LOC103046153 (eif4b,LOC108441049)



Basic Information


Item Value
gene id LOC103046153
gene name eif4b,LOC108441049
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37041366 ~ 37050408 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007249126.3
GATGCGCGCGCTCCAGCCCCCCCATGCCACGCGCCATAGTGACGCTTTCATCCGGGTCTCGGCGACGTACACAGTTTCCAACATGGCGGCATCAGctaagaagaagaataagaagggCAAGACTCTAACTCTTACTGACTTCCTTGCGGAAGACAGTAAAGGTTCGACACCACAATATTACCCGCCAACAAAGCCAACCAGTTGGGCAGATGAGACCGATGACTTTGAAGGGGAAGTGTCTACCTCCTGGCACACAGAGGAAGACTCATATCGTGCTCCGCCCATTGATCGTTCACTCTTGCCAACTGCTCCTCGTGCAGCCAGGGAGCCAAACGTTGACCGTTCACGTCTGCCCCGCAGCCCACCCTACACTGCCTTCCTTGGTAACCTCCCCTATGACGTCAGTGAAGAGTCCATCAAGGATTTCTTTAGAGGCCTGGCGATCAGTGCAGTGCGTTTGCCAAGAGAGCCCAATAACCCGGAGAGGCTGAAGGGATTTGGCTATGCTGAGTTTGATGACGTTGAGTCCCTTCTTCAGGCTCTCACTCTGAATGAGGAGAACCTTGGGAACAGACGGATTCGAGTAGATATTGCGGATCAGTCCAATGACAAAGAGAGGGATAGTGGTATGATGTCAGGACGAGATCGGGGCCGTGGAATGGACCTTGGTCCTGATAAGACAGATTCTGATTGGAGAGCTAGACCCAGTGCAGACCAGGATGATGGGCCTCGTAGAGATGACGACTATGGAGAAAAGTCACGTGATCGTTATGAGTCAGATCGGAACAGAGATGGCCCATGGCGTGATGATCGCTATGGCGGCAGAGATCGGTATGATGACCGGGATCGCAGGGACCGGTTTGGCGACCGGGACCGCTATGGCGACAGGGATCGCAGGGATCGTTATGATGACCGAGGCAGCAGAGACTACGAACGTGGAGgattTGACTCTCGTGGTGGAGGCCAGCGAGCATTTGGTAGTGGCTTTAGGCGTGACTACGACGACAAGCGAGATGAAGACCGGTACGAGAGACGGGATGACAGGCGTGAGGAGAGAGCCCCGCTACAAAGACCCAAACTGAACTTGAAACCTCGCACCATCCCAAAAGATGAGGAGCAAAGTGGGGGCACCTCCCCCCAAACCAGTACCACCAGTGCTGGTGGCCGGTCTGCCTCCATTTTTGGAGCCGCCAAACCTGTAGACACTGCTGCCAAGGAGCGAGAAGTGGAGGAGAGGCTGAAGAAGGAACAGGATCGACTGCAGAGACAGCTAGATGATGACAAAGGCAGACCTTCAGAGAGAAGGCCACGAGATCGGGACCCCAGCTGGCGCAGTGAGATGTCTGCGAGTGAGCATGAGCGCACAGGAAACAATTCCACACATCCTGGAGGTCCTAAAAGCCACCAGAGTGATCATTCAGAGAATGAAGTATTTAGTGGCCAGGAGGATGAACCTGCCTCCTCAGAGTTACGCACACCAACCTCACCAAGTCGGGGAGCTCTCCCACTTAAAACTATGCCAGCTCCTCCCCCTAAGGAGAATGCATGGGCTAAACGAAGCACAGGTGGAAGCCCAAATGCCCCATCTACAGCTGCTTACAAGCAGAGCAGCCAGTCAGATTTGGGAGATGAAGAAGAGAATCAGTTGGATGGGGCAGATAGGGAGAAAGGCATGTCTCAAGGGAGAGGAGGACAAGGTCGAGATGGAGAAGGTCCCAACAAAGATAGGAAAGAGATCAAACGAGAGAGGGAGCCCAAACCCATACCAGAGCCAAAGAAATATGAGGAGACTGCACCCCCGAAATTCAGTTCAGCCAGTAAGTATGCTGCCCTGTTGATGGATGGTGACCAAGGAGAGGATGAAGATGGTGAGAATTAAGTGGGATTGAAGAAAAGTAGAATGAAATGGAAGCAAGTGAAAAAGAGATTGGAGCAAAATTAAAGATCAAATACTGAATGATCAGGAAAGACAAGTTCCTGCAGTGACTGTGGGGACCACGGCAAAGCTTGCCAGAGTTCTGATCATAATGTTTATCAAGTTTCTCAAACTATACACTCATTTGACTAGTTTTAATTAGGAAAAGCAGTACAAAACTCAGACACTAGATACTCACTTGCATTTAGGAATTTGAAAATCGTTAATTTGCAAGGCATTGTTCTAAATAAATTTGAAAGTATGTAAAATACtgcagttttttgttttctcttgtttGGTGCTATTTACATGACTGGGCACCATGTACAAAGCCTGTCCTGGTTCAGCTGAGAAGGTTAACTGCATGGGCAAATGTAATGAATCCATCCTGTCTGTTTGCTGAAAAGGATTCAGTGTTGGTGGAAAGAGTACATGTTGGAAGTGTAGTCTAGTGTTGGTAAAGACCAGCTGCCTGACTGCCGTTGGTCTCAACTGTCCCATATCGGATGTACACAATTCCAGAGTGCAACAGTGGCTTTTAGATGgttcttttttttggttaaatgaTCTTAACGCAAGGGAGGGCTGACACAGATATTTGTTGCTGGATTATAAATATAACCTTGCCTAAATATCTCCTGGTATTTAACCAAGAAGGAAATTCTATGTCACAGTTTCAAGGTTGTACAGGATGTTTGCTACAGTCATCAATTAGCATCCAGTTAATTTGCAACTGCAGGGCATGCACTTCCCGCTGTGCACATCTGCATTCTGTCACAGATAAGAGGGGCTGTCTGGTGATGCCCCAATGTTTTTAGGCATGTTAGTAGTAACAGTGGCACAATAAAGCTTTTGTGGACGTCATCATAGCCTAGTTCGCCCCTTTGATGACTGTGCACTGCTAGtgctatatttaaaaacaaaaaggacaattttatttaacatatcaCACTGCACTCTGCACTGAATCTGAATCCACTTTTATTGTGACATCGAAAACATGTTCTTtaattactagtgatgcccactGTATGCTCAGAAACTTGTATTATGACTTAATGTATcacagtaataaaatacattacccACTTGTG
>XM_007249128.3
ATGCGCGCGCTCCAGCCCCCCCATGCCACGCGCCATAGTGACGCTTTCATCCGGGTCTCGGCGACGTACACAGTTTCCAACATGGCGGCATCAGctaagaagaagaataagaagggCAAGACTCTAACTCTTACTGACTTCCTTGCGGAAGACAGTAAAGGTTCGACACCACAATATTACCCGCCAACAAAGCCAACCAGTTGGGCAGATGAGACCGATGACTTTGAAGGGGAAGTGTCTACCTCCTGGCACACAGAGGAAGACTCATATCGTGCTCCGCCCATTGATCGTTCACTCTTGCCAACTGCTCCTCGTGCAGCCAGGGAGCCAAACGTTGACCGTTCACGTCTGCCCCGCAGCCCACCCTACACTGCCTTCCTTGGTAACCTCCCCTATGACGTCAGTGAAGAGTCCATCAAGGATTTCTTTAGAGGCCTGGCGATCAGTGCAGTGCGTTTGCCAAGAGAGCCCAATAACCCGGAGAGGCTGAAGGGATTTGGCTATGCTGAGTTTGATGACGTTGAGTCCCTTCTTCAGGCTCTCACTCTGAATGAGGAGAACCTTGGGAACAGACGGATTCGAGTAGATATTGCGGATCAGTCCAATGACAAAGAGAGGGATAGTGGTATGATGTCAGGACGAGATCGGGGCCGTGGAATGGACCTTGGTCCTGATAAGACAGATTCTGATTGGAGAGCTAGACCCAGTGCAGACCAGGATGATGGGCCTCGTAGAGATGACGACTATGGAGAAAAGTCACGTGATCGTTATGAGTCAGATCGGAACAGAGATGGCCCATGGCGTGATGATCGCTATGGCGGCAGAGATCGGTATGATGACCGGGATCGCAGGGACCGGTTTGGCGACCGGGACCGCTATGGCGACAGGGATCGCAGGGATCGTTATGATGACCGAGGCAGCAGAGACTACGAACGTGGAGgattTGACTCTCGTGGTGGAGGCCAGCGAGCATTTGGTAGTGGCTTTAGGCGTGACTACGACGACAAGCGAGATGAAGACCGGTACGAGAGACGGGATGACAGGCGTGAGGAGAGAGCCCCGCTACAAAGACCCAAACTGAACTTGAAACCTCGCACCATCCCAAAAGATGAGGAGCAAAGTGGGGGCACCTCCCCCCAAACCAGTACCACCAGTGCTGGTGGCCGGTCTGCCTCCATTTTTGGAGCCGCCAAACCTGTAGACACTGCTGCCAAGGAGCGAGAAGTGGAGGAGAGGCTGAAGAAGGAACAGGATCGACTGCAGAGACAGCTAGATGATGACAAAGGCAGACCTTCAGAGAGAAGGCCACGAGATCGGGACCCCAGCTGGCGCAGTGAGATGTCTGCGAGTGAGCATGAGCGCACAGGAAACAATTCCACACATCCTGGAGGTCCTAAAAGCCACCAGAGTGATCATTCAGAGAATGAAGTATTTAGTGGCCAGGAGGATGAACCTGCCTCCTCAGAGTTACGCACACCAACCTCACCAAGTCGGGGAGCTCTCCCACTTAAAACTATGCCAGCTCCTCCCCCTAAGGAGAATGCATGGGCTAAACGAAGCACAGGTGGAAGCCCAAATGCCCCATCTACAGCTGCTTACAAGCAGAGCAGCCAGTCAGATTTGGGAGATGAAGAAGAGAATCAGTTGGATGGGGCAGATAGGGAGAAAGGCATGTCTCAAGGGAGAGGAGGACAAGGTCGAGATGGAGAAGGTCCCAACAAAGATAGAAATTCAGTTCAGCCAGTAAGTATGCTGCCCTGTTGATGGATGGTGACCAAGGAGAGGATGAAGATGGTGAGAATTAAGTGGGATTGAAGAAAAGTAGAATGAAATGGAAGCAAGTGAAAAAGAGATTGGAGCAAAATTAAAGATCAAATACTGAATGATCAGGAAAGACAAGTTCCTGCAGTGACTGTGGGGACCACGGCAAAGCTTGCCAGAGTTCTGATCATAATGTTTATCAAGTTTCTCAAACTATACACTCATTTGACTAGTTTTAATTAGGAAAAGCAGTACAAAACTCAGACACTAGATACTCACTTGCATTTAGGAATTTGAAAATCGTTAATTTGCAAGGCATTGTTCTAAATAAATTTGAAAGTATGTAAAATACtgcagttttttgttttctcttgtttGGTGCTATTTACATGACTGGGCACCATGTACAAAGCCTGTCCTGGTTCAGCTGAGAAGGTTAACTGCATGGGCAAATGTAATGAATCCATCCTGTCTGTTTGCTGAAAAGGATTCAGTGTTGGTGGAAAGAGTACATGTTGGAAGTGTAGTCTAGTGTTGGTAAAGACCAGCTGCCTGACTGCCGTTGGTCTCAACTGTCCCATATCGGATGTACACAATTCCAGAGTGCAACAGTGGCTTTTAGATGgttcttttttttggttaaatgaTCTTAACGCAAGGGAGGGCTGACACAGATATTTGTTGCTGGATTATAAATATAACCTTGCCTAAATATCTCCTGGTATTTAACCAAGAAGGAAATTCTATGTCACAGTTTCAAGGTTGTACAGGATGTTTGCTACAGTCATCAATTAGCATCCAGTTAATTTGCAACTGCAGGGCATGCACTTCCCGCTGTGCACATCTGCATTCTGTCACAGATAAGAGGGGCTGTCTGGTGATGCCCCAATGTTTTTAGGCATGTTAGTAGTAACAGTGGCACAATAAAGCTTTTGTGGACGTCATCATAGCCTAGTTCGCCCCTTTGATGACTGTGCACTGCTAGtgctatatttaaaaacaaaaaggacaattttatttaacatatcaCACTGCACTCTGCACTGAATCTGAATCCACTTTTATTGTGACATCGAAAACATGTTCTTtaattactagtgatgcccactGTATGCTCAGAAACTTGTATTATGACTTAATGTATcacagtaataaaatacattacccACTTGTG

Function


symbol description
eif4b Enables RNA binding activity. Predicted to be involved in eukaryotic translation initiation factor 4F complex assembly and formation of translation preinitiation complex. Located in cytosol. Biomarker of autism spectrum disorder and major depressive disorder.

NR:

description
PREDICTED: eukaryotic translation initiation factor 4B-like

GO: NA

KEGG:

id description
K03258 EIF4B; translation initiation factor 4B

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007249126.3 True 3009 mRNA 0.48 15 37041366 37050408
XM_007249128.3 False 2935 mRNA 0.48 14 37041367 37050408

Neighbor


gene id symbol gene type direction distance location
LOC103021407 LOC108441035,LOC108272207 coding upstream 31176 36993982 ~ 37010190 (+)
apof NA coding upstream 51317 36985932 ~ 36990049 (+)
LOC103039123 LOC108441012,LOC105017220,LOC105897894 coding upstream 69668 36962226 ~ 36971698 (+)
os9 os9,LOC107711069,LOC107582707,LOC107673576,LOC107733587,LOC107585136 coding upstream 79799 36947965 ~ 36961567 (+)
LOC103040047 NA coding upstream 121823 36904618 ~ 36919543 (+)
LOC103046872 NA coding downstream 7033 37057441 ~ 37088492 (+)
LOC103044613 NA coding downstream 81166 37131574 ~ 37159320 (+)
LOC103043103 cnga3a,LOC108441138,LOC107585144,LOC107711084,LOC107733584,LOC108271559,LOC106560639 coding downstream 170912 37221320 ~ 37233209 (+)
gabrg3 gabrg3 coding downstream 569628 37620036 ~ 37829531 (+)
nipa1 nipa1 coding downstream 1097534 38147942 ~ 38154159 (+)
G116466 NA non-coding upstream 27181 37011453 ~ 37014185 (+)
G116378 NA non-coding upstream 131717 36909203 ~ 36909649 (+)
G116360 NA non-coding upstream 198128 36840841 ~ 36843238 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding upstream 206844 36833489 ~ 36834522 (+)
G116359 NA non-coding upstream 209790 36823464 ~ 36831576 (+)
G116511 NA non-coding downstream 47846 37098254 ~ 37098533 (+)
G116507 NA non-coding downstream 71282 37121690 ~ 37124435 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding downstream 140662 37191070 ~ 37199094 (+)
G116539 NA non-coding downstream 201799 37252207 ~ 37252770 (+)
G116536 NA non-coding downstream 214868 37265276 ~ 37273002 (+)
LOC103044253 LOC108440873 other upstream 327482 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 681589 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 1053306 35982119 ~ 35988060 (+)
tomm6 NA other upstream 1073488 35958543 ~ 35967878 (+)
G115931 NA other upstream 1307007 35730379 ~ 35734359 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 49606 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 474443 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1339869 38390277 ~ 38394530 (+)
G116997 NA other downstream 2308463 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3749063 40799471 ~ 40808545 (+)

Expression



Co-expression Network