LOC103021407 (LOC108441035,LOC108272207)


Basic Information

Item Value
gene id LOC103021407
gene name LOC108441035,LOC108272207
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36993982 ~ 37010190 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249133.3
TGCCGCAGAACAGagagctGAGCGGAATGTAGTATCTGTGCGCtgtctgctggagtttttaacaaaatacagtaatacagaagATACAAACCCTACTCACTGTCTCAGAATGTCTCAGTGGGAGCGCTTGAAGCAGCTCGACTCGGTGTGTTTACAGAAGGTGGATGAGTTGTACAGTCGAGATGATTTTCCCATGGATGTAAGAGACTACCTAGCTCAGTGGATCGAGGACCAAGACTGGGAAGGTGCTTCACGCGACAGTTCCCGAGCAGTGGTTCTGTTCCAGATCTTGCTGGAGAATCTGGATAATCAATATAGTCGTTTCACACAGGAGCGGTGCTTCCTCATGCAGCGCAACTTCAAACGCTTTAAGCAGAACTTTCAGAGATTTCAAGAAGATCCATGTACTTTGGCTGAAATAATCAGCTGGTTCCTGAGGAGTGAGAAACGGATCCTAGAAGATGCAGAGCTAGCACAGGAAGTTCAGATGTTGCAGGTTCAGCCAAACCCTATGGAGACAGAGAGTCAGAGATACGTAGAGAAGAATGTCAGAGAGTTTAAGAACAAAGTTCAGGTAATGGAGCACTCATTGAGATGCCTGGAGGAACAACAAGATGAGTTTGACTTTAAATATCAGACGCACAGAATGGATGGTACAACTGATGGAGCTGAAAGAAACGAGCAGTTAAAGGTGCTGCAAGGAATGCTTAACAGGCTCAATAACTCCAGAATGATATTTCTCAGTGAGTTGTCAGCAATGTTGGATTCTGCTGAATCACTTCTAGCCAAGCTTACAGAGGATCTAGATCAGTGGAAGAGAAGACAGCAGATATCATGTATTGGTGCTCCAGAAGACACAAATCTGGACCCACTGGAGAAATGGTTCACACAGGTAGGGGATGGAATGTTCCAGCTACGCAAGTTCCTGCTGAAGTTGGAGGAGCTACTGGACAAGTTGAGCTATGATGAGGACCCTATCAAAGACCAGAAACCCATCCTGCAGGAACGTGTGGATACTCTATTAACCACCCTGATTAAGAGTGCTTTCATCGTGGAAACCCAGCCATCTATGCCGCAGGGTCGAGGCCCTCTTGTGCTGCGTACAAATGTTCAGTTCTCAGTCAAAGCCAGATTGCTGTTTAAGGTGCCTGAGCTCAACCATGCCATGAAAGTGAATGTGTCCATTGGCAATGATGCTCCTAATGTAAAAGGGTATCGCAGGTTCAATGTTCTTGGAACATCAAGTAAAGCTCTGAATATGTCTGAGAGCATGAATGGGGGCATGGTTGCAGACTTCAGACATTTGACTCTGAAAGAAAAGAAGGTTGGAGCAGGTGGAAAAGGAATTAATGATCTGTCTTTGAGTGTGACAGAGGAGCTCCACACCATACACTTTGAGACACAGTTTGAAATGCATGGCCTGTCAGTCTCTTTGGAGaccACCTCTCTCCCTGTGGTAGTGATCTCTAACTCCAGCCAGCAGCAGAGTGCCTGGGCTTCTGTTCTGTGGTTCAACATGCTCTGCCTTGACCCCAACAACCTGCTGTTTTTTGCGAGCTCTCCTGTAGCATCTTGGAGTCAGCTTGGTCAGATGCTGAGCTGGCAGTTTATAGCATGTGCTGAGCGTGGTCTGAATGAAGACCAGCTTGAGACTCTGGCTCAAAAACTCTTTGGTAAACAACAGAGTTATGACAATTGTAAAATATCCTGGACCAGATTTAGCAAGGAGAACATCAGTGGTCAAAGCTTCACGCACTGGGTCTGGCTGGATGGAATTCTAAACTTGGTCAAAGTTTACCTTTCACAGTTGTGGAATGACGGgtctATCCTGGGATTTGTAAGTAAGGGGAAGGAAAAGGTGTTGTTGAAGAAGAAGCAGGGTGGCACTTTCCTCCTACGCTTCAGTGAGAGCTGTAAAGATGGTGGAATCACATTCAGCTGGGTGGAGTACACTAATGATGGTGAACCCAACGTGCGATCAGTGCAGCCGTTCACCAGTGTAGACCTGAAGCAGATTCCATTGGCAGAGATCCTGCGCAACTTTCAGATCATGGAAGCAGAGAATGCTCCAGTCTACCCACTTCAGTTCCTCTACCCGAACACCCCCAAAGACCAGGCGTTTGGCAAATACTACAATGAGATGACTGGAGagcAAAGTCCatactttaaatacattaaaaccaAGCTGGTCTTCGTGTCAAAAGAGAATGGGTGTACAAGTGTGGCTGGGGAGCCAGTGCCTGACCTGTGCACGCAGCCCAATGACCGCTGCTCTGAAGAAGACATCATGCTGCGAGGGCCAGAGAGCTCACCCATGCTTTCCAACTGTACGAGCAACCCTGAGTCACCCAACGAATTTTTGGAAAACTCTTTAAACGGCCACCTTGAGTTCCcagatttacttaatttacctcCAGATAATTATGATGGCCTAAAGAATTCAGCCAATGGTGTTTCCGAATCCTTTCTGAACATCATTTCAGAGTCGTTTTCCCCAGTTTCTGATCTTACTACATTTCAGGAGTTTCTGAATGATCCACATCTCCTGGAAGGAATAGGCACTTTTTCTGAGTTTTCTGAGGGAATGCCTTTAACTCCCTGAACAATGATCTTCCAATGCTGTCCTGTGGCACTGAGACTGGAAAGTAGCATTCACTAACACAGAAGTCAATCAATAATGTAATGCAATCAAGATTATTAGCCCATTAGCAAAAGAAGATTTATGGTTCGCTTCGTCTCATTGTTTCACAGTCCTGCCCCTAAAGTAATTTTAcactgggatttttttttttctttcactgcCCCAACacagttaaattaatttaattattagtgAAGGggatgttttattatattacattaaaggATAACATACTTGATATAGCTAGGCTACTATTTCTATGCAGTAAATCAGACTAGAGTTGCACTAGATGTTTCACCTCACTGAGTTGTTGGTCTTACTGCAGGAGATAAAGAATTAGCTCTGAACTTGTCTGCCTTTTGCAGTGAAGTGCTTTTGCAGTGAAGTGCTTTTACCATGCAGGCAATACAAAATGCTCCAGTTAGAGCTCGTAAAAGAGCTTGTAAAAGTCAGTTCTGATTACAAATCCAAAACAagcaatgtgattttttttttgtatatagttgtaTGTAAGTTTTTTAAAGATGACCTGGTTTCCAAAAGGCATGTGAGATAAAAGTAGTTTATGTTGTGTGAAGTGACGAGCTTCTGTAGAAAGAGTAAATAAAATGCAAGTGAAGAGCGGGAGTAGAGGGAGTAGTCTGTCAGAACAGTCCAGCAGTTCTGTTTGATTTGgattaaaataaaggaaatgtTGCTTTTTACTCAGCAAAGTGTTTGTATTCAGTGAGTGCAGGAAAGATTCCATATGCTGCTATAAAACATCATTACTTAGGGAGAAAAACTATTCATATAGCAGCAGTTTACTAACAATGTTAGTAAACTAACAGTGTTATAAAAGGACACTGTAACATCTGTAGAGCTTAAATCTTACAAGTGATCAATTTTCCCCTGTTACACTTTCTCCCACGTGAATGCTGCTTACGTTCCCAGTCATGGTCTTTATAGCTACATGTTTGATGTTTAGTTCTTACTGGCTCGTACTCAGCTGCTCCAAAACCCTCAGCCTTTCATTCCTTTTGATGTTGACTCATTCTTCTTACGTATTCATTACATACAATATCAAATCTGTGTAATCTTTGATTGCAACTTTTTTTGATCATAGAGCTTTTTAAACAAACcttaatcatacatttaaaaatcgcTATCTCATAATCATAGAGCTAAGTCTGACATAAAAAGCTTGCAAAGAAATGGGTAATCTGTCTAGGGGAAagcagtgatttttttatgaatCAATGTAACATTTCATCGATTTgctgagaaataaaaagataCATTCCTTCCGTTGTAA
>XM_007249134.3
agctgtatgtttttctGTGTGCATGCTTGTTTGTCTTCCTTGTTCGAGGGTGACAGTGTTATGGTCGGCCTCTGTCAGCTGATttggtgatttttttgtgtgtacagGAGCGGAATGTAGTATCTGTGCGCtgtctgctggagtttttaacaaaatacagtaatacagaagATACAAACCCTACTCACTGTCTCAGAATGTCTCAGTGGGAGCGCTTGAAGCAGCTCGACTCGGTGTGTTTACAGAAGGTGGATGAGTTGTACAGTCGAGATGATTTTCCCATGGATGTAAGAGACTACCTAGCTCAGTGGATCGAGGACCAAGACTGGGAAGGTGCTTCACGCGACAGTTCCCGAGCAGTGGTTCTGTTCCAGATCTTGCTGGAGAATCTGGATAATCAATATAGTCGTTTCACACAGGAGCGGTGCTTCCTCATGCAGCGCAACTTCAAACGCTTTAAGCAGAACTTTCAGAGATTTCAAGAAGATCCATGTACTTTGGCTGAAATAATCAGCTGGTTCCTGAGGAGTGAGAAACGGATCCTAGAAGATGCAGAGCTAGCACAGGAAGTTCAGATGTTGCAGGTTCAGCCAAACCCTATGGAGACAGAGAGTCAGAGATACGTAGAGAAGAATGTCAGAGAGTTTAAGAACAAAGTTCAGGTAATGGAGCACTCATTGAGATGCCTGGAGGAACAACAAGATGAGTTTGACTTTAAATATCAGACGCACAGAATGGATGGTACAACTGATGGAGCTGAAAGAAACGAGCAGTTAAAGGTGCTGCAAGGAATGCTTAACAGGCTCAATAACTCCAGAATGATATTTCTCAGTGAGTTGTCAGCAATGTTGGATTCTGCTGAATCACTTCTAGCCAAGCTTACAGAGGATCTAGATCAGTGGAAGAGAAGACAGCAGATATCATGTATTGGTGCTCCAGAAGACACAAATCTGGACCCACTGGAGAAATGGTTCACACAGGTAGGGGATGGAATGTTCCAGCTACGCAAGTTCCTGCTGAAGTTGGAGGAGCTACTGGACAAGTTGAGCTATGATGAGGACCCTATCAAAGACCAGAAACCCATCCTGCAGGAACGTGTGGATACTCTATTAACCACCCTGATTAAGAGTGCTTTCATCGTGGAAACCCAGCCATCTATGCCGCAGGGTCGAGGCCCTCTTGTGCTGCGTACAAATGTTCAGTTCTCAGTCAAAGCCAGATTGCTGTTTAAGGTGCCTGAGCTCAACCATGCCATGAAAGTGAATGTGTCCATTGGCAATGATGCTCCTAATGTAAAAGGGTATCGCAGGTTCAATGTTCTTGGAACATCAAGTAAAGCTCTGAATATGTCTGAGAGCATGAATGGGGGCATGGTTGCAGACTTCAGACATTTGACTCTGAAAGAAAAGAAGGTTGGAGCAGGTGGAAAAGGAATTAATGATCTGTCTTTGAGTGTGACAGAGGAGCTCCACACCATACACTTTGAGACACAGTTTGAAATGCATGGCCTGTCAGTCTCTTTGGAGaccACCTCTCTCCCTGTGGTAGTGATCTCTAACTCCAGCCAGCAGCAGAGTGCCTGGGCTTCTGTTCTGTGGTTCAACATGCTCTGCCTTGACCCCAACAACCTGCTGTTTTTTGCGAGCTCTCCTGTAGCATCTTGGAGTCAGCTTGGTCAGATGCTGAGCTGGCAGTTTATAGCATGTGCTGAGCGTGGTCTGAATGAAGACCAGCTTGAGACTCTGGCTCAAAAACTCTTTGGTAAACAACAGAGTTATGACAATTGTAAAATATCCTGGACCAGATTTAGCAAGGAGAACATCAGTGGTCAAAGCTTCACGCACTGGGTCTGGCTGGATGGAATTCTAAACTTGGTCAAAGTTTACCTTTCACAGTTGTGGAATGACGGgtctATCCTGGGATTTGTAAGTAAGGGGAAGGAAAAGGTGTTGTTGAAGAAGAAGCAGGGTGGCACTTTCCTCCTACGCTTCAGTGAGAGCTGTAAAGATGGTGGAATCACATTCAGCTGGGTGGAGTACACTAATGATGGTGAACCCAACGTGCGATCAGTGCAGCCGTTCACCAGTGTAGACCTGAAGCAGATTCCATTGGCAGAGATCCTGCGCAACTTTCAGATCATGGAAGCAGAGAATGCTCCAGTCTACCCACTTCAGTTCCTCTACCCGAACACCCCCAAAGACCAGGCGTTTGGCAAATACTACAATGAGATGACTGGAGagcAAAGTCCatactttaaatacattaaaaccaAGCTGGTCTTCGTGTCAAAAGAACCGCTGCTCTGAAGAAGACATCATGCTGCGAGGGCCAGAGAGCTCACCCATGCTTTCCAACTGTACGAGCAACCCTGAGTCACCCAACGAATTTTTGGAAAACT

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0007165 signal transduction biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005488 binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249133.3 True 3935 mRNA 0.42 25 36993982 37010190
XM_007249134.3 False 2398 mRNA 0.46 23 36993997 37008624

Neighbor

gene id symbol gene type direction distance location
apof NA coding upstream 3933 36985932 ~ 36990049 (+)
LOC103039123 LOC108441012,LOC105017220,LOC105897894 coding upstream 22284 36962226 ~ 36971698 (+)
os9 os9,LOC107711069,LOC107582707,LOC107673576,LOC107733587,LOC107585136 coding upstream 32415 36947965 ~ 36961567 (+)
LOC103040047 NA coding upstream 74439 36904618 ~ 36919543 (+)
LOC103040875 krt4,LOC108440969,LOC107667388,LOC106565226,LOC107711067 coding upstream 111577 36876648 ~ 36882405 (+)
LOC103046153 eif4b,LOC108441049 coding downstream 31176 37041366 ~ 37050408 (+)
LOC103046872 NA coding downstream 47251 37057441 ~ 37088492 (+)
LOC103044613 NA coding downstream 121384 37131574 ~ 37159320 (+)
LOC103043103 cnga3a,LOC108441138,LOC107585144,LOC107711084,LOC107733584,LOC108271559,LOC106560639 coding downstream 211130 37221320 ~ 37233209 (+)
gabrg3 gabrg3 coding downstream 609846 37620036 ~ 37829531 (+)
G116378 NA non-coding upstream 84333 36909203 ~ 36909649 (+)
G116360 NA non-coding upstream 150744 36840841 ~ 36843238 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding upstream 159460 36833489 ~ 36834522 (+)
G116359 NA non-coding upstream 162406 36823464 ~ 36831576 (+)
G116466 NA non-coding downstream 1263 37011453 ~ 37014185 (+)
G116511 NA non-coding downstream 88064 37098254 ~ 37098533 (+)
G116507 NA non-coding downstream 111500 37121690 ~ 37124435 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding downstream 180880 37191070 ~ 37199094 (+)
G116539 NA non-coding downstream 242017 37252207 ~ 37252770 (+)
LOC103044253 LOC108440873 other upstream 280098 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 634205 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 1005922 35982119 ~ 35988060 (+)
tomm6 NA other upstream 1026104 35958543 ~ 35967878 (+)
G115931 NA other upstream 1259623 35730379 ~ 35734359 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 89824 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 514661 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1380087 38390277 ~ 38394530 (+)
G116997 NA other downstream 2348681 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3789281 40799471 ~ 40808545 (+)

Expression


Co-expression Network