rbm38 (rbm38,LOC103039930,LOC108436278)


Basic Information

Item Value
gene id rbm38
gene name rbm38,LOC103039930,LOC108436278
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 34330998 ~ 34340744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253282.2
AACCCCGGAAAAACACGAGGGGAGGTAGTATATCGCAGCGTGCGGAGCGGCGGAGCGGGGACTGGAGAGACACGCTGGAGACACGCAGTTTAGCGATGTTTAGCGTTGGTTAAAGACAAAAGACTAAAGTTTTAACACTGAGGAGTCTGAATCCTGGGCGAGCCTTTTGTTTCAAACGATACAATCCGTCTCGGATCATTTTAAACAACGGGTTCTATCCAGggctgtgtttatttctttatttttgttaatttgtttgcttgttttaagcTTCTGTCACAAGCTCTGCTGACTTGAGGTAGCCAATGCTTTTACACCAGTTCAAGAACGCCACGCTCGACGCTATGCACCCAACAGGAATCCAAAAAGACACTACTTTCACCAAGATCTTCGTTGGTGGGTTACCCTACCACACGAACGATGCTTCGCTGAGAAAGTACTTCGAGGCTTACGGCGACATAGACGAGGCTGTGGTCATAACGGACCGGCAGACGGGGAAATCCAGAGGATACGGCTTCGTGACGATGACTGACAGGGTGGCAGCCGAACGAGCCTGTAAAGACCCAAACCCCATCATTGATGGCCGGAAAGCCAATGTCAATCTGGCCTACCTCGGAGCCAAGCCACGCAGTCTCCAGACAGGGATATCTATAGGTGTGCAGCCCATCCACCCAGCACTTATTCAAAGACAGTATGGACTCGTCCCACAGTACGTCTACCCGCAGGCCTTCGTCCAGCCCAGCCTCATGCTCCCATCTCAGGTGGCCTCCTCAGTCAGCTCTCCATACCTGGACTACAGCACAGCCTACGCCCAGTATGCCTCAGCAGCCTTCGAGCACTACCCTTACGCCTCCTCTCCTGGCTTTGTGGGCTATGGCTACACTGCCAGCACCGCCTCTGGGGGTCCTTCTGCCCCTACTCCAGCCCAGACCCTCGCTAATGCAGCTGCAGCCACTCCTGCCTTCCTCCAGTACCCTCCACAGCAGCACTTGCAGCCTGAGCGCATGCAGTGAAGGATCGAGCAGTGTTTGGACCTGACTCTGCTCATGGGTCCCAGGAAACGTGAGGAATAGACTTTAATTGCACTGTCACGTTAGGATTTCGCTCCAGCTGTGGAGcccagaaaacagcaaaactgtGCAGTGACTTCAAAGGGCTTCCAGAAGCACTGATGCcaactattattataattattattattattattatttttactttcttcctctttcaatattcttcaaaataattaatattattgttactaTTATTCATGTTGCCATAAGCTTTAttatgttagtttttttttttttttttttgtcgttaATATCCATGTTTAATGTCCTTATGGTATATTATGATGTTCAGATCAATCAGTTTAAGGTGCCTGGTTGTGGAGTAGTGGACACAGTGGGAAAGGGTGCGAAAGACTGTATCAGGTGAACACTCAATGATGACTCTTTGGAAGGTGTATTGGGGGTATTGCTGCTTACGATACCTAGGGAGTAATGGggttttctttctccttttttttttttttataaagcgaTAAAAGGTCTGAGCTTACAAATAGCTGACGTAAACCATTAAGggggaggtaaaaaaaaaagaataaataaaattataaaaagaggGGGCAAGAAAGAACCCAACCATACATATCTTTAAATGGGGGGGAAAAtggaaaagttttttaaaataatggtgAGGCTTTAAAACTAGACTGtaaatttgtttcttttatttgtatACAGGGTTAACTGTGAACAAGCCACAAATTGCTTCCAAACAGAAGGTCATGTCTACAGTCCTCAGGCATGTTTAAGTCTAGAGACTTGGTAGATGGTATTTTAGAGTAAGGGTGCTAATTGAAGATCAGCTTTTTGATCGTAATTCAGTCTGTGTTGATGGCTGTGGCTAAATGCCATAAAGCAAAACTCTGATCTAAGAACAGATGTTGGGTTTAGGTGATGCTTCACATGTATCCCATGATTGAGATCATCGCTGATCATGATATGATGCAGTAAGCACAGGAGGCAGCAAACATTGGAGTTTAACAGGTATGGTAGCTGACACTGATACCTATGGTACATCAGTTTTGTGTAACTGTTAAAACTAAAGATTGTTGAATGTCTTCCTCTTTTAAAGTGACATTCATTATGTACAGCATTTTCAAAACGTTGCCACAAGTAAGTGCATTTTGCAGTATTTATGTTGATATTTAAGTGATCTGTGGTAATATTACTTTGTTTTATAAACTGCTGTCTCAAGTGCAAGCCCAGTGTATGCAACATACACACTGTTGCAGGCTTCTGGTCACTAGAAGagaatgtgtaaatagttaatttttcttttttttctttattcctcACCCCTTCCTTttaaatttatttgcataatttcTTCATAGATTATTAATCCACATGTGCACCTAAGggataattactttttttttttttttttttaagtacactATTAAGTCGCAGCTTGCACCTGCTGGCACATAATTGCTCTATGAAGCGTTTTTATGTCACATCATTTCAATATCTGCAACGAAAGCCATACCAAGGAAAATCTTGgggtaaaaaataaagactttatACTGAAAAGAAGA
>XR_001518742.2
AACCCCGGAAAAACACGAGGGGAGGTAGTATATCGCAGCGTGCGGAGCGGCGGAGCGGGGACTGGAGAGACACGCTGGAGACACGCAGTTTAGCGATGTTTAGCGTTGGTTAAAGACAAAAGACTAAAGTTTTAACACTGAGGAGTCTGAATCCTGGGCGAGCCTTTTGTTTCAAACGATACAATCCGTCTCGGATCATTTTAAACAACGGGTTCTATCCAGggctgtgtttatttctttatttttgttaatttgtttgcttgttttaagcTTCTGTCACAAGCTCTGCTGACTTGAGGTAGCCAATGCTTTTACACCAGTTCAAGAACGCCACGCTCGACGCTATGCACCCAACAGGAATCCAAAAAGACACTACTTTCACCAAGATCTTCGTTGGTGGGTTACCCTACCACACGAACGATGCTTCGCTGAGAAAGTACTTCGAGGCTTACGGCGACATAGACGAGGCTGTGGTCATAACGGACCGGCAGACGGGGAAATCCAGAGGATACGGCTTCGTGACGATGACTGACAGGGTGGCAGCCGAACGAGCCTGTAAAGACCCAAACCCCATCATTGATGGCCGGAAAGCCAATGTCAATCTGGCCTACCTCGGAGCCAAGCCACGCAGTCTCCAGACAGGGATATCTATAGGTGTGCAGCCCATCCACCCAGCACTTATTCAAAGACAGTATGGTTAATGGAGTGCATCATTTGAGGGAAGAAGATACTCGGGGGCTCAGGCTTTGCTGGAGCCTAATGTGGAGGTCCAGAGACCCTTAAGACTCGTCCCACAGTACGTCTACCCGCAGGCCTTCGTCCAGCCCAGCCTCATGCTCCCATCTCAGGTGGCCTCCTCAGTCAGCTCTCC

Function

symbol description
rbm38 Predicted to enable RNA binding activity. Predicted to be active in cytosol and nucleus. Is expressed in heart. Orthologous to human RBM38 (RNA binding motif protein 38).

NR:

description
PREDICTED: RNA-binding protein 38-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253282.2 True 2611 mRNA 0.42 4 34330998 34340744
XR_001518742.2 False 871 misc_RNA 0.51 5 34330998 34338917

Neighbor

gene id symbol gene type direction distance location
rae1 rae1 coding upstream 2536 34321952 ~ 34328462 (+)
LOC103041067 LOC108436281,LOC108271998,LOC105904609,LOC106565586 coding upstream 14272 34246931 ~ 34316726 (+)
LOC103027408 LOC108436255,LOC108271893 coding upstream 86133 34227343 ~ 34244865 (+)
thumpd3 thumpd3 coding upstream 105360 34217152 ~ 34225638 (+)
LOC103044649 LOC108427633,LOC108271939 coding upstream 563914 33730438 ~ 33767084 (+)
LOC103039118 NA coding downstream 20873 34361617 ~ 34367615 (+)
LOC103038804 LOC103038804,LOC108436276,LOC107714251,LOC106565806,LOC107654258,LOC108272120,LOC106582918 coding downstream 28245 34368989 ~ 34375412 (+)
LOC103038494 LOC108436254,LOC108271561 coding downstream 52152 34392896 ~ 34400139 (+)
LOC103037850 LOC108436275,LOC108271600,LOC105912153,LOC101066286 coding downstream 66647 34407391 ~ 34425310 (+)
LOC103037522 ip6k2a,LOC108436274,LOC107657877,LOC107713495,LOC107666997,LOC108272115,LOC107750247 coding downstream 145575 34486319 ~ 34492427 (+)
G115557 NA non-coding upstream 120124 34210118 ~ 34210874 (+)
G115512 NA non-coding upstream 214172 34116398 ~ 34116826 (+)
G115511 NA non-coding upstream 216720 34113596 ~ 34114278 (+)
G115443 NA non-coding upstream 662023 33668724 ~ 33668975 (+)
G115374 LOC108427631 non-coding upstream 861830 33440835 ~ 33469168 (+)
trnaf-gaa_1 NA non-coding downstream 86724 34427468 ~ 34427540 (+)
G115614 NA non-coding downstream 332109 34672853 ~ 34686380 (+)
G115619 NA non-coding downstream 347488 34688232 ~ 34734927 (+)
G115755 NA non-coding downstream 862173 35202917 ~ 35204176 (+)
G115757 NA non-coding downstream 896876 35237620 ~ 35238160 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 234133 34095917 ~ 34096865 (+)
G115133 NA other upstream 1719795 32610449 ~ 32611203 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other upstream 2010343 32245266 ~ 32320655 (+)
LOC103027407 prkag1,LOC107708574,LOC107686771,LOC107752861,LOC107690822,LOC107554882,LOC107582314 other upstream 2187176 32129305 ~ 32143822 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other upstream 2368113 31953014 ~ 31962885 (+)
LOC103038162 NA other downstream 39553 34380297 ~ 34391959 (+)
G115736 NA other downstream 579957 34920701 ~ 35008942 (+)
LOC111193767 NA other downstream 716406 35057150 ~ 35130073 (+)
LOC103023619 cadps,LOC106953609 other downstream 950084 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 1212857 35553601 ~ 35559726 (+)

Expression


Co-expression Network