LOC103034927 (LOC108427590)


Basic Information

Item Value
gene id LOC103034927
gene name LOC108427590
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 31332545 ~ 31349914 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253352.3
CCTGTGTGAACCGGTCGCTGTCCTGTAACCAAATAACCGCAGGTCTAGAGTCTCCTGCCGGAGCCATGCCTTCTCTCAGAGCTGCTTTTGAAGTCGGGCTGGATTTTCTGGAGTTCCTTGGGGAACGAAAAtccaaaacagacaaaaaggaACTCCGGGACATCTACAACTTAGAGTTTAAAAGGGAAGGAACCAATGAGCCAAATTTTTCCAGGCTGGTCTTTGCCCTTCAGCACTTCAACAAAGCCAGTATAAGGCATGGCAAAGTTATCCTACATGCCAAATCCCAGGTGCGTGTTTACTACTGTGACCAGTGGAGGTCAGTGGCAGGGTCCAGAACTGATAATGTTGGAGCCACAGCTTCAGCCTCCGCTCACTCATCTTCACCTACTGTTAACCCAGTCCTCACTTCAAAGAAAAAACTGGCTAAAGAAGTCCTTCAGAGACTTAGGGTAAACAGAGCAGAACTGATCTCTGATAAAGGAAGCATTAAAATCACTTCTGATCCAGAGAGCACCAATGGAAAAGTTGTGTTGAACATCGACCTCGTGGACAGGGTGTATGTGGTGAAGTTTCACATTGAGAACGTGGGGCAAAACTGCATTTACTTCAGCTTCTACACGGCCCTGCACTGGATGCGATGCTTTACTTTAGTGGACGAGAGGAGAGTGACCAGGGTTTGCCCTCTGCTTCTCTGTCCAGGTGAGAGCTATGTGGTAGAGGTGCATTACCACATTCATCACTACGGACATTTCCCCGCCACCATGTACTTTGAATTCTGCCCTGAATCAGAGGACTCCAGCCCCTCCAAACCTTTCTGCATTGTAAGGGAACTGGAGGTGGTGATCCAGACCAAGTTGGCTGCAGAACTGGGCCCAGAGAGCCCCTACACACCCAAGCAGAGGGGAAGGTACAGACCTGAGAACCGAGTAGTGGAAGAGGGTGTCCCACCTGAAAGTGGTGTGACACATTCTCTGAAGCAGGAGGTGAAGCTAAAGGACTATAAGTACCCTGCTTACCTGAAAGACTTGGTGAAACACCGGTTAGCTGATACAGAGAAGCTTTCCCCAGCAGCTAGATTACAGCTACCCAGAGTGAAAGCCGTGTTGGAGACTCCGTTGTGTATAAAGCAGTATGCAGAACGTTTCCACCTCCTCCTGCATCTAGAGGAGATTCAGATGGAAGTAGACATAAAGAAGTATGATCTGTACAACCAGACCATGACACAAGACATAACCAACAAAAAGCTGCTGGTGTTAAAGGTTCCAGGCGTCGCAGAGAACAGGCCATCTGTGTTGAGAGGAGATCacttgaatgtgtgtgtgtctgaagaCAAAGCCAAACCTGTCACCATGTACAAAGGCTATGTCCATCGTGTGGAGCTGGATCGTGTTAAGTTGGGCTTTTCTAAGAAGCTTGTACAGAAGTTTGTTAGTAATATGAAGTTTGATGTGGAGTTCAACATCAACCGCTTCCCTCTTAAACTCCAGCACCGAGCTGTAGATCTGGCTGTACAACACAAGCTGGGAAATGTTTTGTTCCCCAGTGGTAATAAAGTCGAACCTCCAGCAGTGCCAAAgctcagCATGTTTAATCGAGATCTGGAGAGCAACCCTGAGCAGAGCACTGCAGTTCAGCACATTCTGTCTGGCCATTCTAAGCCAGGTCCATACCTGATATTTGGACCTCCTGGCACGGGCAAAACAGTTACATTAGTGGAGGCCATAAAGCAGGTGAATAGGTCCGGTACTGTTGCCCATGTCCTGGCTTGTGCTCCCTCCAACAGTGCCTGTGATCTGCTGTGTGAGAGGTTGCTAAGATACGTGGATGGCCATCACCTCTATCGTCTCTGTGCCAGCAGTAGAGACCCCCGCACTATGCCACAGAAACTACTGAAACACAGTAACTGGGATGAAGGGCAGGACAGCTTCATCCTCCCATCTAAAGAGACTCTGATGGGCTACAGTGTTATTGTGGTCACGCTGATCACTGCTGGAAGGCTTGTATCTGGAGGTGTCCCGGTTGGTCACTTCACACACGTCTTCATAGATGAGGCTGGCCAAGCTGTGGAACCTGAGTGTGTTGTTGGGATTGCAGGTCTCCTCCATCCTGAGAAAGGTCAGGTGGTTTTGGCAGGAGACCCTCAGCAGCTTGGACCTATCTTGAGATCTCCACTGGCACAGCAACATGGGCTGGGACTGTCACTGCTGGAGAGACTGATGACCCAGAACTCGCTCTATCAGAAGACTCATGATGGCTCCCAGGCTTACAACAGCTGCTTTGTCACGAAGCTCCTGCGCAACTACAGGTCGCACCCTGCCATCCTCGAGATTCCTAATGAGCTTTTCTATGACAATGAACTACAAGTTTTTGCAGACCAGATGGAGAGAGAAGCTTTCTGCCACTGGGAGCATCTCCCTAAACAGGGCTTCCCAGTAATATTCCATGGAGTGATGGGGAAAGACGAGAGAGAAGCGAACAGTCCATCTTTCTTCAATGTCAGTGAGATCGAGGTCCTCATCAGCTATCTccaaaagctaaagctaactcAGGGAAAGAAGGGCCTTCCTAAACTCAAGCCTGCTGACATTGGCATCATTGCTCCTTACAGGAAACAAGTGGAGAAAATCAGGAAAGCCCTACAAACAGTAAAAGAATTAAAACAGTGGAATGATATTAAGGTGggctctgtggaggaatttcaGGGACAGGAGAAAAGGGTGATCATGGTGTCTGCAGTCAGAAGCAGCATAAGCTATGTGAAGATGGACCAAGACTTTAACATTGGCTTCCTCACAAACGAGAAgagGTTTAATGTAGCCATGACCAGAGCCAAAGCCCTGCTCATTGTGGTAGGAAACCCAGTCATCCTCAACAAGAATCCCACCTGGCAGAGGTTCATCCAGTACTGTGAACAAGAGCAGGGCTACACTGGTTTTGACTACAGAGATGCTGAGGGGGAGGAAGATGTGGTGACCCGACTGGCATCTCTAAAAATTCATACTGCCACTGAAGaaaTAGAAGAGAGCACACTGCAACAGAATGTGCATCCAGAATGGAGGAGTGAACAGTGAACCACCTACAGACCGGCTGTCAATCAGTCGACAGTGTACTTGCCATTAAACTGAGAACCATGGTAAAGCATTGCAGCAGTTTTTCCCCCTGAAGGCATCATTCTTATTCGTTTTTAGATGCTACTTACCGGCATGTCTATATTTTAGTTAAGCTAGTTAAGAATCACTGGAAgtatcaagaaaaaaaatactacataatCTTCCAAATGGGATGCCTATAAAATTGGACttgagttttattgttttgagtttaaattaatttcttATACATAAAGTTGGTGGAAATTAccatttactgtacatccttaGCTTTTCTATTCTTAATGCATTGCGCTTAGTTCTAAAGCCTTATAATTGCAGTACATCTCCTAAATACTTCATTTAGAATTTTAGCTCAAAAGAAAAAGGTCCACTTAATTTTGTTCTACTTGTCCTTGCTATGCAAAGACCACcctattttgtctattttcaaatatgtataaaatatttttttatacaaagtGTTGCAGTTTTTGcatattattttaatgcactgtataaaaaaattcCACTCTTCTACAGAATCATCTTGTtgcaaaaaaaggtttattatcATGGGTTGGTTTCACTGAAACATTAACTGCAATACTAGTTCTGCTTACAAAGAATTATTACAATGAGTGCTCATATAAATctgtattatatagtttttcatattCAGTACTTCCGACTAAAGAGGAAGACCATAGCAATGTGAAAGCTTGTTCATATGAAGGGTAACCAAGAATTGAATTGCAGGTAATGACAGTGGATTTGATTAGTTAGTGTTTCTGCCACAATACAAAgggccaaaacaaaaaaagagaaagaaaacagaagcaGAAGTGTGCTCGATTTTGTGTTGTCTGACTTTTCGGTGCTTTGTAATTGCCAGATGAGCTGCTCTTGTGTAATGCCCTCTTACCCTACATTCCTTGGCTTTATCCATGGCAAACTGTAAACTCTAAGAATGGTCACTTGtcctgtactgtattgtattgttctGTAAGCTTGGTGTTTGCTCTGGGAACTCAGGAGAGCTGGTAAACTTCCAATAAAGAACAATGTCTTTGGAGTGACAGATAAGGGGCACATAAAcagcacagatttttttttagttgcttAGTGCAGGTTCTGTGCAAGAATTAATTCATCTACCACAGCTCACCAGCAGGGGGCAGTAAACTGTAAATCTGCAAATCATTTCTTCCTTTGCACAGTCAGCAACAGATGATGTCACAACAACATCACTACTGGCATGCAACACAAGAACAGTAATCATGTTCtgcaaatattaataaaacttaCTCCAATACTACATTCAATACTTTTAATTATACCTGTAATAAGAGTGGGCAACTCAAAAGACGGTGGAAGGCACGCAGGTAGTTAATTACAGTGGGTAGAAGCACTGATGGCCACTACACATGATCAAAACAAACCTCAAAGTGTACAAATATCTGTATGGCGGGTTTGTTTTTACTGCTATTTTATGGCCTATTTAACAGGGTTCTCTTGGTTTGGCAGGGCAATTTAGATCTAATCATAGCAGAACCAATCATATCATCGGTCACTCAAGAGGATTACTGAACCCAGGCCAGAACAGAGTAGTATAGATATAGATGTAGATCGAACAACTGAATTAGACTGCATGTATTTATGCCTCTGTATACATAAAATCACCAAAGGTGAGGGCAGTGcagtttaaataaacaattaataagcagaaaagaaaaaatatatagttactTATATTCAAGAGGAGTGCCAAACTAGTTCTGTGCAAATACATTCAAATCTGAAGAAAACTCAAAAGGCACCAATTCCATTAACACACACTGCGCTATATGTTAATTTTTCACCTAATATCTCAAATTCAAAATTCAAATGAAGAAGACCTCATGCCACATTTAGGATATAATAACCGTTATCTGGGCAACGACATAAGAC

Function

NR:

description
PREDICTED: putative helicase mov-10-B.1

GO: NA

KEGG:

id description
K18422 MOV10; helicase MOV-10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253352.3 True 5042 mRNA 0.43 22 31332545 31349914

Neighbor

gene id symbol gene type direction distance location
LOC103029625 LOC107708099,LOC108271793,LOC107655781,LOC107666178,LOC107549309,LOC107729733,LOC107569802 coding upstream 47706 31270025 ~ 31284839 (+)
LOC103036086 LOC103036086 coding upstream 69505 31234183 ~ 31263040 (+)
LOC103036390 LOC108427585,LOC108272160,LOC107655778,LOC107708163 coding upstream 100714 31185467 ~ 31231831 (+)
padi2 padi2,LOC100380857 coding upstream 401328 30907329 ~ 30931217 (+)
LOC103038582 NA coding upstream 757853 30534127 ~ 30574692 (+)
LOC103034279 si:dkey-238f9.1,LOC107729782,LOC103034279,LOC108427543,LOC108271548,LOC107666167,LOC107567673,LOC106582736,LOC106517667 coding downstream 67239 31417153 ~ 31569856 (+)
LOC103033959 LOC108427594,LOC108272164 coding downstream 428163 31778077 ~ 31787521 (+)
LOC103032899 slc16a1a,LOC103032899,LOC108427596,LOC108272179,LOC107666031,LOC107554177 coding downstream 447758 31797672 ~ 31810212 (+)
sycp1 NA coding downstream 466672 31816586 ~ 31825662 (+)
LOC103029304 NA coding downstream 480349 31830263 ~ 31843917 (+)
G114911 capza1,LOC103046653,LOC107655783,LOC105908306,LOC107666111,LOC106582739,LOC108271791 non-coding upstream 3069 31314456 ~ 31329476 (+)
G114910 NA non-coding upstream 18197 31313735 ~ 31314348 (+)
G114867 LOC103036684,LOC108427584,LOC108231650,LOC107666081,LOC107729743,LOC107549315 non-coding upstream 218006 31110333 ~ 31114539 (+)
G114754 NA non-coding upstream 680495 30651006 ~ 30652050 (+)
G114752 NA non-coding upstream 695189 30626573 ~ 30637356 (+)
G114955 NA non-coding downstream 56382 31406296 ~ 31406563 (+)
G114978 NA non-coding downstream 247785 31597699 ~ 31597930 (+)
G114979 NA non-coding downstream 267859 31617773 ~ 31618350 (+)
G114994 NA non-coding downstream 328992 31678906 ~ 31679326 (+)
G114996 NA non-coding downstream 344531 31694445 ~ 31694654 (+)
G114841 NA other upstream 451992 30850309 ~ 30880553 (+)
G114698 NA other upstream 1202649 30126335 ~ 30129896 (+)
LOC111193669 NA other upstream 1444567 29882371 ~ 29887978 (+)
LOC103044650 LOC108427558 other upstream 2051234 29207743 ~ 29281311 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 3843023 27391014 ~ 27489522 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 543371 31893285 ~ 31894351 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other downstream 603100 31953014 ~ 31962885 (+)
LOC103027407 prkag1,LOC107708574,LOC107686771,LOC107752861,LOC107690822,LOC107554882,LOC107582314 other downstream 779391 32129305 ~ 32143822 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other downstream 895352 32245266 ~ 32320655 (+)
G115133 NA other downstream 1260535 32610449 ~ 32611203 (+)

Expression


Co-expression Network