LOC103046872


Basic Information

Item Value
gene id LOC103046872
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 37057441 ~ 37088492 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249129.3
CATGCCCCTCAGAGTATGTGTGGGAGAAGGAGAGCAACAGGCAGAGGGAGAACACCTAGAGCGAGagcaggacagagagagagagagagagagaatgtgtgtgagtaACAGCAGCAAAAGACAGTTCTTTCCCCACACTGGGGCCAGTGGCCAGTgaaggaaggagggagagagaagggcAGGGTCCTCAGCGGGGTGGAAAGGATAGCAACTCAACACCAAAAAGTGGGAGAACAGTGGataagaggaagaaagagaagtgaagagaagagaagtgaATAGAAGTTGCTGGGATGGGCTGTGTGTTCAGTAAGCAACGGAGGGTGAAAGAGAACACCCCCAGAACACGAGAGTGCACCGAGGATACAGAGATACTCAGCCTAACagagTTGGGGGAGGTTGAATCACACTCTTTCAAAgggaaaaagaaacagaagaagcAGCAGTGTGCTCTGTGTACACAGACCCTAGACAGTGATGGAGTCTACTGTAAAGAATGTAAAACTGCAGCTCGTAATAACCATGAACCAAAGGTCTCTGGGTCCTGCGCTACAGCTGCAGATCCTGTACAAAAATCAAACTCTCTCAGAGGTGACCGTGAGGCGGCAGTGATGCACAGAGTGATGGACAGAGTCATGGAGAGCCGGTATGACTTTGACCTGATCTACATCACTGAGAGAATCATCTCTGTTTTCTTCCTGCCCCATCTGGATGAGCACCGCTACAGCAGCAACCTGAAAGAAGTGGCAGCCATGCTAAAATCTAAACATCAGGATAAGTTTATGGTCATCAATCTGTCTGAGAAACGTCACGACATCTGCAGATTAAACCCCAAGgtAGAAGAGTATGGTTGGCCAGACCTGCACGCTCCTCCCCTGGATAAAATATGCGCTGTATGTAAAGCCATGGAGGCCTGGCTGAACTCTGACCCAAGCAATGTTGTTGTGCTGCACTGTAAGGGGAACAAAGGAAAAACGGGAGTGATAACAGCAGCTTACATGCACTACAGCAAGATCTCAGCTGGGGCAGAGCAAGCACTAGCCACTGTTGCCATGAGAAAATTCTGTGAGGACAAAATCTCCCCTTCTCTACAGCCATCACAAAGCAGGTATATTTACTACTTTGCTGGGCTTCTGTCAGGCACAATCAAGATAAACAGCTCTCCTCTGCTCCTgcagcaagttcatattccatCACTACCTAACTATCAGCCAGGTGGAGGTTATGCTCCTTTCCTGAAGATCTACCAGTCTCTGAAGTTGGTGTATACCTCGGCTACATACAATATTGAAGATTCCAGGAGCAAAACCCTGCATATCAGTATTGAACCAGCTCTGCTGCTGAAGGGGGACATTATGGTAAAGTGCTATCATCGACGTGCAGGATTGTGTGAGAGGGAATGTATATTTCGAGTACAATTTCATACCTGTACAGTTCATGGGGCTCAGCTGTGGTTTGGAAAAAGGGAACTGGACCAAGCATGCACAGATGAGCGGTACCCAGCTGATGCCACAGTAGAATTGGTGTTTTCTACTAGTCCACAGCCAGCAAAAGGAGGGGATTCTCTGCAGAGTGAGCCTGGGGGCAGTGTGGATTTTAGCTGTACAGATCCTGTAGTGCGTTGGGACTCGTATGAAAACTTTAATCTTCATCATCAGGACAGCACAGAGGATATCTGTCACACACGTGGGCCACTGGATGGCAGCCTGTATGCTCAGGTGAAAAAGCGCCGTGTTCCCGGCTCTGGTTCCAACTGCTGCAAACCAGGTATCAACCCTTCCTCTCCCACCACCAGCAAGCCCTTCCAACCCGTCTCTCCCAGCTCAGACTCTGGACACTCTTCCACTCCTTCTGAGCTTCTGGAGGAGCCTCCTCTACTTCCACCCCACAGAGAGGACATAGAGAGAGTTCaggggagaaagagtgagaaagagagggacagagagacgGCTATACTGGATGATGGTGAATGTTCTTCTCTCCGACTGGTCAACTCCTGCTGTGGCCGTCCATACTCCCATCCTCAAGCCTACTGTGTCCCTGACTTGCCCAGGGCACACCCTCAAGCAGTCCGTCCCAAACACCACACTCTCCCCTGCAGTCTCACTTCTTCCCCCTTGAATGTCCATGATGTGTGTGTATCCCAGCAAGACCTCCTGTGGAATAGAGGGCGCTGTCCACACCACGCCTGCCCTCAACAAGCCCGGCCCCTTTACGCATACCCATCACAAGATGCACACGCCCACTCGCCACTTATGCACACTACTCGCTCTTCCCATGCTCACACGCTTCCTGCACAGACTCGATTGTTTTATTCTGGGGAAGTATGCCCTCtcttccattgctccaccaacTCCCATGGCCACACTCACATTCCACCTCCTCTCCCTTCCCACCAGTCACTTCCCCCAAGTCCGTACCGTGAGTTACGATTCAGCTCGACTGGACAACCTTCCCACTGTTCTTGCAGGGACTGTGCCCACCTGCCAGACGACATCACCCTCCACTCTCTCAGAGTAAGCCAATTAGAGAGTCTCCCTTGGTCTCGAGAGGCAGGGTTTGGGTGCAGGAGGGAGGGACCTGTGCATTGGGCTAGAGATGGAGCCATTGAGTCACACTGGCGGCACAGAACAGCAATGTCACCTACAATGCCATCCTATGGACATGGACCCTGCCATTCTCTCTCTATACAAGACCCTCCTGTCTATTTAGTGGACCAACGACCAGACAGTCCCTCCAATCCATATCCAAGCCCACACAGTAGTGGTTACCACAGCCCCCATCCTCCCTGTCCCTGTTCCCCTCCCCAGGTTCGAGACAGTCCAGGCTATGCTTCAATGGGTCATTCTCCAAGTTCTTCTCCTCTGGCTCTTACCCCATCTCCAAAAAGAGCCAGTCTTCCCCAGCGTCCATATATACAGAGCCCACTGTCAACTGGAGTGGAAAACAGTCTTCATTGCAACCACACAGAAACAAAAAGTCCCCAGAGTGACTTAGAGGATGTTAATGCAGAAGATCTTTCTAGGAAATCCAGAGAAAGTGCAGGAGCACCACTGGAGCAAGATGATTCAGATCAAAGAGGCCTGACGCAAGCAGAGCCTTTTCCTAGGGATGCTTCTACACAATGCAGTGTCCCCCTTGAGGCTGAACACATCGACGAGTCACACACCACTGAGATTAAGGATCCACCTGTTACAGAGTCCATATCCTCCGCAACTGTCTCAAGTGAACATCACGCAAACTCTGACTCGTCACCCACATCTCAGAGGCCAGATTCGCCCGTACTTGTTTTGCAAATACAAGAGACCACCTCAGTACCGTTTGTAAGCACCAGTCACCAAGAGATGGAATTGAACAAGAATGTGTGTCTACGACCAATCCTCAAATCCTCTTCAACGTCTCCCCAGGCTTCTACCTGTGCTTCAGAGAGAAGCTCCACCTCTGAGCTTCCTTTACTTGCCATCAGTGCTGAGGGTCATAGACTGACCCCTCTGACCGATGGAGCCTCCTCCAATGAGGAAGGAAGCAGCAATGATTTGAGAGCTCCTTCTCCAGTTCCTGATGGCTACATCACACCCTCATTCCCATTAGCATCACCCAGCTACCCACTTCTGACTGTTCCTCATGTTCCATACACAGGATACACTGAAGTTACTATTCCAGCCCCCCCTCTTCAACCTCCCTTACCTAACAAACAGCATGCCTCTCCTCTTCAGGAGCCCCAATCTGGCACCTCGTCCAGCAAATCCGCAGCACCTTCCAATTCTTCCCCTGAGGTACAGGTCTCCATCTTAACCACTGCAAATGAACAGATTTCCCCATCTAGACACAAAAGAGTGCCCCCTAAAGGAGTGGAGAATCGAGAGAGCCGTGTTAGCTCCAAGTTTGTGCAGGATAGCTCCAAGTTCTGGTACAAGCCCGGAATCTCCCGAGACCAGGCAATTGCTGTTCTGAAGGACAAGGACCCTGGTTGCTTCTTGATAAGGGACAGCAAATCATTCCAAGGTGCATACGGACTGGCCCTCAAAGTAGCAATACCTCCATCGCATGTAATTAACCATGTCAACAACCATAACTCTCAGGAGCATCTGGTCAGGCACTTCCTGATTGAGAGTGGAGCGAAAGGAGTAAAAATCAAAGGCTGTCACAACGAAACCTACTTTGGCTCACTGTCCGCACTAGTATATCATCACTCCATCGTGCCTGTCTCTCTGCCCTGCACTCTACGCATCCCAGACAAAGatcttGTAGGAGAGCTGCAGGAATTGCAGAGTGGCACCAACACCAGCACAGCTGCAGATCTGCTCAAGCAGGGGGCTGCCTGTAATGTTCTGTACCTGAACTCTGTGGACATTGAGTCTTTGACTGGGCCACAAGCTATCTCCAAAGCAATAAAGTCTACTCTGAACCAGGACCCCTGCCCATCAGCAACCACTGTCCACTTTAAAGTTTCAACACAGGGCATCACTCTCACAGACAATCAGCGCAGGTTATTCTTCAGGAGACATTACCCTATCCATAGTGTTACCTTTAGCAGTGTGGATCCACAGGATCAAAGGTGGACTAATGCTGATAAAACTTCCAACAAGATGTTTGGGTTTGTAGCAAGGCGCAGTGGTAGCAGTCAGGGAAATGCGTGTCATCTGTTTGCGGAGCTTGACCCAGAACAGCCTGCCACTGCTATCGTCAATTTCATCAATAAAGTCATGCTGGGACCACAACAGCTGCGAAAGtaagagaagagatgagaaaagaagagaagaggagaagtgaagagaagctaaaagaagagaagggaaattaga
>XM_007249130.3
aCATGCCCCTCAGAGTATGTGTGGGAGAAGGAGAGCAACAGGCAGAGGGAGAACACCTAGAGCGAGagcaggacagagagagagagagagagagaatgtgtgtgagtaACAGCAGCAAAAGACAGTTCTTTCCCCACACTGGGGCCAGTGGCCAGTgaaggaaggagggagagagaagggcAGGGTCCTCAGCGGGGTGGAAAGGATAGCAACTCAACACCAAAAAGTGGGAGAACAGTGGataagaggaagaaagagaagtgaagagaagagaagtgaATAGAAGTTGCTGGGATGGGCTGTGTGTTCAGTAAGCAACGGAGGGTGAAAGAGAACACCCCCAGAACACGAGAGTGCACCGAGGATACAGAGATACTCAGCCTAACagagTTGGGGGAGGTTGAATCACACTCTTTCAAAgggaaaaagaaacagaagaagcAGCAGTGTGCTCTGTGTACACAGACCCTAGACAGTGATGGAGTCTACTGTAAAGAATGTAAAACTGCAGCTCGTAATAACCATGAACCAAAGGTCTCTGGGTCCTGCGCTACAGCTGCAGATCCTGTACAAAAATCAAACTCTCTCAGAGGTGACCGTGAGGCGGCAGTGATGCACAGAGTGATGGACAGAGTCATGGAGAGCCGGTATGACTTTGACCTGATCTACATCACTGAGAGAATCATCTCTGTTTTCTTCCTGCCCCATCTGGATGAGCACCGCTACAGCAGCAACCTGAAAGAAGTGGCAGCCATGCTAAAATCTAAACATCAGGATAAGTTTATGGTCATCAATCTGTCTGAGAAACGTCACGACATCTGCAGATTAAACCCCAAGgtAGAAGAGTATGGTTGGCCAGACCTGCACGCTCCTCCCCTGGATAAAATATGCGCTGTATGTAAAGCCATGGAGGCCTGGCTGAACTCTGACCCAAGCAATGTTGTTGTGCTGCACTGTAAGGGGAACAAAGGAAAAACGGGAGTGATAACAGCAGCTTACATGCACTACAGCAAGATCTCAGCTGGGGCAGAGCAAGCACTAGCCACTGTTGCCATGAGAAAATTCTGTGAGGACAAAATCTCCCCTTCTCTACAGCCATCACAAAGCAGGTATATTTACTACTTTGCTGGGCTTCTGTCAGGCACAATCAAGATAAACAGCTCTCCTCTGCTCCTgcagcaagttcatattccatCACTACCTAACTATCAGCCAGGTGGAGGTTATGCTCCTTTCCTGAAGATCTACCAGTCTCTGAAGTTGGTGTATACCTCGGCTACATACAATATTGAAGATTCCAGGAGCAAAACCCTGCATATCAGTATTGAACCAGCTCTGCTGCTGAAGGGGGACATTATGGTAAAGTGCTATCATCGACGTGCAGGATTGTGTGAGAGGGAATGTATATTTCGAGTACAATTTCATACCTGTACAGTTCATGGGGCTCAGCTGTGGTTTGGAAAAAGGGAACTGGACCAAGCATGCACAGATGAGCGGTACCCAGCTGATGCCACAGTAGAATTGGTGTTTTCTACTAGTCCACAGCCAGCAAAAGGAGGGGATTCTCTGCAGAGTGAGCCTGGGGGCAGTGTGGATTTTAGCTGTACAGATCCTGTAGTGCGTTGGGACTCGTATGAAAACTTTAATCTTCATCATCAGGACAGCACAGAGGATATCTGTCACACACGTGGGCCACTGGATGGCAGCCTGTATGCTCAGGTGAAAAAGCGCCGTGTTCCCGGCTCTGGTTCCAACTGCTGCAAACCAGGTATCAACCCTTCCTCTCCCACCACCAGCAAGCCCTTCCAACCCGTCTCTCCCAGCTCAGACTCTGGACACTCTTCCACTCCTTCTGAGCTTCTGGAGGAGCCTCCTCTACTTCCACCCCACAGAGAGGACATAGAGAGAGTTCaggggagaaagagtgagaaagagagggacagagagacgGCTATACTGGATGATGGTGAATGTTCTTCTCTCCGACTGGTCAACTCCTGCTGTGGCCGTCCATACTCCCATCCTCAAGCCTACTGTGTCCCTGACTTGCCCAGGGCACACCCTCAAGCAGTCCGTCCCAAACACCACACTCTCCCCTGCAGTCTCACTTCTTCCCCCTTGAATGTCCATGATGTGTGTGTATCCCAGCAAGACCTCCTGTGGAATAGAGGGCGCTGTCCACACCACGCCTGCCCTCAACAAGCCCGGCCCCTTTACGCATACCCATCACAAGATGCACACGCCCACTCGCCACTTATGCACACTACTCGCTCTTCCCATGCTCACACGCTTCCTGCACAGACTCGATTGTTTTATTCTGGGGAAGTATGCCCTCtcttccattgctccaccaacTCCCATGGCCACACTCACATTCCACCTCCTCTCCCTTCCCACCAGTCACTTCCCCCAAGTCCGTACCGTGAGTTACGATTCAGCTCGACTGGACAACCTTCCCACTGTTCTTGCAGGGACTGTGCCCACCTGCCAGACGACATCACCCTCCACTCTCTCAGAGTAAGCCAATTAGAGAGTCTCCCTTGGTCTCGAGAGGCAGGGTTTGGGTGCAGGAGGGAGGGACCTGTGCATTGGGCTAGAGATGGAGCCATTGAGTCACACTGGCGGCACAGAACAGCAATGTCACCTACAATGCCATCCTATGGACATGGACCCTGCCATTCTCTCTCTATACAAGACCCTCCTGTCTATTTAGTGGACCAACGACCAGACAGTCCCTCCAATCCATATCCAAGCCCACACAGTAGTGGTTACCACAGCCCCCATCCTCCCTGTCCCTGTTCCCCTCCCCAGGTTCGAGACAGTCCAGGCTATGCTTCAATGGGTCATTCTCCAAGTTCTTCTCCTCTGGCTCTTACCCCATCTCCAAAAAGAGCCAGTCTTCCCCAGCGTCCATATATACAGAGCCCACTGTCAACTGGAGTGGAAAACAGTCTTCATTGCAACCACACAGAAACAAAAAGTCCCCAGAGTGACTTAGAGGATGTTAATGCAGAAGATCTTTCTAGGAAATCCAGAGAAAGTGCAGGAGCACCACTGGAGCAAGATGATTCAGATCAAAGAGGCCTGACGCAAGCAGAGCCTTTTCCTAGGGATGCTTCTACACAATGCAGTGTCCCCCTTGAGGCTGAACACATCGACGAGTCACACACCACTGAGATTAAGGATCCACCTGTTACAGAGTCCATATCCTCCGCAACTGTCTCAAGTGAACATCACGCAAACTCTGACTCGTCACCCACATCTCAGAGGCCAGATTCGCCCGTACTTGTTTTGCAAATACAAGAGACCACCTCAGTACCGTTTGTAAGCACCAGTCACCAAGAGATGGAATTGAACAAGAATGTGTGTCTACGACCAATCCTCAAATCCTCTTCAACGTCTCCCCAGGCTTCTACCTGTGCTTCAGAGAGAAGCTCCACCTCTGAGCTTCCTTTACTTGCCATCAGTGCTGAGGGTCATAGACTGACCCCTCTGACCGATGGAGCCTCCTCCAATGAGGAAGGAAGCAGCAATGATTTGAGAGCTCCTTCTCCAGTTCCTGATGGCTACATCACACCCTCATTCCCATTAGCATCACCCAGCTACCCACTTCTGACTGTTCCTCATGTTCCATACACAGGATACACTGAAGTTACTATTCCAGCCCCCCCTCTTCAACCTCCCTTACCTAACAAACAGCATGCCTCTCCTCTTCAGGAGCCCCAATCTGGCACCTCGTCCAGCAAATCCGCAGCACCTTCCAATTCTTCCCCTGAGGTACAGGTCTCCATCTTAACCACTGCAAATGAACAGATTTCCCCATCTAGACACAAAAGAGTGCCCCCTAAAGGAGTGGAGAATCGAGAGAGCCGTGTTAGCTCCAAGTTTGTGCAGGATAGCTCCAAGTTCTGGTACAAGCCCGGAATCTCCCGAGACCAGGCAATTGCTGTTCTGAAGGACAAGGACCCTGGTTGCTTCTTGATAAGGGACAGCAAATCATTCCAAGGTGCATACGGACTGGCCCTCAAAGTAGCAATACCTCCATCGCATGTAATTAACCATGTCAACAACCATAACTCTCAGGAGCATCTGGTCAGGCACTTCCTGATTGAGAGTGGAGCGAAAGGAGTAAAAATCAAAGGCTGTCACAACGAAACCTACTTTGGCTCACTGTCCGCACTAGTATATCATCACTCCATCGTGCCTGTCTCTCTGCCCTGCACTCTACGCATCCCAGACAAAGatcttGTAGGAGAGCTGCAGGAATTGCAGAGTGGCACCAACACCAGCACAGCTGCAGATCTGCTCAAGCAGGGGGCTGCCTGTAATGTTCTGTACCTGAACTCTGTGGACATTGAGTCTTTGACTGGGCCACAAGCTATCTCCAAAGCAATAAAGTCTACTCTGAACCAGGACCCCTGCCCATCAGCAACCACTGTCCACTTTAAAGTTTCAACACAGGGCATCACTCTCACAGACAATCAGCGCAGGTTATTCTTCAGGAGACATTACCCTATCCATAGTGTTACCTTTAGCAGTGTGGATCCACAGGATCAAAGGATGTTTGGGTTTGTAGCAAGGCGCAGTGGTAGCAGTCAGGGAAATGCGTGTCATCTGTTTGCGGAGCTTGACCCAGAACAGCCTGCCACTGCTATCGTCAATTTCATCAATAAAGTCATGCTGGGACCACAACAGCTGCGAAAGtaagagaagagatgagaaaagaagagaagaggagaagtgaagagaagctaaaagaagagaagggaaattaga

Function

GO: NA

KEGG:

id description
K18080 TNS; tensin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249129.3 True 4805 mRNA 0.50 26 37057442 37088492
XM_007249130.3 False 4776 mRNA 0.50 25 37057441 37088492

Neighbor

gene id symbol gene type direction distance location
LOC103046153 eif4b,LOC108441049 coding upstream 7033 37041366 ~ 37050408 (+)
LOC103021407 LOC108441035,LOC108272207 coding upstream 47251 36993982 ~ 37010190 (+)
apof NA coding upstream 67392 36985932 ~ 36990049 (+)
LOC103039123 LOC108441012,LOC105017220,LOC105897894 coding upstream 85743 36962226 ~ 36971698 (+)
os9 os9,LOC107711069,LOC107582707,LOC107673576,LOC107733587,LOC107585136 coding upstream 95874 36947965 ~ 36961567 (+)
LOC103044613 NA coding downstream 43082 37131574 ~ 37159320 (+)
LOC103043103 cnga3a,LOC108441138,LOC107585144,LOC107711084,LOC107733584,LOC108271559,LOC106560639 coding downstream 132828 37221320 ~ 37233209 (+)
gabrg3 gabrg3 coding downstream 531544 37620036 ~ 37829531 (+)
nipa1 nipa1 coding downstream 1059450 38147942 ~ 38154159 (+)
nipa2 nipa2,LOC107673599,LOC107582725,LOC107716965 coding downstream 1066607 38155099 ~ 38164964 (+)
G116466 NA non-coding upstream 43256 37011453 ~ 37014185 (+)
G116378 NA non-coding upstream 147792 36909203 ~ 36909649 (+)
G116360 NA non-coding upstream 214203 36840841 ~ 36843238 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding upstream 222919 36833489 ~ 36834522 (+)
G116356 LOC103042096,LOC108440962 non-coding upstream 229573 36825294 ~ 36827868 (+)
G116511 NA non-coding downstream 9762 37098254 ~ 37098533 (+)
G116507 NA non-coding downstream 33198 37121690 ~ 37124435 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding downstream 102578 37191070 ~ 37199094 (+)
G116539 NA non-coding downstream 163715 37252207 ~ 37252770 (+)
G116536 NA non-coding downstream 176784 37265276 ~ 37273002 (+)
LOC103044253 LOC108440873 other upstream 343557 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 697664 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 1069381 35982119 ~ 35988060 (+)
tomm6 NA other upstream 1089563 35958543 ~ 35967878 (+)
G115931 NA other upstream 1323082 35730379 ~ 35734359 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 11522 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 436359 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1301785 38390277 ~ 38394530 (+)
G116997 NA other downstream 2270379 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3710979 40799471 ~ 40808545 (+)

Expression


Co-expression Network