LOC103040768 (LOC103040768,LOC108427541)


Basic Information

Item Value
gene id LOC103040768
gene name LOC103040768,LOC108427541
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 29899564 ~ 29917753 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253370.3
CACTGGCCCTGTATTTACTTGTTATCGGATGGATAacaaaattcccggtatcgcccacctgTAGTCTCTATCAGTGGTACAATATTTTAAGAAAGAACCACCGATCATTATGTATTTTGCTTCTGAACAAGACTAGGAGGTTAAATTAAGGTTACTTAAATTGTGGTTTTCCATCATCAGTTTTAAACGatttaatgcaaacaaaatacaacgtttattcaatgttctttACTGTCAGGGTTTGGGCTACGTTTTCTCAATGCTCGATTTAGTGCACAGCTTCATTACGCATTAATCGCCATGTCCCATGTTCCATCTAGCGGTGGAAATGTGCTCGTGCGGCGGCTCGCTAAAAACACCCAaacactctctcatacacacacacacacacgcgcgcacacacataaAGCTGAGATACACTTCAAGCtttcagagacagagagaagtgCTGTACAGCACCGGAACACCAGTAACGGCCCCCAGTTCGGCGGGTGGATGGATCAGATTTAGAACTGCGCGCGCTGCTCTCCAGCCTCTAAGAGTGtacaatccatcatccatcacgcatttaaaaaaaacaccaaaccaGAAAAATGCGCTCCAGGAAAAAACAAGCACTCAGCAGTCTCCCAGCCGCGCTCCAGCGCCTCCAATGACCGCCGGCTGAGCACTGAGACCGCAGTGCGCCTTTACGCGCTTCGCTCCCATGGAGAGCCCTGGATCCTGGGCGCTGAACGCGTCGCGCAACGCGAGCCGCGCGCCAAACCCTCTGAAGCGCGATGAAGAAGTGGCCAAGGTGGAGGTGGCCGTGCTCGTGCTCGTCCTGCTGCTAGCGGTGGTGGGCAACGCGTGCGTGCTGGCGGCCGTGGCGGTGGCGGGCGCGCGCAAACGCGGCACGTCCCGCATGCACTTCTTCATGAAGCACCTGAGCATCGCGGACCTGGTGGTGGCCGTGTTCCAGGTTCTGCCGCAGCTCATCTGGGACATCACCTTCCGCTTCTACGGGCCGGACGCGCTGTGCCGCCTCGTTAAGTACCTGCAGGTGGTGGGCATGTTCGCCTCCACCTACGTCCTCGTGCTGATGTCCGTGGACCGCTGCCTGGCCGTGTGGCGGCCGCTGCGCACGCTGCGCCACCACCGCGCCGAGCGCACCTACGTGCTGGCCTCGTGGGCGCTGAGCCTCGTGCTGAGCGCGCCGCAGGCCTGCATCTTCAAGCTGAAGGAAGTGGGCGACGGCGTGTACGACTGCTGGGGCGACTTCGTGCAGCCGTGGGGCGCCAAGGCCTACGTCACGTGGATCAGCCTGGCCGTCTACGTCATCCCGGTGACCGTGCTCAGCGTGTGCTATGGCCTCATCAGCTGGAAGGTGTGGCAGAACTTCAGGCTGAAGACCGGGCGGAGCAAGCGCGCGCCCAACGGCGCCGAGGTCACGGCGGGGGCCGGGGTCGGAGCTGGTGCGCTCGCGCGGGTCAGCAGCGTGCGCCTCATCTCCGAAGCCAAGATGAGGACGGTGAAGATGACGCTGGTGATCGTGGTGGCCTACATCGTGTGCTGGACGCCCTTCTTCTTTGTGCAGATGTGGGCAGCGTGGGACCCCTTGGCGCCCAGAGAggCAATGGCGTTCATCATTGCCATGCTTCTGGCTAGCCTAAACAGCTGCTGTAACCCCTGGATCTACATGTTTTTCGCCGGTCACCTGTTCCGGGACTTGATGCGGAGCTGCATGATGGCATTACACTGCGGCTGTGGGGAGCAGCAGAGTCCAAAGAGCCAGTCGGGTGCCATTGTGATGAAGAGCACCTGCAGTCAGAGGAGCTTGACTCAGACCACCACTACATAACACACCACTCTGCAGATTTACACTACAGGGAGAATGCAGGAGTCCAACATGTTGCTAATGAAGCTCTAAAACTGAGGAGAAAGTTCCACAAAAGTATAAACTAGAGATCTATTTAGATCAACTGTAATTTAATACTCATTTGGACTGAACTGAACAATGAACAAGAAGATGTTCTCAGGATCCATTCATTTgtgcttcatttgtaaaaacAAACCATGCACACATTTTGTCTGCAGGCCCCCTAGTATTAAtttcactgaatgaatgtagGAAAACAAgaggaaaatattgattaaatatgttttttgctgttttaaatctgtttttagtGGAGTTATGACCCATGCATGCTCATGCAGTACAtagtaaaatacaatataagtaTCCATAAGTATCCAGACACTTCTTTTAATGAGATACTGACACAGGTGTTTAGTTGCGCATGCACAGTTTGTTTTTATCTGACACTTTCTAGCATGCTGGAGCTCAAGACAACATCTCTGGGATAAGTGAATTTGGAATTTTTGATCTGTAACTAATTATTCAATGTCAGaacctttgtttcagtgttccaaAAATCTAGGGCAAGCCATTTGCACAAATGTAGAGTTTATTACCAGTGCAAAGAGagaacaaacattttatttgtaaatgttttattaccCATAATTTCTAAAGCAACTCTGGATTAGAAGGTTTTTACAATCCTTTGAGCATATAGTGTATTTGACCTGTAGGACCAGCATGTTCTGTGTTCTACCATGTTTTCATTGCTGTATAAACGATGCTGTGTTTTTTCCCAAGTTAATGTCCAAGCTCATTCAGGGCACATTTTGTTTCTGTACAAAagtgtttattattgtatatataggCATATATAAGGCAACACATCACATTTATTCCACTTGTGTAATATCTCCAACAGAGTGGCACCTAACTGAACAACCCAGAAAACAGGAGAACCCTATATAGTCCCATTTTACTTTAGTGCAAGAGGCACATTTGGGACACTGTCTAGTAGGGTTGTTATAGAAGGCACTTCAAAATTGCGCCATTATCTACTGAAAGGTAAGAAAAAACTTATTCAGAGTTTATTTCCCCCAAAAGAAGGGCATCCAGTAGGATGCTTTGTCTCAATTTTGCCTTTTTAGAGGGCACTTTAACttaacttttacacttttacaacCATAAGGGCACCAATGGAAGCGGTTGCACCCTCTGCTCACCTTCTTCAAGTCGACCTTCCTCAAATTCACCTGTGGTTAGATGTATGTGactaattattagttttttaaataaaaaaaaaatgaaccatCTACTTTTTACAGTATATGACAAAGTATAATGTCCAATGTGTGTTAAATAAGTTTGATCACAGAATTCAGTAACTGCCCagtaatttgtttatttgttttgaggTGTTTTTGCAGCATTAATTAACATATTGGTACCATTGTTACAGTGCAGGAAAGTTGGAAAGCTGTACAAAAATATCCAGAAACTGATACTAACTGAGGTTCCTTCCTCCCCTAtcttagatatttaaaaaatacatatatatatataagattgtGTGAGTATTCCAACCCAGCAGGGGGCAGTAACACATTACCCAGTTCAATGCCATGTGTAAAAACTAATGTAATTTAGTTCTCAAACGGCAGATAAACCCATGCATCTAAACACGGGCAAAATGACTTGTCTTCTGTATTGTTGTGGTGTCAGTGACTGGTCATAACCAGCATTGAACTGGAGGCCTTACTGTAGTTTTGTCACACAAACCTTTTTGCCCTGAgatttttattctgtgtttactGTTCTCGCTGTTTATGACTGAATGAcatgaaatgactgaaatatgCTTTCAGAAATGTGTCTGGTTGTGAATAATGTGTGTAAAAGTGAAATATTGCATCGAAAACAAAGATACTCAATGCTAAAA

Function

NR:

description
isotocin receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004990 oxytocin receptor activity molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253370.3 True 3782 mRNA 0.46 3 29899564 29917753

Neighbor

gene id symbol gene type direction distance location
LOC103032161 LOC108427567 coding upstream 171227 29712485 ~ 29728337 (+)
stau1 stau1 coding upstream 189778 29698600 ~ 29709786 (+)
LOC103043238 pbrm1l,LOC108427561 coding upstream 201925 29682650 ~ 29697639 (+)
LOC111193761 LOC108427564 coding upstream 261277 29630925 ~ 29638287 (+)
LOC103032776 NA coding upstream 269319 29620360 ~ 29630245 (+)
LOC103041068 NA coding downstream 6596 29924349 ~ 29949961 (+)
LOC103038582 NA coding downstream 616374 30534127 ~ 30574692 (+)
padi2 padi2,LOC100380857 coding downstream 989576 30907329 ~ 30931217 (+)
LOC103036390 LOC108427585,LOC108272160,LOC107655778,LOC107708163 coding downstream 1267714 31185467 ~ 31231831 (+)
LOC103036086 LOC103036086 coding downstream 1316430 31234183 ~ 31263040 (+)
G114627 NA non-coding upstream 59844 29839262 ~ 29839720 (+)
G114623 NA non-coding upstream 66062 29833196 ~ 29833502 (+)
G114480 NA non-coding upstream 300484 29521807 ~ 29599080 (+)
G114474 NA non-coding upstream 341873 29458027 ~ 29557691 (+)
G114475 NA non-coding upstream 423997 29474846 ~ 29475567 (+)
G114640 NA non-coding downstream 40845 29958598 ~ 29959049 (+)
G114643 NA non-coding downstream 52182 29969935 ~ 29970956 (+)
G114647 NA non-coding downstream 61861 29979614 ~ 29979838 (+)
G114676 LOC108427574 non-coding downstream 143425 30061178 ~ 30111760 (+)
G114712 NA non-coding downstream 307350 30225103 ~ 30225315 (+)
LOC111193669 NA other upstream 11586 29882371 ~ 29887978 (+)
LOC103044650 LOC108427558 other upstream 618253 29207743 ~ 29281311 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 2410042 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 2547120 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 4502581 25342153 ~ 25396983 (+)
G114698 NA other downstream 208582 30126335 ~ 30129896 (+)
G114841 NA other downstream 932556 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 1975532 31893285 ~ 31894351 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other downstream 2035261 31953014 ~ 31962885 (+)
LOC103027407 prkag1,LOC107708574,LOC107686771,LOC107752861,LOC107690822,LOC107554882,LOC107582314 other downstream 2211552 32129305 ~ 32143822 (+)

Expression


Co-expression Network