LOC103034279 (si:dkey-238f9.1,LOC107729782,LOC103034279,LOC108427543,LOC108271548,LOC107666167,LOC107567673,LOC106582736,LOC106517667)


Basic Information

Item Value
gene id LOC103034279
gene name si:dkey-238f9.1,LOC107729782,LOC103034279,LOC108427543,LOC108271548,LOC107666167,LOC107567673,LOC106582736,LOC106517667
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 31417153 ~ 31569856 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253350.3
tcctctttcctcCGCTTCTGTGCCGTCTGTCCTCGCGCTCCCCCCGCCTACAGCTCCCGTGCAGGACTTGAGCCGCGCGCGCTCTCCCGGTGATGGATAAGGGAATTCTGTGGGAGAGCTGCATGTGCGCCCTTCCAGAACCTCAACCGGGACTGAGGAGCTCCGTCTAACTCCCCGCGtgctctcgccctctctctttctagctctcgctctctgtctcgcCGCGGGAAGTTTTTTTTCGGAGGTGGGAAGTTTTGGCGAGGCGCGAGCGCAGCGCACTTTGCGCCCCATAGAAGAACTAGAATTTGGGGAAGAAGGGGGGGAAAGTGATTTGGACAGAAAGAGACGCTTTTCTCCGCGAGTGATGCTTGTGATGCTTTTCTCGGGAGCGTCGTCGAGCGGAGGTGCTGATGCTGAGCCTCTGACGCGGCCGGAGCTCGTGCCTCTCTCCATGGAGCGCAAATGAGAGGCTTATTATCTACGCGGGTGTGCTAACAGCTCAGCGACAGgatgcGGGAGAGGGAGTTGTGGAGCGTGGGCAGGAGAGTGCTACTGCTTGGCGTCTGTCTGCTGTCTCTGTGGGGGCAGCTGAGCCTGGCCTCCTCACACCGTAGCCACATTGTGCACGTCAAAGCAGGAACCTGTGAGGTCATAGCAGCACACCGCTGCTGTAACAAGAACAAAATCGAAGAGCGTTCCCAAACTGTCAAGTGCTCCTGCTTCCCCGGGCAAGTCGCCGGCACCACCCGAGCGGCCCCCTCCTGCGTGGATGCATCTATTGTAGCACAGAAGTGGTGGTGCCAGATGCAGCCGTGCATGGAGGGAGAAGAATGTAAGGTGTTGCCGGATCTCAAGGGGTGGAGCTGCAGCACTGGGAACAAAGTGAAGACGACCAggGTCACACGATAGTCTGGGATGGGGATCTTCAGCACTCGTCGtcttttgctctgattacttAGATTGGACTAAGACTGCTCAAGGACAGTAGAAATCATGTATTTGGACTTCAGTGGAATACTGGCTTAAATAGAAATGGAAACGCTGTAAAAGAACCCTTTTGCCTTCCATGGTCAGCCTTCCAAACTTCCATCTATGTTTTATAGCTATTGGACAAGAACATCCatcatgtaaaatatgtatttgacAAGATATAGACATTAACTACGAACCAAGACATGGATTAATCAGAGGATACAGTGTGCGACACACTGCAGAACTATGGATTACTCTTTTTtcccatgtttttttctctctttttttgaaACCACGGTGGACTTAAGAAGTTCACTGACCGCGCTTGAAGTGTACGTGTTCCCGAGGCACTTGTGTTCAGTTCTCCACCCTTTGATGCcaatttctttcttcttcttgttttcttttttttttggaatatttttGATCTTTGTGAGGTGTTTAATTTTAAGGATGATTTCAGAGCTTGTGTTTTGAAATGAACTTGTgccattgaaagaaaaaaaaaatctatatattaaGATAAAAGTTTAAACTATGGTTATAGTGGTTGGAATCTGGCAGAGGTTCACTGCGCCAGTGAAAATGAATATAGCTTTGCAACCTCAGAtatgctgtttgttttttcaaatcTTGGTGACCGCTATTGAGTAAAAGTGTAAGTATTATCTCAAATAAAAGTATCTCGATGGGAAACCTTCAA

Function

NR:

description
PREDICTED: protein FAM19A2-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253350.3 True 1675 mRNA 0.49 5 31417153 31569856

Neighbor

gene id symbol gene type direction distance location
LOC103034927 LOC108427590 coding upstream 67239 31332545 ~ 31349914 (+)
LOC103029625 LOC107708099,LOC108271793,LOC107655781,LOC107666178,LOC107549309,LOC107729733,LOC107569802 coding upstream 132314 31270025 ~ 31284839 (+)
LOC103036086 LOC103036086 coding upstream 154113 31234183 ~ 31263040 (+)
LOC103036390 LOC108427585,LOC108272160,LOC107655778,LOC107708163 coding upstream 185322 31185467 ~ 31231831 (+)
padi2 padi2,LOC100380857 coding upstream 485936 30907329 ~ 30931217 (+)
LOC103033959 LOC108427594,LOC108272164 coding downstream 208221 31778077 ~ 31787521 (+)
LOC103032899 slc16a1a,LOC103032899,LOC108427596,LOC108272179,LOC107666031,LOC107554177 coding downstream 227816 31797672 ~ 31810212 (+)
sycp1 NA coding downstream 246730 31816586 ~ 31825662 (+)
LOC103029304 NA coding downstream 260407 31830263 ~ 31843917 (+)
LOC103031950 LOC108427598,LOC108271946,LOC106566040,LOC105007568,LOC107554200,LOC107685798,LOC107708156 coding downstream 279011 31848867 ~ 31855053 (+)
G114955 NA non-coding upstream 10590 31406296 ~ 31406563 (+)
G114911 capza1,LOC103046653,LOC107655783,LOC105908306,LOC107666111,LOC106582739,LOC108271791 non-coding upstream 87677 31314456 ~ 31329476 (+)
G114910 NA non-coding upstream 102805 31313735 ~ 31314348 (+)
G114867 LOC103036684,LOC108427584,LOC108231650,LOC107666081,LOC107729743,LOC107549315 non-coding upstream 302614 31110333 ~ 31114539 (+)
G114754 NA non-coding upstream 765103 30651006 ~ 30652050 (+)
G114978 NA non-coding downstream 27843 31597699 ~ 31597930 (+)
G114979 NA non-coding downstream 47917 31617773 ~ 31618350 (+)
G114994 NA non-coding downstream 109050 31678906 ~ 31679326 (+)
G114996 NA non-coding downstream 124589 31694445 ~ 31694654 (+)
G115027 NA non-coding downstream 347114 31916970 ~ 31917304 (+)
G114841 NA other upstream 536600 30850309 ~ 30880553 (+)
G114698 NA other upstream 1287257 30126335 ~ 30129896 (+)
LOC111193669 NA other upstream 1529175 29882371 ~ 29887978 (+)
LOC103044650 LOC108427558 other upstream 2135842 29207743 ~ 29281311 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 3927631 27391014 ~ 27489522 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 323429 31893285 ~ 31894351 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other downstream 383158 31953014 ~ 31962885 (+)
LOC103027407 prkag1,LOC107708574,LOC107686771,LOC107752861,LOC107690822,LOC107554882,LOC107582314 other downstream 559449 32129305 ~ 32143822 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other downstream 675410 32245266 ~ 32320655 (+)
G115133 NA other downstream 1040593 32610449 ~ 32611203 (+)

Expression


Co-expression Network