arfrp1 (arfrp1)


Basic Information

Item Value
gene id arfrp1
gene name arfrp1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 28141928 ~ 28149421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253414.3
TGTAACGTCAGCAACTTCCTAGGACGTGTTTACAAGCTGTAGCTATGAAGCTGAAGATGAAGCAGGAACAGAGCGGTTAgcgagctaatgctaacaacacCATTAACCAGCCAGATACTGTAGAACAAGCGggtttaatctaaaatatttagTGTAGTTTAATTACCTGGCCCGTGTTCTTACAGCTGCTGCGGTCTGTACCCGGTAACCGACCCGGGGCTGTGTGTAGTTCTGCTGGAGGTAAGCTCTAGGCTgttagctaggctaggctaagctaggctaggctggGTTGAGTTGAGTGGTGGAGTGAAGGGATGTGAGCGGATAAAGCCGGGCAGAATAATGTACACTTTATTATCGGGTCTTTATAAGTACATGTTTCAGAAGGACGAGTACTGTATTCTGATTCTTGGACTCGACAATGCAGGAAAAACGaCATTTTTGGAACAGACAAAAACCAAATTCAGCAAGAACTACAAAGGAATGAGCCTTTCCAAAATTACAACCACCGTTGGGTTAAACATTGGCACCATCGATGTAGGAAAAGCACGGCTGATGTTTTGGGATCTTGGAGGACAAGAAGAATTGCAGTCCTTATGGGACAAAtaCTATGCAGAATCTCATGGAGTGATTTATGTTATTGACTCCACTGATGAAGAGCGATTGACTGAATCAAAGGATGCATTTGAGAAAATGATCAGTAGTGAGGCTCTTGAAGGGGTTCCTCTTCTTGTTCTTGCAAACAAGCAGGATGTAGAGAATTGTCTGTCTGTACCAGACATTAAGACTGCATTCAGTGACTGTGCCCCAAAAATTGGCAAACGGGACTGCCTGGTTCAGCCTTGTACTGCTCTTACAGGccaGGGGGTGAATGAAGGGATTGAGTGGATGGTGAAGTGCGTGATCCGGAACATACATCGCCCACCCAGACAGAAAGACATCACATAGACATACAGTGCTTGGATTCCCACCAGCCGTGCGTGACAAGCAGGTGCTGACGTTTGAACTGGACTAACATGTAGGTTGTGGCTACACATTAAAGGAAAGGCAGTGTACTTTATCAGAAGTATGCTGTGGTGTAGAGGCTCATCTCGGTGCATCAGCTGTCAGCAGACGTTGATGTTTGATCTTTGTGTATtaaaagactttttttattgattattttccCCATTTCTTCTCAATAAAGGACTTAATTTGGGTCTGAACTTCTCTTCAGTTATAAACATATTCACTGCTACAACTGATGTGAGTGTGATGCATCATCCACAATTCTGGACAAAAGTGTTTTGGttaatttactgtttataaTAGCTGAATTATTATCTACTGCTTTTTCTTCTTAATGAGTACCCTGATGATTGGTGAGGTGTGGTCTGACAGTGCAGGTTTTATCCatctaaatgtgtgtttgtttgtttgtttgtttttgactcataaaatatgtacatttttgtaaatgacTTCTAGAAATTGTGTAATAAATATTGAGGTGGAAAACAAGTTAA
>XM_022675626.1
ATGTAACGTCAGCAACTTCCTAGGACGTGTTTACAAGCTGTAGCTATGAAGCTGAAGATGAAGCAGGAACAGAGCGGTTAgcgagctaatgctaacaacacCATTAACCAGCCAGATACTGTAGAACAAGCGggtttaatctaaaatatttagTGTAGTTTAATTACCTGGCCCGTGTTCTTACAGCTGCTGCGGTCTGTACCCGGTAACCGACCCGGGGCTGTGTGTAGTTCTGCTGGAGaCATTTTTGGAACAGACAAAAACCAAATTCAGCAAGAACTACAAAGGAATGAGCCTTTCCAAAATTACAACCACCGTTGGGTTAAACATTGGCACCATCGATGTAGGAAAAGCACGGCTGATGTTTTGGGATCTTGGAGGACAAGAAGAATTGCAGTCCTTATGGGACAAAtaCTATGCAGAATCTCATGGAGTGATTTATGTTATTGACTCCACTGATGAAGAGCGATTGACTGAATCAAAGGATGCATTTGAGAAAATGATCAGTAGTGAGGCTCTTGAAGGGGTTCCTCTTCTTGTTCTTGCAAACAAGCAGGATGTAGAGAATTGTCTGTCTGTACCAGACATTAAGACTGCATTCAGTGACTGTGCCCCAAAAATTGGCAAACGGGACTGCCTGGTTCAGCCTTGTACTGCTCTTACAGGccaGGGGGTGAATGAAGGGATTGAGTGGATGGTGAAGTGCGTGATCCGGAACATACATCGCCCACCCAGACAGAAAGACATCACATAGACATACAGTGCTTGGATTCCCACCAGCCGTGCGTGACAAGCAGGTGCTGACGTTTGAACTGGACTAACATGTAGGTTGTGGCTACACATTAAAGGAAAGGCAGTGTACTTTATCAGAAGTATGCTGTGGTGTAGAGGCTCATCTCGGTGCATCAGCTGTCAGCAGACGTTGATGTTTGATCTTTGTGTATtaaaagactttttttattgattattttccCCATTTCTTCTCAATAAAGGACTTAATTTGGGTCTGAACTTCTCTTCAGTTATAAACATATTCACTGCTACAACTGATGTGAGTGTGATGCATCATCCACAATTCTGGACAAAAGTGTTTTGGttaatttactgtttataaTAGCTGAATTATTATCTACTGCTTTTTCTTCTTAATGAGTACCCTGATGATTGGTGAGGTGTGGTCTGACAGTGCAGGTTTTATCCatctaaatgtgtgtttgtttgtttgtttgtttttgactcataaaatatgtacatttttgtaaatgacTTCTAGAAATTGTGTAATAAATATTGAGGTGGAAAACAAGTTAA

Function

symbol description
arfrp1 Predicted to enable GTP binding activity. Predicted to be involved in Golgi to plasma membrane protein transport; intracellular protein transport; and protein localization to organelle. Predicted to be active in Golgi apparatus. Orthologous to human ARFRP1 (ADP ribosylation factor related protein 1).

NR:

description
PREDICTED: ADP-ribosylation factor-related protein 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K07952 ARFRP1; ADP-ribosylation factor related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253414.3 True 1505 mRNA 0.42 7 28141929 28149421
XM_022675626.1 False 1311 mRNA 0.41 7 28141928 28149421

Neighbor

gene id symbol gene type direction distance location
kcnq2 kcnq2,LOC100537363 coding upstream 14692 28041772 ~ 28127236 (+)
ralgapb ralgapb coding upstream 119109 27976381 ~ 28022819 (+)
snta1 snta1,LOC107681301,LOC107587638 coding upstream 501565 27576234 ~ 27640363 (+)
tfap2c tfap2c coding upstream 1796155 26323691 ~ 26345773 (+)
rtfdc1 rtfdc1 coding upstream 1822435 26271043 ~ 26319493 (+)
stmn3 stmn3 coding downstream 4686 28154107 ~ 28167135 (+)
LOC103025927 NA coding downstream 23153 28172574 ~ 28198880 (+)
sp7 sp7 coding downstream 75238 28224659 ~ 28229015 (+)
LOC103025620 LOC103025620,LOC108431823 coding downstream 122400 28271821 ~ 28292098 (+)
LOC111193756 NA coding downstream 192566 28341987 ~ 28349481 (+)
G114127 NA non-coding upstream 11636 28066690 ~ 28130292 (+)
G114110 NA non-coding upstream 135579 28005507 ~ 28006349 (+)
G114026 NA non-coding upstream 475953 27661540 ~ 27665975 (+)
G114020 NA non-coding upstream 495778 27642654 ~ 27646150 (+)
G114021 NA non-coding upstream 504388 27551064 ~ 27637540 (+)
G114154 NA non-coding downstream 22090 28171511 ~ 28171989 (+)
G114159 NA non-coding downstream 67786 28217207 ~ 28217435 (+)
G114168 NA non-coding downstream 148073 28297494 ~ 28297775 (+)
G114162 LOC108431801 non-coding downstream 163219 28312640 ~ 28316397 (+)
G114191 NA non-coding downstream 255788 28405209 ~ 28455339 (+)
LOC103037845 necab3,LOC108431835,LOC108271560,LOC107666033,LOC107553901,LOC107740282,LOC107587636,LOC107744391 other upstream 652406 27391014 ~ 27489522 (+)
G113979 snrpb,LOC101173217 other upstream 789484 27347449 ~ 27352444 (+)
ube2o ube2o other upstream 2744945 25342153 ~ 25396983 (+)
G113642 acox1 other upstream 2879707 25261386 ~ 25262221 (+)
LOC103030782 NA other upstream 2887798 25250384 ~ 25254130 (+)
LOC103044650 LOC108427558 other downstream 1058322 29207743 ~ 29281311 (+)
LOC111193669 NA other downstream 1732950 29882371 ~ 29887978 (+)
G114698 NA other downstream 1976914 30126335 ~ 30129896 (+)
G114841 NA other downstream 2700888 30850309 ~ 30880553 (+)
G115024 ngf,LOC103031633,LOC105909845 other downstream 3743864 31893285 ~ 31894351 (+)

Expression


Co-expression Network