCTACATGGTGAGTCGGAGAGAGAAGCTTAAACTGTCTCAGAGTAAAGCCCAGGAGCAGATCTTCAATCTTCACGTCAAACTCGTAAACCAAGAACTCTCTGCAGGGCTGCCGGTGTCCTCAGCTGTGGAAAACCTGCTCTTCCGACCACCGCCGAGGATAACTCTCAAACTCAAAATGCCCAAAGTGTCACAGGGCAACAACAAACCCAGCGCCAAATCAGGAAATGGGCCACTGTGCCCAGACAACAGTAGTAATGTGTATGACCTCGGTGGCACGGGGGTCGGGCAGGGAAAACCTCAGCTCCACCACAGCCGTGCTCGGCGGGAGGAGCGCACCAACGGCCTTCTAATTGCAGCGCGACGggacagcagcagcaccaccaaTACTTTACCAGTGCCCATTAAACCATCAGGCAAGCCTCTGGCATTACATGCTGCCCTCCATGGCCATTCGTCCAATGGTAAGGGCAAGCCTGAACAAGAAAGGGACCGTCTTCTGAAGCCTAACGGCGTCATGGAGAAGCCTGTAGTTCAGAGAGACACTTCCTACCAGATGCCTTCTGATCAGTCCACGTGCAATGAGGTTTCTGGGAAGAGCCAGCCAGGGAGTTTTCATAAAACCGCCATAGAACATTTTGGTAGATCCTTCAAAGAGGCAACCGTCAACCTGGTACGGACTACAGAAGACTTCTGGACCGCCGAGAAGAGTGCACGCAAACTCATCAGCAGCAAAGAGCGGACAAACTGTGCTAAACCTGTCGCTGAGCGACCGGTAGGTGGCGCCAGAACGTACCAGGACAGTGACGGGTACTGCCCCGACCTGGAGCTCAGTGACTCTGAGCCTGAGGCCAAGGGCAAGAGACTGCGGGCAGGCAAAGGACCAAGCGGGAGAAGCCCATCAGCAATCTACAGCCGTGGTGGCAGTCGAGCGAAAGTGACTTTAGGCTCCAGGACAGCAGTGCAGAGGTGA

Function

symbol description
jade3 Predicted to enable metal ion binding activity. Predicted to be involved in histone H3 acetylation; histone H4-K5 acetylation; and histone H4-K8 acetylation. Predicted to be part of histone acetyltransferase complex. Orthologous to human JADE3 (jade family PHD finger 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein Jade-3

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22156 JADE3; protein Jade-3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249097.3 True 4783 mRNA 0.47 12 38357862 38376427
XM_007249098.3 False 2733 mRNA 0.53 12 38357858 38374376

Neighbor

gene id symbol gene type direction distance location
rp2 rp2,LOC107753404,LOC107685300,LOC107711097 coding upstream 1867 38347868 ~ 38355991 (+)
chst7 chst7,LOC107582727 coding upstream 94955 38247974 ~ 38262903 (+)
fndc9 fndc9 coding upstream 167927 38184325 ~ 38189931 (+)
nipa2 nipa2,LOC107673599,LOC107582725,LOC107716965 coding upstream 192894 38155099 ~ 38164964 (+)
nipa1 nipa1 coding upstream 203699 38147942 ~ 38154159 (+)
LOC103035541 plcxd1,LOC103035541,LOC105895009,LOC107673474,LOC107711026,LOC107585164,LOC108441321,LOC107753403,LOC108271842 coding downstream 4758 38381185 ~ 38388046 (+)
nit2 nit2,LOC107582734,LOC107585165,LOC107673472,LOC107685305 coding downstream 26922 38403349 ~ 38407297 (+)
cth cth,LOC102785392 coding downstream 40622 38417049 ~ 38433857 (+)
opa1 opa1,LOC107711112,LOC107582739,LOC107673572,LOC107585173 coding downstream 655700 39032127 ~ 39081111 (+)
hes1 hes1,her6,LOC107711114,LOC107680502,LOC107722674,LOC107685314,LOC107582845 coding downstream 833387 39209814 ~ 39211823 (+)
G116730 NA non-coding upstream 123777 38233474 ~ 38234081 (+)
LOC111193782 NA non-coding upstream 471123 37852643 ~ 37886735 (+)
G116580 NA non-coding upstream 557104 37800217 ~ 37800754 (+)
G116574 NA non-coding upstream 684772 37671836 ~ 37673086 (+)
G116553 NA non-coding upstream 921366 37436248 ~ 37436492 (+)
G116837 zranb2,LOC107685308,LOC107726518 non-coding downstream 130354 38506781 ~ 38511435 (+)
G116841 NA non-coding downstream 160416 38536843 ~ 38537047 (+)
G116845 NA non-coding downstream 193977 38570404 ~ 38570657 (+)
G116852 NA non-coding downstream 250367 38626794 ~ 38628164 (+)
G116869 NA non-coding downstream 576800 38953227 ~ 38954811 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other upstream 745536 37524851 ~ 37612322 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other upstream 1236531 37100014 ~ 37121327 (+)
LOC103044253 LOC108440873 other upstream 1643974 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 1998081 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 2369798 35982119 ~ 35988060 (+)
LOC103036266 LOC108441345 other downstream 13850 38390277 ~ 38394530 (+)
G116997 NA other downstream 982444 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 2423044 40799471 ~ 40808545 (+)
fam183a NA other downstream 2782760 41159187 ~ 41166159 (+)
pomgnt1 pomgnt1,LOC102776429 other downstream 2977074 41353501 ~ 41367729 (+)

Expression


Co-expression Network