nxph4 (nxph4)


Basic Information

Item Value
gene id nxph4
gene name nxph4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28994206 ~ 29085444 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253394.2
AAGTTCCCTCCGCTCGCGCTCCAACTTTTCTCCGCTCCTcctcagagcagcagcagcagcagcgctatGGATGTGTATGAGAGCCGCTCTCAGGACTGCAGCAGCTGAACCCTCTCCTCACACTGTAACTCTCACCCCGGTGCTGCACTATTACTATCACTACTGTTTCACGGGGGAAAAAAAGCACGCGCATCCTCACACACCTGTCAGACAGCGCGTGCGGTGTTTTTTCTCCCCTGTTGGCTGAGCGTGCTCGGTGTATGTCCACTCAACGGGACTAATATCCAGTGGGAGGTCGCTTTCGGAAGGTGCCATGAGGCTGCTCTGGTGGAGCTTGCTGATCCTGGACCAGTGGATTCTGCGAAAGGTGCATGGCCTGGGAAAACAGGTTAGCAAATCTGTCGATTACCCAGAGCTAGGAGCAACAGGGTCCATCCTGAAGACCCTCCCATATGGTGTAGCCGGTGGAAGGGTGATAGAGGCACCAGGAGGAGTCAAGCCAGACATCCATAAGCCCAGGATACACTCCACTCTGGACCACATGCCCACAAAGCCCAAACTCTCCACCTACGGCTCCCACAGTCCGTACGGCTGGGGCAAGAACCAGACGCATCTCCTAGATCAGACAGGTTACCACCCCAAGCGCAAGACTCCGCTCAAAACGGCCACCAAGACCAAGAAGATCTTCGGCTGGGGAGACTTCTACTTCAACGTGCAGACCCTGAAGTTCAGACTGCTGGTGACGGGAAAGATCGTAGACCACGTCAACGGAACTTTTACCGTCTTCTTCCGCCACAACTCATCCAGCCTTGGAAACGTCTCCGTCAGCATCGTGCCGCCGTCCAAAGTGGTAGAGTTTGAAGTTCTTCAGCAGCAGCAAAGCACCCTTCATCAGCCAGAGATCCATTTCCACCAGCCTCATCAGTCAACCATCGACCCCAAGGACATCAAAACCTTTAACTGTCGCGTGGAGTACGAGAAGACCGACCGCTCCAAGAAGTCCAAGCCCTGCCTGTACGACCCGTCTCAAATTTGCTTCACCGAGCACACCCAGTCCCATGCCGCCTGGCTCTGCTCAAAGCCTTTTAAAGTCATCTGCATCTTCATCTCCTTCTTCAGCATCGACTATAAGCTGGTGCAGAAGGTCTGCCCAGACTACAATTTTCAGAGCCAACAACCGTACTTTGGATGAGTGGGGGCAAACTGAAGGAAGCAGGGGGTTGACCGACGAGTGGGATGTTGTTGTGTGTCTTCTGTCTATTCCACGTTCTCGAGATTCTGTTAAAAGAATGTGGAACACGCAAGAAATGCTAAACCTGGTGGACACTTTACCAAGACGCTTGGAAGAGGTTTTTGTTCTGAGTTTTctttgtatatactgtaaacagATCCAGCTCAGTTAAActcttaatatttatttattgtttttcgtTGACTtttgtctgtctgactgttaGAAATAATTTTGGAAGAATGATGGTGAACATggaatttttatattattcctTTATATGACCCTGCACACTCTGGAGTGTCTTAGTATGAGCGCCGTATTGTATGTGAAACTGATCGTAGCACAGATTATAACAGCATCAAAAAGCAGAACTGCAGCCAGCGCTGGCAGATTGTTGAGGTCCATACTAGGAGTGGGTGATATGATCAAAATATAACATCATATTAAGAAATACAGCCTTGAAGTGATATTAATATACTGTTATTTAAAGGAACAAGTTGCCAACAAAACCTAATTAACTAGATTTATTGTGTACACACagctaaaacatatttaatatctgacgTATGCTTATTTGTTAGACTAACATTGCTAACCAACACTGGACCTGGACTGTTATCTTGGCAAATATtcaaacaaaattatattttagttgcataacagtatattaaaaagttGATAAAACAATAACTGTGGATAGATCTTAATTAAACTCTAATTTCTCCTATGCTGTTTATCCTTAAGCTGGACCACGATGGGCAGAACAATACCATATTTTGTACTAAGGTAAAAGTGGTTGCGGTTACTCAAAATAATGACCAGAGTTAGTGCACAGATTTCCTAATTCAAAGTAGGGACTGACCCAAAGAGCCTGTGGTGAGGTATGTGTCACagaccatttaaaatatttacatttactgcatttagctgatgctcttacccagagtgacttacaaggttattcctattataGAGGGGGCCCAATGtaatgttaggagtcttgcccaaggactcttattggtgtagcacagcatactGTCACCTAGACCTGGAATTAaacccagtctcccacatgatagCTCACTGGAAGGCGGTGGTGTTATTCATTGCACCACAccaagttccttacagcactttgtcctttactttaactcattaagtgagactgtgtgtgagtgtgtgatcaTATGGTTATATTTATAGAATGTAGCAGTGTTGGgctagtgctggagataaaactagcttcTTTTAAAAGTATGTATGTTTTGCCTCTACAGGTCTGTCCCAACTATTTTAACAATTCAAGCGCTTTCTTAACATTCCATATAACTAGTTCTGACCTAATAACaacatgaatgagctgctaATACAATTCTGCTTTTTCAATTTTGAATTTGATATCAATAGTCAGAAACAGGTCCAGGCTTTTATGGGTTAAGACTAATCTAATTAAGAAACCTAATaaagagagctggattttagctcagtaatgaGATTTCTCAATTTGTGCATGGAAACAAATGTATAAAGTGGAaatatgtgagcagtgtttagtgcaGAACCTGCGAGATAGCAACATAACACTATCTTAGCGATGTAATCTTTATCTTCTAGCAgatgtttgttattttgtggcttgatgtgtttaaaaaggCTGCCACATTAAATTTTATTGAGATTATTGGCTGGTTCCAAAGCAGAAATCTCATTATTGCCTGACTCATGCAAACTTTGAGTTTTCCTATTATCTAATTACtgaagttaagtaaactcaaaaaTCGGATTACTGACAAACTGCAATGGTTAGCACTAATTGGATTATAAACTGCATGCAAATGCTTTTTATGGATTTTTAAGTGAAGATCTGGAGGCATTATGAGCTGGATTATAGACATTGTTTATGTTCACATTTAAGAAGAGCATCAATCAAGTGGAGCTAAAgagcaaataaaatattatttaatcaaataaaactataaaatgtatgaatatagaTGTTGTTTAGACTTGTAAGACCAAATGGCATGAATAAAAGCAgaattaaaagctaaaatagtacaagtaaaatttaaaaaaataataccaaTGATAAGAAGAAGACCATTCTAaatatacaatactatatatTCTGGGCACATATGGATTTTAGCCTCTGCAT

Function

symbol description
nxph4 Predicted to enable signaling receptor binding activity. Predicted to be located in extracellular region.

NR:

description
PREDICTED: neurexophilin-4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253394.2 True 3392 mRNA 0.42 2 28994206 29085444

Neighbor

gene id symbol gene type direction distance location
stac3 stac3 coding upstream 129423 28849141 ~ 28864783 (+)
r3hdm2 r3hdm2 coding upstream 146851 28770225 ~ 28847355 (+)
arhgap9 arhgap9 coding upstream 404716 28517631 ~ 28589490 (+)
ddit3 ddit3,LOC106582666 coding upstream 501894 28486708 ~ 28492312 (+)
dctn2 dctn2 coding upstream 540186 28429241 ~ 28454020 (+)
shmt2 shmt2,LOC103359782,LOC106515133 coding downstream 5399 29090843 ~ 29132063 (+)
h6pd h6pd coding downstream 159837 29245281 ~ 29259083 (+)
rbp7 rbp7,LOC107713528,LOC107666991,LOC107555975,LOC107708738 coding downstream 182262 29267706 ~ 29271449 (+)
c13h3orf67 NA coding downstream 474287 29559731 ~ 29609556 (+)
LOC103032776 NA coding downstream 534916 29620360 ~ 29630245 (+)
G114402 NA non-coding upstream 8567 28931924 ~ 28985639 (+)
G114405 NA non-coding upstream 16748 28976831 ~ 28977458 (+)
G114400 NA non-coding upstream 62610 28931350 ~ 28931596 (+)
G114399 NA non-coding upstream 67389 28926415 ~ 28926817 (+)
G114392 NA non-coding upstream 113351 28877249 ~ 28880855 (+)
G114433 NA non-coding downstream 97970 29183414 ~ 29260686 (+)
G114438 NA non-coding downstream 144763 29230207 ~ 29284778 (+)
G114439 tardbp,LOC108427558,LOC105025427 non-coding downstream 196014 29281458 ~ 29282414 (+)
G114474 NA non-coding downstream 372583 29458027 ~ 29557691 (+)
G114475 NA non-coding downstream 389402 29474846 ~ 29475567 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 1504684 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 1641762 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 3597223 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 3731985 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 3740076 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 122299 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 796927 29882371 ~ 29887978 (+)
G114698 NA other downstream 1040891 30126335 ~ 30129896 (+)
G114841 NA other downstream 1764865 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 2807841 31893285 ~ 31894351 (+)

Expression


Co-expression Network