parp3 (parp3,LOC107749614,LOC107673445)


Basic Information

Item Value
gene id parp3
gene name parp3,LOC107749614,LOC107673445
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 34761583 ~ 34772935 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253267.3
CGCCTCCCGGAGCTGACAGACTGGAGGAGCGTGTTGTTGGAGCACGGTGTTGTAGAGACGGAGAGTTTGATAGCTAGATTAACTAATTTATATACCTATTTATCAAACTGTTTCAAAGAGTCACCCTGACACACACAGCTGGTTAAAGCTTATTAAGCTGGTTTATTGTATCGAGGTTGTTACGATACAGGAAAGAGGATGGCTCCTAAGAGAAGAGCAGCGTCTGCAACTAAAGCAGGAGGAAAGAAGATAAAGGAGGAGCCTCCGACCCCAGTAAAAGACAAGTTCACATCTGCTAAAGAGACTCTGAAGGCTGCAGGACCACAGTCTAAGGCCAAGAGAAAACCAGACAGTGTTTGTTATCTATCAAATGCTGAGGTACATGAAGATTATGATTGTATGCTGAACCAGACAAACATtggaaataacaacaacaaatttTATGTAATTCAAGTCTTAGTGGATGGAGGCACATACTATTGCTGGACAAGATGGGGCAGAGTGGGAGAGTCAGGACAGAACAATTTAGCCGGCCCCACAAATGCTGATGCTGCCATTAAGAACTTTGAGAAGAAATTCAAAGACAAGACGAAGAACAACTGGAGTGACCGGGAAAACTTTGTCTCTCATTCCGGGAAGTACACTCTGATCGAGGTGGATGGTGACCAGGATGCTGAGGTGAAAGTTGATGCTGTAGATGGACGAGCTGCTGAAGTGAAAAAGAACATTCTGCCTTGCACACTAGACGATCCCACTCAAAGACTTATCAAGTTCATCTTCAACAACGACATGTTCAAAGAGGCCATGGAGAACATGAACCTAGACATTAAGAAGATGCCACTGGGGAAACTGAGCAAGCAGCAGATTGCTAAAGGCTTTGAAGCATTAGAGGAGATTGAAGAGGCCATAAAGAATAAAAGTCGTGAGAGCACACTCTCCGAGCTGTCTTCAAAGTTCTTCACCATAATTCCACATAACTTTGGCCGCAACAGACCTCCTGTCATCAATACTGATGAAATCATTCATAGCAAGAAGGAGATGCTTCTGGTCCTGGCTGATATAGAGATAGCCCAAAGCCTTAAAGCTGAGTCAGAAAAAGCTAAAGAGGAGATGGTGGAGACTGTACCTCATCCAATAGACCAGGACTACCAGTCTCTCAAATGCAACCTCTCCATACTGAAAAAGAAATCTAAAGAGTTTAAGATTATTGAGAAGTACTTGAAGGCCACTGGCCATGGACTCACCATAGTAGATGTATGGCAAGttgacagagaaaaagaggCAGAGCGCTTTAAAGAGAACAATGCTCTGGAGAACAGGAAGCTGCTGTGGCACGGCACTAATGTGGCAGTGGTTGCAGCTATTCTCAAGAGTGGCCTTCGCATCATGCCGCACTCCGGTGGACGAGTGGGCCAGGGGATCTACTTTGCCTCTGAAAATGAAAAGTCTGCTGGTTATGTCCGTCTTTCCAATAGGATTGGTATCATGTTTCTGAATGAAGTTGCTCTGGGAAGGGAGTACACAATCACTCAAGATGACCATACCCTACGAAAGGCTCCCGCCGGCTATGACAGTGTGGTAGCACGTGGAAGACAAGAACCAGaTTCCGCAAACGATGTCACCATTGATTTGGATGGGAAGAAGGTGACAGTGCCACAAGGAAAGGCTAAAAAACAGCCTCAGTATGAGGAAAGCTACTTCCACAACAGTGAGTATCTCATTTATAAAGAGAGTCAGTGCCGCATCCGCTACCTGCTGGAGCTCCGCTTCTAACTGCTGCACTTTCAGAAGTGTGGACCTCAAAAAAACACAGGTAACTGCTCAAGTTAAAAACACGAACGTTTATGTTGCACTTTACTAAGCAAGCTTCTTGCTTCTGAATGATAAATGTACTGTTAACCAAAGCCCTTACAGAGTCTGAGTTGCTCTTGACTTaatgttcagtttagttttaaaCACTGAACGTTATAGACTAATTTCCTGTTAAATATCATCCTGAAACTGTAATCGGTTCATCGTTTTGTCCTTTCAGTCCTGACATTTGGGCTGAAAGTTTAGACTTAtaggtgtgtttatttacaatCATACTTTATGTGACAAACATGTGAGGAAAATCTGGTTGTTGCTCACAAAGGCACTAAAACAGTTTTCTGTAATTTTGCATTTCCTTCCAATTTAAACCTTTTCAAAAATATGCATCATCCTAAAGTTCTGCTTTCATCAGTTTTATTATGCATTTACCAAACATGCCTTTGAAAAAAATAGCATGAAGATTGAATATGTTTTGcactatatatgtaaaaaagacattttgaaTGTTAAAACCTTTGAAAAACTGAAgtttttctacttttgtttGTCAGAAATGTAACCTTTCCAGTTGGGGGTTTGGGTTTTGTTAGAGAGTTTTCTGTTTGTTAAGTAGTCTCAGTAGTTTTGTTATTAAACATTGTATGAGCAACTGCAATGTTAATATTCTTGAAAAGAAAATAGCTTGTGTTATCTTCCTAATTAGGAGCAAAATCACTAACTAAGGAGCTTAACTTGTAAGAATTGCTTCATTTTATCTTTCCAACATTAACATCTGTCATacttatatttcatattttgacACAGTGGCTGCATGCTCATTATGTCTTCTGGTACATTACCGTTGACTTATATTTACTGAAATATTATCCACAGATGTTCTTTTGAAAGCATATTATAAAGTGCCAGTTTTATTATGCATCCCTACATATTGTACTACAGACATACTGTACATGATCCATTACAGTAGTTgtatgtgggtttttttttttgacagtctAACATGCTGCATagttatgttgcacatttgtTCGACTTGATTTGGAAGAAGTGAAAATATCCTAATGGTACTCTGGGTAATGCTTTTGTTGTAATGTTTCTAAAACATGTAACAAATAAATTGTTCTAAAACCTGAA

Function

symbol description
parp3 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Acts upstream of or within ectodermal placode development and regulation of neural crest formation. Predicted to be located in nucleus. Predicted to be active in nucleolus and site of double-strand break. Is expressed in axis and notochord. Orthologous to human PARP3 (poly(ADP-ribose) polymerase family member 3).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0090299 regulation of neural crest formation biological_process
GO:0006471 protein ADP-ribosylation biological_process
GO:0071696 ectodermal placode development biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K10798 PARP2_3_4; poly [ADP-ribose] polymerase 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253267.3 True 2946 mRNA 0.40 11 34761583 34772935

Neighbor

gene id symbol gene type direction distance location
LOC103035135 grm2,grm2a,LOC107657935,LOC107673619,LOC107567094 coding upstream 6280 34689863 ~ 34755303 (+)
LOC103036389 LOC107749613,LOC107673607,LOC107584457,LOC107750253,LOC108436268,LOC107567068 coding upstream 76552 34565966 ~ 34685031 (+)
fancd2 fancd2,LOC107749611,LOC107666962,LOC103399082 coding upstream 196844 34543069 ~ 34564739 (+)
usp4 usp4,LOC106583188 coding upstream 223011 34525267 ~ 34538572 (+)
emc3 emc3,LOC107667035,LOC107584459,LOC101173295 coding upstream 237497 34518790 ~ 34524086 (+)
LOC103034490 LOC108436251,LOC107658083,LOC107750281,LOC107584511,LOC107749617,LOC107567083,LOC107673479 coding downstream 4363 34777298 ~ 34779765 (+)
LOC103023460 NA coding downstream 25310 34798245 ~ 34804281 (+)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282 coding downstream 43043 34815978 ~ 34823709 (+)
hemk1 NA coding downstream 481161 35254096 ~ 35269371 (+)
LOC103022280 LOC103022280,LOC108436247,LOC108271634 coding downstream 689865 35462800 ~ 35471205 (+)
G115619 NA non-coding upstream 26656 34688232 ~ 34734927 (+)
G115614 NA non-coding upstream 75203 34672853 ~ 34686380 (+)
trnaf-gaa_1 NA non-coding upstream 334043 34427468 ~ 34427540 (+)
G115557 NA non-coding upstream 550709 34210118 ~ 34210874 (+)
G115512 NA non-coding upstream 644757 34116398 ~ 34116826 (+)
G115755 NA non-coding downstream 429982 35202917 ~ 35204176 (+)
G115757 NA non-coding downstream 464685 35237620 ~ 35238160 (+)
G115764 NA non-coding downstream 507674 35280609 ~ 35280927 (+)
G115765 NA non-coding downstream 515708 35288643 ~ 35289248 (+)
G115774 NA non-coding downstream 549027 35321962 ~ 35349945 (+)
LOC103038162 NA other upstream 369624 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 420839 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 664718 34095917 ~ 34096865 (+)
G115133 NA other upstream 2150380 32610449 ~ 32611203 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other upstream 2440928 32245266 ~ 32320655 (+)
G115736 NA other downstream 147766 34920701 ~ 35008942 (+)
LOC111193767 NA other downstream 284215 35057150 ~ 35130073 (+)
LOC103023619 cadps,LOC106953609 other downstream 517893 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 780666 35553601 ~ 35559726 (+)
G115917 NA other downstream 869939 35642874 ~ 35676035 (+)

Expression


Co-expression Network