rbp7 (rbp7,LOC107713528,LOC107666991,LOC107555975,LOC107708738)


Basic Information

Item Value
gene id rbp7
gene name rbp7,LOC107713528,LOC107666991,LOC107555975,LOC107708738
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 29267706 ~ 29271449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253387.2
ACATtgttctcctgcagctcccCTGAGACATATCCTTCCCAAGTATGCAAAACGTTAGAATCAGACCCAGAGAACTGCCCTTCCGAGCCGGCCTTTAAAATAGCCATTGTGTCAGAGGGATCACCCCTGCCCCATATTACTACACACAGGACACTCAGCGAACTGAAATCCGACACATCACATCTGTGACTCTTTTACACGCCTTAATGCGCTTAAATTCCAACTGCCCAGGCCAAGACAATCCAGAAGTTGCAGAAGGTGTCTGACTCTCCTCAGAGTGAATCTCAAACATGCCAGCCAACTACAGCGGGACGTGGGACATCgtggaaaatgaaaactttGAGGCGTACATGGTTGCCCTTGGAATTGATTTTGCGACGCGGAAGATAGCGGGCATGCTGAAGCCTCAGAAAGTGATTGAGCAAGATGGAGATTCTTTCGACATCAAAACTCTGACCTCCTTCAGAAACTACTCATGCACTTTCAAAGTCGGCGAGGAGTTTGAGGAGGTGACCAAAGGCCTGGACAACAGAAAATGCAAGACGCTGGTCAACTGGGATGGTGACAAGCTGGTGTGTGTGCAGAAAGGAGAGATCAAAGACAGAGGATGGACTCACTGGATAGAGGGAGATGTTCTCTATCTTgaACTCAGATGTGGAGACAAAACCTGCAAACAAACCTATAAGAAAACTGCTTGATTTCAAGTTAACTGgaataaatgtcttttttagaTACTTTAGAAGTGAACTGTTTTACTACTACAATCTGTTGGTTTTATTCTTTTGGttgaaacaaataaacatcTATTCAAATAACTACATGATGTCTGTatgaagtgaaataaaccacATTTTAATAACTAGTGTAAGACTGTGCAATTTCTTTCCCAATAACTGAATGAAATATGCTGTATTATCATGTTTAACGTGTTtaacattaaaagtaaattcaacCGAAAACCTATAGGAAAAATGCTTGATTTGAAATTAACTAgtataaatgtcttttttagaTACTTTAGAAGTGAACTGTTTTCctactacaatttttttttttttttttttttttgtttgaaccAATTAAACATCTATGCAAATAAGTACATGATGTCTGTATGaaataagtgaaataaaccaCATTTTAAGTACTA

Function

symbol description
rbp7 Predicted to enable retinoid binding activity. Predicted to be located in cytoplasm.

NR:

description
retinoid-binding protein 7

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253387.2 True 1150 mRNA 0.39 4 29267706 29271449

Neighbor

gene id symbol gene type direction distance location
h6pd h6pd coding upstream 8623 29245281 ~ 29259083 (+)
shmt2 shmt2,LOC103359782,LOC106515133 coding upstream 135643 29090843 ~ 29132063 (+)
nxph4 nxph4 coding upstream 182262 28994206 ~ 29085444 (+)
stac3 stac3 coding upstream 402923 28849141 ~ 28864783 (+)
r3hdm2 r3hdm2 coding upstream 420351 28770225 ~ 28847355 (+)
c13h3orf67 NA coding downstream 288282 29559731 ~ 29609556 (+)
LOC103032776 NA coding downstream 348911 29620360 ~ 29630245 (+)
LOC111193761 LOC108427564 coding downstream 359476 29630925 ~ 29638287 (+)
LOC103043238 pbrm1l,LOC108427561 coding downstream 411201 29682650 ~ 29697639 (+)
stau1 stau1 coding downstream 427151 29698600 ~ 29709786 (+)
G114433 NA non-coding upstream 7020 29183414 ~ 29260686 (+)
G114402 NA non-coding upstream 282067 28931924 ~ 28985639 (+)
G114405 NA non-coding upstream 290248 28976831 ~ 28977458 (+)
G114400 NA non-coding upstream 336110 28931350 ~ 28931596 (+)
G114399 NA non-coding upstream 340889 28926415 ~ 28926817 (+)
G114439 tardbp,LOC108427558,LOC105025427 non-coding downstream 10009 29281458 ~ 29282414 (+)
G114474 NA non-coding downstream 186578 29458027 ~ 29557691 (+)
G114475 NA non-coding downstream 203397 29474846 ~ 29475567 (+)
G114480 NA non-coding downstream 250358 29521807 ~ 29599080 (+)
G114623 NA non-coding downstream 561747 29833196 ~ 29833502 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 1778184 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 1915262 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 3870723 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 4005485 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 4013576 25250384 ~ 25254130 (+)
LOC111193669 NA other downstream 610922 29882371 ~ 29887978 (+)
G114698 NA other downstream 854886 30126335 ~ 30129896 (+)
G114841 NA other downstream 1578860 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 2621836 31893285 ~ 31894351 (+)
LOC103031324 kcna3a,LOC108427600,LOC108271529,LOC107729772,LOC107666172,LOC107708155,LOC107554199,LOC107685799 other downstream 2681565 31953014 ~ 31962885 (+)

Expression


Co-expression Network