shmt2 (shmt2,LOC103359782,LOC106515133)


Basic Information

Item Value
gene id shmt2
gene name shmt2,LOC103359782,LOC106515133
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 29090843 ~ 29132063 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253393.3
CTTGTGGGACCAACGTGTGCAGGCAGAGCCTCGAGACGCCGCTCGCtcgttcactcactcactcagcgCTGCCGTGATGTTGACACTGACACTGAGACAGCTCGCCCGGCCCCTGTGCCAGCGTGGCCCTGCAGCATTGAGCACAGGCCTGAGGTGGCAGCACTCTGCAGCTGCTCGAGCAGCTGAGCATGACAGGCCCTGGACCGGACAAGACAGTCTGGCTCAAGATGACCCCGAGATGTGGGACCTGttgcagaaagagaaagacagacagtgtCGTGGTCTGGAACTCATTGCCTCAGagAatttctgcagcagagcagctctTGAGGCCCAAGGCTCCTGTCTCAATAACAAGTACTCAGAAGGCTACCCAGGAAAGAGGTATTATGGTGGTGCAGAGGTTGTGGACCAGATCGAACTGCTGTGTCAGAAGCGGGCTCTGGAGGCTTTTGATTTGGATCCATCACGCTGGGGTGTCAACGTGCAGCCCTACTCAGGCTCCCCTGCCAACTTTGCTGCTTACACTGCTGTCCTCAAGCCCCATGACCGTCTGATGGGCTTGGACCTGCCTGATGGAGGACAtctTACCCATGGCTACATGTCTGACGTGAAGCGTATCTCTGCTACCTCTATCTATTTTGAGTCCATGCCCTACAAGCTCAATCCTAAAACAGGTCTAATAGACTATGACCAGATGGAGACGACTGCAAAGCTGTTCAGGCCCAAGCTGATCATTGCTGGCACCAGTGCCTACGCCCGCCTCATTGACTACGCCCGCATCAAGAAGCTGTGTACAGAGTTAAATGCGTATCTGCTGGCAGACATGGCCCACATTAGTGGCCTTGTGGCTGCTAAAGCTATTCCCTCTCCATTTGAGCACGCTGACCTTGTCACCACTACCACACACAAATCCCTCAGAGGAGCcagGGCTGGGTTAATATTCTATCGGAAAGGCGTTCGCTCGGTGGACAAGAAAGGTGCTGAAGTCAAGTATGACCTTGAGGACAAGGTCAATTTCTCCGTCTTCCCCTCGCTTCAGGGTGGACCCCACAATCACGCCATCGCTGGGGTCGCTGTAGCTCTCCGACAGGCCAACACCCCAATGTTCAGAGAGTATATTGCACAAGTCATAAAGAATGCGAAGTCCATGGCCAATGCTTTGCTGAAGAAAAATTACACTCTTGTGTCAGgtgGGACTGATAATCACCTGGTGCTGGTAGATTTGAGGCCTCAGGGAATGGACGGTGCTCGAGCAGAGAGGGTTCTGGAGCTTGTTTCCATCACTGCTAACAAAAACACCTGCCCAGGGGACAAGAGCGCAATTACACCAGGAGGCCTCCGACTAGGTGCCCCTGCGCTGACATCTCGGCAGTTCAAAGAAGCAGACTTCGAACAGGTTGTGGAATTTATGGATGAAGGCTTCAAAATCGCTTTGGACGTCAAGAAAAAGACCAAAAAGCTAGCCGAGTTTAAGAGTTTCCTGCTGGAGGATCCAGAGACAGTGGCCCGCATCGCTGACCTGCGGCACCGTGTGGAGGCTTTTGCCCGGCCCTTCCCAATGCCAGGCTTCCATGACCACTAACTACTAAGTTGACTAAGAGACAGACAAGCAGACAGTGAGCGAGAAACAGTGGTGAATCTACACACCCATGTAGGAGCCTTGCAGCTTTTTGCAGCAAAGTAAACAGTAAGAAGAAGGTGATTAGTTTCAGACAGTATTTTGAGCCTTTGTTTATCAGGCACCTTGTTGGTAAATGCAGAAAGTGAGGTGTTGGTAAATGCCATGGAGGATATATATGTGGTCATCATGCACGATTATGCTGAACCAATGAACAAATCAATTTATTAACTCCAATGTCTTAAAGTCTTGAAGAGGCCAGTAGTGCAAACATACAGTTCTGCATTCTGAAAGCTTTCTTGTTTCAGCATATTTTTCTGAAACAAGTGCCAGCAGGCTCACATTCAGAATAACACGAGCAGTGCTTTAACAGTCACAACTGATGTGTAACTGATGGGATGTCCAAATATTGTGGCTCTGTGATCTAGATTTTATAATGCTGGAGTTCCAAGTAGAACATGCTTAATCAGTTGAATTGAGCTGATATTAATTGATGGACTTGCCAAACTAAAACTGTGAAGCACAATTTGGACAATtctagttgtagtagtagtattaattaAGGTCTGGAACTGTTGTAGACTAACAACAATTCATGtcttggatttctttttttttttttttttctttttaatttagaaATTAACATTACATTGCGAACAAGTTGTGTTAAGaacaaaactgatttaaactgaTCCTTGCACTACATTGGCACTCATTGTGTATACAGATCATTTTTCACCTCTCATGTCTTAATATTAACCTGCAGAACAAATgagttattttctttttcaccCTAACAACTGCTGCTGCACtcaaactaagaaaaaaaaatacattaattgttatttatataggaaaactaaaacgCACATATGTTTCAAACTTAGAGTCTAATATAAGTAAGAGCTTATGATGGAAGTCATTAATGAATTGTGGAGTATGTAAATGGAGCTAAAGATAACATGGGAAATGGGAGTCTTGCCCAATGTAGTACAGGTACTTTGTTTAACTGTTGAAATGTATTGTTACTAGATATGTTTTGGTTAATTAACCTACTTACCACCCACCCCTCACTAACTCAGTTGGTTTTAGgggaaaataaatgtgaaaatgtaatgatataatgataatccTGACCAAACGTTATAAGGTACTGATGAAATAGTCTGAGGGTAAGAGATAGATATTTTTGATGTACGCGTCTTGTTTTCTCCATGTCCACCAGCAAAGCCTACAGTAGCCTCTGGTTTCccccttaaaggagaactccggtgtcaaatggacttggggtgttgtgatagcccacctccatgccctgtgcactttcaaagctctCATTGTAAGCATATTGGGAGCATTCGGCTAAAAACGCTGTGTTGCAGAATGCTGGGGGTAAACGGAAGTgagctatttgacaaaagtatgtactcattatcatgttttactacaatccaagtccattttacatcagCTTTTACCTTTAACTCTAGTCTATCACTCTCCAGAATGCTGCCTAAGAGACATTTTTATCTGTGAAGTTTTTTAAACTGACCTTTACAACCTTTATAAGTGTACAATTTTGTAAGAAAATCTAATCCCAATAAACATGTGCAGTAATTAAA

Function

symbol description
shmt2 Enables glycine hydroxymethyltransferase activity and pyridoxal phosphate binding activity. Predicted to be involved in several processes, including L-serine metabolic process; folic acid-containing compound metabolic process; and protein homotetramerization. Predicted to act upstream of or within methylation. Located in mitochondrion. Is expressed in digestive system; heart; muscle; nervous system; and pleuroperitoneal region. Used to study schizophrenia. Orthologous to human SHMT2 (serine hydroxymethyltransferase 2).

NR:

description
serine hydroxymethyltransferase, mitochondrial

GO: NA

KEGG:

id description
K00600 glyA, SHMT; glycine hydroxymethyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253393.3 True 3246 mRNA 0.45 12 29090843 29132063

Neighbor

gene id symbol gene type direction distance location
nxph4 nxph4 coding upstream 5399 28994206 ~ 29085444 (+)
stac3 stac3 coding upstream 226060 28849141 ~ 28864783 (+)
r3hdm2 r3hdm2 coding upstream 243488 28770225 ~ 28847355 (+)
arhgap9 arhgap9 coding upstream 501353 28517631 ~ 28589490 (+)
ddit3 ddit3,LOC106582666 coding upstream 598531 28486708 ~ 28492312 (+)
h6pd h6pd coding downstream 113218 29245281 ~ 29259083 (+)
rbp7 rbp7,LOC107713528,LOC107666991,LOC107555975,LOC107708738 coding downstream 135643 29267706 ~ 29271449 (+)
c13h3orf67 NA coding downstream 427668 29559731 ~ 29609556 (+)
LOC103032776 NA coding downstream 488297 29620360 ~ 29630245 (+)
LOC111193761 LOC108427564 coding downstream 498862 29630925 ~ 29638287 (+)
G114402 NA non-coding upstream 105204 28931924 ~ 28985639 (+)
G114405 NA non-coding upstream 113385 28976831 ~ 28977458 (+)
G114400 NA non-coding upstream 159247 28931350 ~ 28931596 (+)
G114399 NA non-coding upstream 164026 28926415 ~ 28926817 (+)
G114392 NA non-coding upstream 209988 28877249 ~ 28880855 (+)
G114433 NA non-coding downstream 51351 29183414 ~ 29260686 (+)
G114438 NA non-coding downstream 98144 29230207 ~ 29284778 (+)
G114439 tardbp,LOC108427558,LOC105025427 non-coding downstream 149395 29281458 ~ 29282414 (+)
G114474 NA non-coding downstream 325964 29458027 ~ 29557691 (+)
G114475 NA non-coding downstream 342783 29474846 ~ 29475567 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 1601321 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 1738399 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 3693860 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 3828622 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 3836713 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 75680 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 750308 29882371 ~ 29887978 (+)
G114698 NA other downstream 994272 30126335 ~ 30129896 (+)
G114841 NA other downstream 1718246 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 2761222 31893285 ~ 31894351 (+)

Expression


Co-expression Network