LOC103039123 (LOC108441012,LOC105017220,LOC105897894)


Basic Information

Item Value
gene id LOC103039123
gene name LOC108441012,LOC105017220,LOC105897894
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36962226 ~ 36971698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254219.3
TTACCCTCAGGTGCGCTGAGAGGAAGTTGAGCAGAAGTTCAGCGGGGAAGCGGTGTTTGTCTCTTTTGATTCGGGAAACAGTTTTTATACTTTCTATTACAGTGCGGTGGAGAAATGTCTCCCCTGGGAGTTCAGCTGCTTGGCGCGTCCTGTACACGACTTTTACACCGCGGACCGGCCGCTCTCTAGCtgagctaacgctagctaacctaacctagctaagctagttagctaactaactaacgtcCGGTCTGAGAGGCAGCGCGTGTCACACTTTAACAGGCAGTAAACAGGGAGTGTCACTTAGTTCAGCCAGTCGACATGTTCTCAGTGCTCAGTCCCCGGCTTTAGCGGTCTAAGTaaccagctagctaacctagccggCTGCTGACGACTGAGTCCTGTTTAACGTCGTTAGCTGGCTAACGTTAGCTGGTCATGGAGCTGATGCTGGAGCTGTCGGTGCTGCAGACTTTTACTGATACTCGGAACCTGCTACAGTGAGGACAGAGTTGCAGAGTAAAAGTGAACAACATGAAATCTTTCGGCCCGCGGTCCTCATTCTACGTGGGCTTCTTGGTGGGCACATGCACCTTGTATGTGTTCCTTCGTCAGGTGTGGTTTGCTAAAAACTTCTCTTCCCAGCACCCTGAGGGCCTGGCTGATACGGCAGAGGAGATAAAATTGCTTGAAGCGGAACAAAAGAACTGGAAGAAAGAGAGATCAGCACTCTTCAACCTTAACCATCCGCACCACACAGGTGAAGACAGCACGGTAGCAGATGCACTCTATAAGCAGGTGCGCATTCTTTGTTGGGTGATGACTGGTCCCAACAACCTGCAGAAAAAAGCTCGTCATGTGAAAGCAACATGGAGTCGTCACTGCAACATAGTCGTATTTATGAGCTCAGTAGATGATCCTGACTTTCCTGCAGTGGGCCTTAATACAAAGGAGGGCAGAGACCAGCTCTACTGGAAAACAATCCGTGCTTTCCACTATGCGTTAGAAAAGCATGGAGAAGAAGCAGACTGGTTCCTTAAAGCCGATGATGACACTTATGTGGTAGTGGATAACCTGCGGTGGGTCTTGTCTAACCACTCCCCCGACGAGCCTGTTTATTTCGGCAGAAGGTTCAAACCCTACACTAAGCAGGGCTACATGAGTGGAGGTGCGGGTTATGTTCTAAGCAAAGAGGCTCTTAAGAGGTTTGTGGAAGGTTTCAGCACAAaggtgtgcacacacacatcctcagTGGAGGACCTTGCATTAGGGCAGTGTATGGAGAAGATGGGAGTACTGGCTGGAGATTCTAGAGACACGCTGCATAGAGAAACTTTTCATCCTTTTGTGCCAGAGCAACACCTCACCGGCAAATTCCCTAAGAGCTTCTGGTACTGGAACTACTGCTATTACCCTATTGTAGAGGGGCCCCAGTGTTGCTCAGACTTGGCAGTGTCTTTCCACTATGTGGATCCATCACACATGTACCTGTTGGAGTACTACACTTATCACTTGCGTGCCTTTGGCTACCGCTACCGCTATGAGCCCCCTTTGCCTACTGGCCTTCAGGACTCCAAGTCTTTAGACCAAGGGGTGGAACATCCACACGTCGACCAGAAACCAGAACCAGGACTTCAGGAAGTGGAACAGAAGGCTCCTGCTGTTGATGAAAAGCTATAGCACCCTTTTGTTTTTGCTCAAACTTCTTCTGactttgggacctcctggaatTTTGtgttgggtatttttttttttttgaaaggaCTAACTTTGTAATGTGCAAAAAATCTGCTTCTGAATCATTttgcagttgtgtgtgtgtgtgagagagaatttTGGGTTGTGCTTGTATATGACTGCCGTTACAAGACAGACAGCTGGTAAATGAAGACTTGCAGATTTATAGTGCCTCCCTGTGTGTGAGTACGTGTGTGGAGGGGAGGGGTGGCTTAAGAGTGTGTAGGCTTGTCTCTGATGCCTTAGTTTTGTATGCACATGCATCACTGACTAGATTTACTTCTGCCTAGACCAAACAAACAGCACTCAACCATATTCATTCCACTGGCTGGTGGAAGTCGATTTGCTGGCCTAAGCAACTTTGTTAATTTTCCAGCAAAGACGTATTAAGTGCAGATGGTGACAAGACACTCTTACAGATTCGTTAGACAAATGGTGAAGGCCTAATCTAGGAGTTATCTGAAGGTTTAGggcttttgttttttcttcaattTACAGTGGAGTCCAAAATTATTGAGACCACTAGTGAACATGTTCCtatttgttcatattttttccatagtttagctttaaaattaaattattatacacATTTAATGGAAaagattaacaaaataaaaatagattatttAACAAGTACTTAAGAATTTTGTGCCTTTTTCAGACGTTGTTTTGCTGTTCTGTCATGCGTAGTTCTATCCCACTTTGTTACAGCTTTTTTTGTACAAACGAATCAATTTGATTACAAATTTGGTTTTGTATTTACAAAGTGTTATCTCAACTTTATACAtttctcgtgttttttttttcaggattagAAAACTTTAGAATGTGATTTCACACTTTAGACCCCACAATTCACTTGTCTGATGTAGTATTGATATTTTTTCTGGATAAAACAGCCACAATTTTTGCACATTATGCAGACTTTAAAGTAAGTGACAAGTGACACATGCACATCTGCGTCAGCAGTGGGTGGAGTTTATAGttataatgtgtttgtttgtttgtgtatacatataaatgcacatacacacattatataatgcaatataataaaataaaatgtaagcaCAATCTGACAAAAAGAAATAGATTGGCTTTACATAACTAAGTTTAATCTATTAAGATATGTCTCAGACAGTTTCTAATGTCCATATTCTATTTACAGTTTGTGTCTGTACAGCTGTAAGGAAGCCTAATGCCACACATTCTCCTCTCCCATGTATGCCTCTGTTTTTGGCTGGGTGTGAATGAATCAGAAAACCCACTATTGTCCTGAATGGTCTCATCAGTCACTTTACTTGCTGATGTCTAATTTAACATGTGATGTTTGAATTTAATAATGTGGGGTTTCTTTACATCTCTTTTAGAACCCAAATGTGTTGTGTGCTCTCCACTGCTTTATGCTAACAGCACTGTTCATCACACAGACATTTTGATATCCTATATTATCTTCTGTcctgcttctttcttttttcctgccACATGGAATTGCTTAGTGAAAGCATATATGATTGCAAACCTGGCCTGAAAGTCAGGCTGAGTTTTTTTATACAGTGCTGGATAATGCTCTACAGCCCTGGATCTGTGGTTGAGTGATTCAGAGCTGTAGAGGCTGTTCTGTTTTGCATACTGTGAGTACTGCAGCTCGTGCCTTTTACACCTCAACCCATTTACGCACCTTActgttattgtttgtttgacAGTTGGCAATATTAGAAGAAAAGTTAACATAGGAGTTTCAGATGGTTCTTTTTCCAGATACCAAACAAGCACCTTTCCAAGACATCGTATAAATATTAATCTGAAATAATGGTTGCCTTTCACCTCACCTCTTAACTTTGATTGTCTGAAAGTTGTTTGTATCTGCTCATCCACACCCATATCAGAGGCGTTGTGCcaattctgtttctctgtccttcaCAACCGTTCAGTCAGCCAAACCAGTTGaaggaaaaataagagtttgCTGAGTGATTGGAAATGACTGAAGTCTACACTGTTACTGCTCTGTCAGAGGCAATAATAGTTCTGGCAGAGAAGAGATTAATGGAAGGTTTTTGTCTGAtgcttttttccccttttacTCAGGCAGCTTAtatcatttgttcattttaccATCATTGCACAGTTACTTACatgaaatgtgttgtaattcTGAAACCACTAAAGTCCTGTGAAATAAAGTAGTGGGTCTAATGCTGAATTTAGTTTATCTTGGATGTCTGAGGTGGAAAACAGAAattcattgttagcattgtcgaATGTTAGCATTGCTAGTGTTAACAGTTGATAACGCATTGTGCTTTATTTTGCCCATCCAAACAGTATGGAAACGTGTCCACAGTTAGAAGTTGggcagtactgtgtgtaaggTTGATTTAATGATTCAAAAATAGGAGAAGTGCTAATAAACCAGTATAATACTGCTGCTTTTACTGCTGTTGATCTGTTggggcagccatcttggattatGAACTCCGGGTCTGTGAGGCTCTTCCAATGTTCGTAGTAGGAAATCCTACCGGATGGATCATTTCAGTTAAAATTTCCTGCTTGGAACTAGTAAATTTCAACATCCAAGAGCACATAATTAGCTGTTATGTTTAATCAGAGGAGACTTTGAACTTGAAGTGATTGTATATCAACATAAACCAaatctgtttgtgtttattatattttagcatGGGAATATTTAGTGATTGGTCgtggtttttatttgttttttattcctttattcataGGATTGGGAGATTTTTGTGTAGGATTTAACACTATACATAAAGTGAGTGAGAGGGTCAGTATATGAAGATTGTTTGTGTGACTACGTATAAAAAgtctggattattttttttataatttgtaaCAAATTATGTAGAAATATATAGATTTGGTTCCTAAACTTGTCCACCCCCCTTCTGTCAAATAGTGCTGGAGGTGACAGTTCATTTCATGCACAGATAAATATTCAAAGGTTATGTAACATCAAAGGGGTGAATCTTCATGGCCTTTTATCTAGTAGTGTTTAATGTTACAGGTGCAGCAAAGTGTTCTGATTGATGCTGGCAGCCTTTTATgggttgtgtctgtgtgtgtatgtatgtgtgtgtgtgttaagcgATCCTCAACCCTTATCAGCATAACGAAAAGGAAATTACAGTGATATGTCAGAAGATTCCTGTTACTCTGATAATAAGTTTAAGGAATTATGAGATCCACAGTGCTTCTTATCTCACACCTCCTTTTCACATTCTGAATTATCATATATGTGTTTCTGCTCTCTAATCCAAAGGTACAGAGGTACCCTTCCTCTCTGATTTGTGTGTAAAAGGGAATTATGTACAGTCATTTCACAGCAGTCTTTATTTGAAGAGGAATGCCTGGTGTGAACAGTTCatgaaagaaaacaaacatgaatATCAGAGAGGTACAGTGACCAGCATACTGAATAAAgacttattttactgtaaa

Function

NR:

description
PREDICTED: glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001822 kidney development biological_process
GO:0016266 O-glycan processing biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016263 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity molecular_function

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254219.3 True 5211 mRNA 0.41 4 36962226 36971698

Neighbor

gene id symbol gene type direction distance location
os9 os9,LOC107711069,LOC107582707,LOC107673576,LOC107733587,LOC107585136 coding upstream 659 36947965 ~ 36961567 (+)
LOC103040047 NA coding upstream 42683 36904618 ~ 36919543 (+)
LOC103040875 krt4,LOC108440969,LOC107667388,LOC106565226,LOC107711067 coding upstream 79821 36876648 ~ 36882405 (+)
LOC103041493 NA coding upstream 106264 36849647 ~ 36855962 (+)
LOC103042615 scn8ab,LOC108440919,LOC100304602 coding upstream 143133 36747556 ~ 36819093 (+)
apof NA coding downstream 14234 36985932 ~ 36990049 (+)
LOC103021407 LOC108441035,LOC108272207 coding downstream 22284 36993982 ~ 37010190 (+)
LOC103046153 eif4b,LOC108441049 coding downstream 69668 37041366 ~ 37050408 (+)
LOC103046872 NA coding downstream 85743 37057441 ~ 37088492 (+)
LOC103044613 NA coding downstream 159876 37131574 ~ 37159320 (+)
G116378 NA non-coding upstream 52577 36909203 ~ 36909649 (+)
G116360 NA non-coding upstream 118988 36840841 ~ 36843238 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding upstream 127704 36833489 ~ 36834522 (+)
G116359 NA non-coding upstream 130650 36823464 ~ 36831576 (+)
G116466 NA non-coding downstream 39755 37011453 ~ 37014185 (+)
G116511 NA non-coding downstream 126556 37098254 ~ 37098533 (+)
G116507 NA non-coding downstream 149992 37121690 ~ 37124435 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding downstream 219372 37191070 ~ 37199094 (+)
G116539 NA non-coding downstream 280509 37252207 ~ 37252770 (+)
LOC103044253 LOC108440873 other upstream 248342 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 602449 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 974166 35982119 ~ 35988060 (+)
tomm6 NA other upstream 994348 35958543 ~ 35967878 (+)
G115931 NA other upstream 1227867 35730379 ~ 35734359 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 128316 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 553153 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1418579 38390277 ~ 38394530 (+)
G116997 NA other downstream 2387173 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3827773 40799471 ~ 40808545 (+)

Expression


Co-expression Network