LOC103022786 (LOC108427618)


Basic Information

Item Value
gene id LOC103022786
gene name LOC108427618
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 32631259 ~ 32644784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253315.3
GCCGTGTGGATCCAGCCAGTCTGTAGCAACACGGCGCGGCGTGGCTCGAGGGCGCCTTACTCATTGAGAGCGCGCGTGCTGTTTGTtggttttttaaacacattctctttttttttctcttgcacCGGAATGCATCATTTACACGAGGATATATCCGTGCTTTCTGCGAGGAAAAGGTTCAACCTGGATTTTTCCTGTATGTGAAAAGCATGCCACTTCTTTCTTGTTGTGAGAGGGCATTCTCACTTCACTTGGACTCCTTGACTTCCTCATAATCGGAGGACTAGTCAGGTTATTGGGAATCTACCTTTAAAAAACGGACAAACTCATTCATATCTAATTTATTAGAGGGCTGATCCAGGGAATGGTGGATTACACTCTCAATATTGAGGAGAACTTCTTGTCTTACGTTGACATAGACCCTGCTTCACCTGTTGTGTACCATTCGTCGGACATGGTGTTAGACTCAAGCAGCTACCAAGTGATGCCTTCGCCATTTTCTGAGGACGACCTCAGTGACGCATCGAGTCTGCGTTCCTGCTCCTCGCCAGATTCCCAGGTCCTCAGCTCCAGCTATGGCAGTTCGTCTAGCGCTGAGAACCAGGACAGCATTCTCAACTTCCTGCTGTCCCAGGCTTCTTTGGGTAATGGTACCAATGCCGAAGTGAGCCCTGGAACCCCAACCACTTTAGCAAGTGTCCTCTGGAACTCACAAAGGGAGAATGTAAAGGAAGAGAACTTTGACTTTCCGATATGGTCCTCAGCAAACATGGAGGCATCTGTTGAGCCCTTCCAGCCCACTCTGGAGGAAATTGAAGAGTTCCTAGAAGAGAACATGAGTGGAGTGGTGTCCCTTAAACATGAACCTAGAGAGGGTGGCTCACCCTTAGGGCTGGAGCTAGAGCTTGACCTTGGGATGGCAATGGGAGTGGAGGCTATGGAGGAGGCCTCACCCATGGCGCCTGAGACAAGCACCACTGGATCACAGCAAAATTCCGACCAAACCGTCCCAGTGGCTGATCTTCCAGGGAGCTCTGAATCTGCTAATGAGACCAAAAGCATGCACAGTAGCCCAGGTACTTCTGGTACAATAGCACACGCACAGGGTATTATAAAGAAGGAGGCACAAAGTACATCTGTCTCCACTAAGAATGAAACTAGCTCCAGTACCAAGAGTGATAACAGCGGCAGCACTGGAGTACCAGTAATTCTCCAAATCCAACCAATTCAGATCAAACAGGAAAATCAGGGAGCTAATGTGCCAGCCACCCTTTCCCCAGCAACTCAGTctctagctgctgcagacatcaAAATTGCCCAGCTGTTGCTGAACATCCAAGGGCAGACCTTCGCACTGGTCCCTCAGTTTCTTCCCACCGCTGGCTCCTCAGCTTCCACCTGCCTCAGTGCTTGCACTAAGTTTGTGCGGATAGCGCCTGTGCCCATTGCAGCGAAGCCTATTGGTAGCGGAGGGGATGGTGTTGCCTTGGGTGGAATCCAAGAAGGACTCTTAGCTGGAGGAGCGCAGAAGTTCCCCAAGAATCCAGTGGCAGATCTTATCAAAATGCACAAGTGCAACTTCCCAGGCTGTGCCAAGATGTACACCAAGAGCAGCCACCTGAAAGCGCACCTGAGAAGACATACTGGAGAGAAGCCCTTTGTCTGTAACTGGCCTGGCTGTAGATGGAAGTTTTCCCGCTCGGATGAGCTTTCCCGTCACCGGCGGTCCCATTCCGGCGTGAAACCGTACCAGTGTCCTGTGTGTGAGAAGAAGTTTGCTCGCAGTGACCACCTGTCCAAACACATCAAAGTCCACCGCTTTCCTCGAAGCAGCCGGACAGTCCGTCCAACTGCATGACGAGCCAACTACAAGACTCACTAATGCACAGAGGCAGGGACTGGGAGACAGATctccctgtgtttgtgtgtgtgtgtatatatgcacGTGCTATGATTTCGTGAAGGTGTACACACAACCCcccccagtgtgtgtgtatagatgggAGCGAGGTGACTGATGGAGGTAGCAGGAGAATCAGGCCTGAGCATTTGTTTGACTGCCTTTCACAGACAACAGTGCATGCATACACAGAATCACGACACACAGTCTCCTTCGCCCTtgtatttatagtgttttaGGTTAAACCTTGGTGACGAAGCATTGGCAGCGGGTCACCTCTGGTGCTACACTTTGTTTGGATTACGAAGAGGACAGGACTGGAATGAATACAGAAACTGCTACTAAGGGATCAGCCTATCCAAATAAGCTATGgggacacttttttttctaaatgacaCTAACTTTGAGTGAAGGTTAAGAAGAGCGGAATGACAATAGAAACGCAAAAAAGTCCTATCAGAGACAGTTAGAAAACTAAAATGTGCACAGTGTTgattgtacatatttatatgtatgCCTTCAAATCAGTGTTgccattttcttgtttttcttgttgagaggtgttttgtaaaaaaagatatttgCATTTTCGTCAGTATCGGCTCTTAACGGCTCTACTGTGTTTCGAAACGTCCTTTTTGGCCTTAGTCAACCACAAAGCTCTTATCTCAGGTGTGGCCTGGGTGCTGGATGAGGGGCTTAAAGGACAACTTGTAAAGCAAGTTATCACATGATTCAGACTGTAATGAAATCAGGGAGATATAGACCATAATAACAGTAATGCACTTAATTCAAATTGTTTGTACGCACATCATTTgtacagtcatgtaaaaaaaaaaaaaagcacacccAATGAAAACCTTTGTTTTATGGATATTAGGACGatattaagatatataaatgagtatatacagtaatacaaGGATCATTAGTGCCTTTTGGCCctcaaaacataaataaaatgacttatgagttatgagtttatcatatttataagacttcagaCTATACAGACATCATATTGAACCAACTTAATAAGCTTTAATGACAGCTTAATAAGCTTGACAACTACAGGGTGAACAGTTTTAGCTAAAATTGGCTTTTGGTGGAAACATGATTGACATGAATTGTTTCATAGATGATAttctagaatttttttttactgacagGATGGAAAGCATAGGGTTTACATCAAATTTTTAGtaaatgaatattattaatttctgaacatGCAGTGTGTATCTTCagtcccttaaaaataaaaaagtatgacAGTTGTTATGAAAATAGCtccattaaaaagttatttatccTAAATTGTTTTTCACGTGAGGAGAAAAGATATGCTAAGAACACATGCCcaggtttttaaatgtgtttaaaaagacaaaagtttTCATGGCATGCctaatttttttcatgactgtactgtataaaaatataatacaaagtATAGTACATTAAATCAGCACAAGTATTggcaaaaattaaagaaatcgaaAGACAATCTGTgatttttatatgtgtattacTTGTCGTGAAAGATGCAGCCTACATCTGCAGCTGCTATGTGAGGAACGATGGCACTTAATTAAACTTGATGAGTAAGACTCAGCTCACTCGACATTAGTAAATATACTGGAGCCTTTGGCCCGAGAGCCGGAAATCTCTTTCTTTTATCATTTCTGTGAAAAAAATCTGCCTCAGTACTCCGACCTGTTACTGGATTCCCTGCGTATCATTGTGCCACAGTGGCCTGTCATTGTGTACACTacacccccacccccaacccccttctcacacaaacacaatcatGCCCTTCCCAGTGTTTCTGTACCTTTTTAATTATGGTTATGTTACAATGTGAACACTATGTACTGTAACAAGCCAAATATTACACTTCAGCACTTGTCTGGGATTGTTCATGTTCATGCTGGTTAGGAAGGTTGGCGAGGTGCTTGAGGGCAAAACAGTGCTGAGTACTGAAGCTGCATGTGTAAGtcgagtttattattattttaagcactTCTGAATCATCTAATAGAGTATGGGGGAATACTTTCTTCCTTGTGTCACTTGTATGTTATCTGTCTGACCAAGGGCAcactatactgtacatacattttGGCATTCCTTCCATTCACAGACTGATTTGTATAAATGCTTGTTGATACACGGGTGTTTTAGGCCACATCCTATGAATGTATGTAAATAAAAGGGACATGTACATAGCTGCATCCGTACAAGAACGAAAGAAAATTaaagaagaaggaagaaagaaaattgGATAGCTAAAAAGTTGGCAATCATACTACAAGACTGTTTATGGTTGTAATTTTACTGTGTAATCCTAAATGTGTATATAGTAATgtttcagtataaatatataaatatatatatttttcccccTTGTACACAAAACCCATTTACAAATAAAGCATTGAAATGTAAATAA

Function

NR:

description
PREDICTED: Krueppel-like factor 15

GO: NA

KEGG:

id description
K09210 KLF15; krueppel-like factor 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253315.3 True 4355 mRNA 0.43 3 32631259 32644784

Neighbor

gene id symbol gene type direction distance location
LOC111193763 NA coding upstream 25527 32604957 ~ 32605732 (+)
zxdc NA coding upstream 30424 32591860 ~ 32600835 (+)
cpne9 cpne9,LOC106583634 coding upstream 41745 32450736 ~ 32589514 (+)
mtmr14 mtmr14,LOC106583633,LOC107716897 coding upstream 183123 32428981 ~ 32448136 (+)
setd5 setd5 coding upstream 274821 32324062 ~ 32356438 (+)
LOC103022276 LOC103022276,LOC108272091,LOC108427619,LOC105901876,LOC101480024,LOC100704523,LOC107586352 coding downstream 65722 32710506 ~ 32728257 (+)
LOC103021538 NA coding downstream 84555 32729339 ~ 32746968 (+)
LOC103045271 myl9,LOC103045271,LOC103386121,LOC100697131,LOC106565219 coding downstream 753224 33398008 ~ 33407467 (+)
LOC103044965 NA coding downstream 1031273 33676057 ~ 33726617 (+)
LOC103044649 LOC108427633,LOC108271939 coding downstream 1085654 33730438 ~ 33767084 (+)
G115137 NA non-coding upstream 13225 32615963 ~ 32618034 (+)
G115127 NA non-coding upstream 21394 32577378 ~ 32609865 (+)
G115106 NA non-coding upstream 337318 32292488 ~ 32293941 (+)
G115093 NA non-coding upstream 464207 32156019 ~ 32167052 (+)
G115030 NA non-coding upstream 699127 31931758 ~ 31932132 (+)
G115145 NA non-coding downstream 51520 32696304 ~ 32696897 (+)
G115278 txnrd3,txnrd1,LOC107705897,LOC107705821,LOC106565239 non-coding downstream 141098 32785882 ~ 32795500 (+)
G115288 NA non-coding downstream 156115 32800899 ~ 32801184 (+)
G115347 NA non-coding downstream 708548 33353332 ~ 33357929 (+)
G115350 tpra1,LOC107666698 non-coding downstream 715353 33360137 ~ 33363038 (+)
G115133 NA other upstream 20056 32610449 ~ 32611203 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other upstream 310604 32245266 ~ 32320655 (+)
LOC103027407 prkag1,LOC107708574,LOC107686771,LOC107752861,LOC107690822,LOC107554882,LOC107582314 other upstream 487437 32129305 ~ 32143822 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other upstream 668374 31953014 ~ 31962885 (+)
G115024 ngf,LOC103031633,LOC105909845 other upstream 736908 31893285 ~ 31894351 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other downstream 1451133 34095917 ~ 34096865 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other downstream 1686214 34330998 ~ 34340744 (+)
LOC103038162 NA other downstream 1735513 34380297 ~ 34391959 (+)
G115736 NA other downstream 2275917 34920701 ~ 35008942 (+)
LOC111193767 NA other downstream 2412366 35057150 ~ 35130073 (+)

Expression


Co-expression Network