LOC103039807 (cyfip1,LOC107673532,LOC107716963,LOC107685293)


Basic Information

Item Value
gene id LOC103039807
gene name cyfip1,LOC107673532,LOC107716963,LOC107685293
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 38164962 ~ 38232552 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249104.3
ATTATGAACATGATGTATAATGTCTATAGAgttaagtgtgtgtggggggtgatCTCCGCAGGGCGCCCTCTGCCGGCGGGGCTGAGCGTATCTCTGTGGTCTTTCCTGTTGAGTTTTCCTGTAGTGGAGGAGGAACGGGAACTCCCACAGTGAGCTTCTGGCTACAGGCAGGATTTCAGCGCACTGGAAAGTTTCATTGTAGATACAACAGCAGCGCTTCAGCCTGAACTGCGGCTCGTTCGAGCGGAGAGTTCTTCAGCAGATGGAGGTTTAAGCGAGCGTGGCGGATCGAGAGTTTATCCCTGGAGAATAGACAGCAGGacTCATGGCTGCCACCGTGACTCTGGAGGATGCTCTGTCCAATGTGGACCTGCTGGAAGAGCTTCCGCTTCCAGACCAGCAGCCCTGCATCGAGCCCCTGCCCTCATCAATCATATACCAGCCGAACTTCAACACCAACTTTGAAGATCGCAATGCTTTTGTGACGGGCATCGCCCGCTACATTGAGCAAGCCACCGTCCACTCCAGCATGAATGTAATGCTGGAGGAGGGGCAGGAGTATGCTGTGATGCTCTACACGTGGAGAAGTTGTTCCAGGGCCATCCCCCAGGTGAAGTGCAATGAACAGCCCAACAGAGTGGAGATCTATGAGAAGACTGTGGAGGTGCTGGAGCCTGAGGTCACCAAGCTAATGAACTTCATGTACTTCCAGCGTACTGCGATCGATCGTTTCTGTGGTGAGGTGCGGCGTCTGTGTCACGCCGAGCGCAGGAAGGACTTTGTGTCCGAGGCCTATCTGCTCACTCTGGGAAAATTCATCAACATGTTTGCTGTGCTGGATGAACTCAAGAACATGAAGTGCAGCGTTAAGAACGACCACTCAGCATATAAGCGTGCAGCCCAGTTCCTGAGGAAAATGTCTGAGCCGTCCTCCATCCAGGAGTCTCAGAACCTGTCCATGTTCCTGGCCAATCATAACAAGATCACTCAGTccctgcagcagcagctagaGGTCATTAACGGCTATGACGAACTGCTGGCTGACATTGTCAACCTGTGTGTGGACTACTATGAGAACAAGATGTACCTGACCCCCAGTGAGAAACACATGCTGCTCAAAGTGATGGGCTTTGGTTTGTATCTAATGGATGGAACTAACAGCAACATCTACAAGCTGGATGCCAAGAAAAGAATCAACCTCACCAAGATTGACAAGTTTttcaagCAACTGCAGGTGGTGCCGCTCTTTGGAGACATGCAGATTGAGTTATCCCGTTACATCAAAACCAGTGCTCATTTTGAGGAAAACAAGTCCAGATGGTCATGCACATCTGCCGGCAGTAGTCCTCAGTATAATATCTGTGAGCAGATGATTCAGATTCGAGATGATCACATGCGCTTCATCTCTGAGTTGGCTCGCTATAGCAACAGTGAGGTGGTGACAGGCTCTGGCCGTCAGGATGCACAAAAGACTGATTCCGAGTACAGAAAGCTGAGCGAATTGGCCTTGCAGGGCCTGCAGCTGCTTTCTCAGTGGAGCGCCCAGGTCATGGAAGTGTACTCATGGAAATTGGTGCACCCGACAGACAAATACTCCAACAAGGAATGTCCTGACAACGCTGAGGAGTATGAACGTGCCACTAGATACAACTACACCAGTGAGGAGAAGTTTGCGCTGGTTGAGGTGATGGCCATGATAAAGGGGCTGCAGGTCCTGATGGGTCGAATGGAGAGTGTGTTTAATCACGCCATTCGCCACACCATCTACTCCGCCCTACAGGACTTTGCCCAGCTCACACTCCGGGACCCTCTGCGCCAGGCcatcaagaagaagaagaatgtcGTTCAGAGCGTCCTCCAAGCCATCCGAAAGACTATCTGTGACTGGGAGACAGGAAGAGAACCACATAATGATCCAGCCCTGCGAGGGGAGAAGGACCCCAAAGGAGGCTTCGACATCAAAGTGCCTCGTCGTGCTGTCGGACCCTCTAGTACTCAGCTGTACATGGTGAGGACCATGCTGGAGTCCCTGGTGGCTGATAAGAGTGGCTCAAAGAAGACGCTGCGCAGTAGCCTGGAGGGCCCCACCATCCTGGACATCGAGAAGTTCCATCGTGAATCCTTCTTTTACACTCACTTGCTGAATTTTAGTGagacactgcagcagtgctgcgaCTTGTCCCAGCTGTGGTTCAGGGAGTTCTTCCTGGAGCTCACCATGGGCCGTCGCATCCAGTTCCCCATTGAGATGTCCATGCCCTGGATCCTCACTGACCACATTCTGGAGACTAAAGAGGCCTCCATGATGGAGTATGTTTTATATCCCCTGGACTTGTATAATGACAGTGCACACTATGCTCTCACCAAGTTCAAGAAGCAGTTCCTCTATGATGAGATTGAGGCTGAGGTGAACCTGTGCTTTGATCAGTTCGTCTACAAACTTGCAGACCAAATCTTTGCCTACTACAAGGTTCTCGCTGGAAGtctgcttttggataagagACTTCGTGCAGAGTGTAAGAACCAGGGAGCTAACATTTCATGGCCTCCCTCCAACCGCTATGAGACACTGCTGAAGCAAAGACATGTTCAGCTGTTGGGCCGTTCCATTGACCTGAACCGCCTCATTACACAGAGAGTGTCTGCTGCCCTTTACAAGTCTCTCGAGTTGGCCATTAACCGCTTTGAGAGCGAGGATCTCACCTCCATCGtggAGCTTGAAGGCTTGTTGGACATCAATCGAATGACCCACAAGCTCCTCAGTAAGTTTCTGACTCTAGACAGCATGGATGCCATGTTCCGCGAAGCCAACCACAACGTATCTGCTCCATACGGCAGGATCACACTGCACGTCTTCTGGGAACTCAACTATGACTTCCTGCCCAACTACTGCTACAATGGCTCTACCAACAGGTTCGTTCGCACTGTGCTGCCGTTCTCACAGGAGTTTCAGCGAGACAAGCCACCCAATGCCCAGCCGCAGTACCTCTACGGCTCAAAgGCCTTGAACTTGGCGTACAGCAGTATATATGGCTTCTACCGGAACTTTGTGGGACCACCTCACATCAAGGCTATGTGCAGACTGCTGGGGTACCAGGGGATTGCTGTGGTCATGGAGGAGCTGCTAAAGGTCGTCAAGAGCCTGCTCCAGGGCACCATCCTGCAGTATGTGAAGACGCTGATGGAAGTGATGCCCAAGATCTGCCGTCTCCCGCGCCACGAGTACGGCTCACCAGGCATCCTGGAGTTCTTCCACCACCAGCTTAAGGACATAGTAGAGTATGCTGAGCTGAAGACTGTGTGCTTCCAGAACCTGAGGGAGGTTGGCAATGCTGTGCTCTTCTGCCTGCTGAGTGAACAGAGTCTGTCTCAGGAGGAAGTGTGTGACCTTCTGCATGCTGCACCATTCCAGAACATTCTGCCCAGAGTTCACGTCAAAGAGGGCGAGCGCTTGGATGCTAAGATGAAGCGGCTTGAAGCCAAGTACACTGCGCTGCATCTGGTGCCTTTAATTGAGCGCCTGGGAACACCACAGCAAATTGCCATTGCCCGTGAGGGAGACCTGCTGACCAAAGAAAGACTATGCTGTGGGCTCTCCATGTTTGAAGTCATCCTGACCCGCATCCGAGGCTTCCTGGACGACCCGATCTGGCGCGGCCCGTTACCCAGCAATGGTGTGATGCATGTTGATGAGTGTGTGGAGTTCCACCGCCTGTGGAGCGCCATGCAGTTTGTGTACTGCATTCCTGTTGGAGCTCATGAGTTTACTGTGGAGCAGTGTTTTGGAGATGGGCTGAACTGGGCAGGCTGTATGATCATCACGCTGCTGGGTCAGCAGAGACGCTTTGACATCATGGACTTCAGCTATCACCTGCTCAAAGTGCAGAAACATGACGGCAAGGACGAGATTATCAAGAGTGTGCCCTTAAAGAAGATGGTTGACCGCATTCGCAAGTACCAGGTTCTGAACGATGAGATCTTTGCCATCCTGAACAAGTACCTGAAATCCGGCGATGGAGAGAACATGCCAGTGGAACACGTTCGATGCTTCCAGCCACCAATCCACCAATCGCTGGCTAGCAACTGAGATCACTTTATGCCTTACGCCAAACCCTGTTTACACTCGTCAGTGTTTGGATTGATTGAAGGTTAGATGTACTGTTAACAAAAGCACCAGCAAAATTCTAGTCTATATTTGATGGTGGAAAATATGTTGACCAATTTTTAAGCCAATAGGACCATATTCACCATTACCATGACCATGTTCTGTCTGTGGGAAACTACTTTACCTATGCCTATAGTGTTTTGTAGAGCCAGTAAAGCAGGTAATGATTTGTCAAGCAACATGCTTCTGCAGCAATCTCTGGTTGCAGAATCAGTTTGTGCAAGATGTGGGCTTTGGTAAGACGAGCTCAGAGACGGTAGTTGATTGATGTGGCCCAGTTTTAAACAACTACAGTTTAACAATGGTCAAAcaagttatttttttgtatacaaaACATGtgccttattattattaatgacttgCCTTACTTTTTTTCCTTGTCATCCAGTACAATCCTATTCATTTCCAATATCGTATTTgttttatactctttaaaaaGTTATAGCTAAGGGTGGGAAAATGGCCAAGTTGGTTTTATCATGAGATTATTTAAaggttgcttttttttgttgctgtggTGAGagatctagttttttttttttttttggaatgactgcatgcttttttttccccctccccAAGAAAGTTTAACCAAGTTCTTACTCTTGTTAAAACACTTGCGTTTTTGTATTTGAATGAttgtaatcacattttaattcaaataaatatgtaacaaaTCTCA

Function

symbol description
cyfip1 Predicted to enable RNA 7-methylguanosine cap binding activity and actin filament binding activity. Acts upstream of or within with a positive effect on axon extension. Predicted to be located in cytoplasm. Predicted to be part of SCAR complex. Predicted to be active in neuron projection and synapse. Human ortholog(s) of this gene implicated in autism spectrum disorder and schizophrenia. Orthologous to human CYFIP1 (cytoplasmic FMR1 interacting protein 1).

NR:

description
PREDICTED: cytoplasmic FMR1-interacting protein 1

GO:

id name namespace
GO:0031529 ruffle organization biological_process
GO:0030032 lamellipodium assembly biological_process
GO:0048675 axon extension biological_process
GO:0008360 regulation of cell shape biological_process
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function

KEGG:

id description
K05749 CYFIP; cytoplasmic FMR1 interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249104.3 True 4847 mRNA 0.49 31 38164962 38232552

Neighbor

gene id symbol gene type direction distance location
herc2 herc2 coding downstream 18339 38058927 ~ 38146623 (-)
oca2 oca2,LOC107716962 coding downstream 116074 37904635 ~ 38048888 (-)
gabrb3 gabrb3,LOC107673538,LOC107711086,LOC107585149,LOC107685288,LOC107582723,LOC107733605 coding downstream 568790 37442908 ~ 37596172 (-)
atp10a atp10a,LOC107733604,LOC107711085,LOC107673579,LOC107685287 coding downstream 810570 37274323 ~ 37354392 (-)
ube3a ube3a,LOC107711083,LOC107582722 coding downstream 920723 37235624 ~ 37244239 (-)
slc9a7 slc9a7,LOC107673530,LOC107711095,LOC107753405,LOC107685298 coding upstream 30569 38263121 ~ 38340842 (-)
gtpbp6 gtpbp6,LOC104953295 coding upstream 163314 38395866 ~ 38402553 (-)
LOC103034364 NA coding upstream 174746 38407298 ~ 38411708 (-)
ptger3 ptger3,LOC107585167,LOC107711104,LOC107673459,LOC107682156,LOC107734856 coding upstream 258233 38490785 ~ 38501152 (-)
zranb2 zranb2,LOC107685308,LOC107726518 coding upstream 271574 38504126 ~ 38511378 (-)
G116754 NA non-coding downstream 204351 37953796 ~ 37960611 (-)
G116653 NA non-coding downstream 405802 37640493 ~ 37759160 (-)
G116646 gabra5,LOC107673539,LOC107711088 non-coding downstream 552675 37600824 ~ 37612287 (-)
LOC111193781 NA non-coding downstream 664766 37498363 ~ 37500196 (-)
G116636 NA non-coding downstream 728776 37435883 ~ 37436186 (-)
G116794 NA non-coding upstream 122439 38354991 ~ 38357368 (-)
G116908 NA non-coding upstream 200787 38433339 ~ 38434506 (-)
G116910 NA non-coding upstream 253498 38486050 ~ 38487112 (-)
G116906 NA non-coding upstream 254674 38487226 ~ 38487631 (-)
G116926 NA non-coding upstream 360516 38593068 ~ 38593493 (-)
G116581 eif4b,LOC108441049 other downstream 1119174 37041361 ~ 37045788 (-)
LOC103023810 NA other downstream 1133599 37022175 ~ 37031363 (-)
LOC103028059 ghrl other downstream 2102678 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 2206144 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 2284671 35869803 ~ 35880291 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 922 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 148718 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 398085 38630637 ~ 38899446 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other upstream 720610 38953162 ~ 38963694 (-)
LOC103028549 NA other upstream 1051665 39284217 ~ 39291028 (-)

Expression


Co-expression Network