b4galnt1 (b4galnt1,b4galnt1b,LOC107673615,LOC107667298,LOC107711068)


Basic Information

Item Value
gene id b4galnt1
gene name b4galnt1,b4galnt1b,LOC107673615,LOC107667298,LOC107711068
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36923290 ~ 36940623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254221.3
TGGCGGAGGGGATGGCTATTAGCAGCGCTGCAGAGGCGCAGTAACTCCGTTGGAATTAGCCTCCGCCAGAGGGGTAGCTTCACCGTCTACATCCATCTCTCCTTCCATCCCGGTTTTATCAGTGGTGGATGTCATGCCACTGGATTTTCTGCCCCCATCAGCAGCGGGCAGTGATTCAATGCAGGGAATTCCGAGCTAATGATTCAGAGGACATTGTTGAGGATTCCAGCGCTGGAAAGATGGTGATAGTCCTCCACCACCGCCACTCACTCCTGTCAACCATGTCTACATTCCACCGATCATCACTGCCATGGATTTTTGGGAGCAACAATGGCATCCTACACCTCGCATACTGACTGGATAGAtTTGTAGGATGCGTTCTCTGCGTAAGACGGTGTTGTTAGCACTGGTAGCGTCTGTGGTCCTGTTTCTGGCAGTGCTACACACATGGCCCACTCGGGCCTACAGCACCGTGGATGTCCGTCAGAGACCCGGACCTGGAGTGGAACGGCTGTTGGAGGAGAGACTCCCAGAGCCGGACCCCAGTGCTAGCACCGTCCCGTACCGTGTGAGGGAGAGTGTCGCCGGGCTTCTGGCACgtaatggctgtgtgtgtgagggtgagagAGGAGGTGTGAACTTGCCGTTTGCTCAACTGCTGTTCCCACGAGTGTCTGCTCACCCCCTGCACACAGCCTTCCAGCCCTCCCAGCTGGAGGAGATGAAGAGACGGCGAGCCAAAGAGTATCAGGGCTTCCAAATGAGGTCACAAACCCCTGCTGATTTTCTGATTGTAGCTGAAGCTAATAGCCCACTGCAATACCCAACACAGGGTGTGGAGGTGCGGCCACTCAAGACGATCCTTATACCAGGCTTGGCCTTAAAAGACCTGCCCAGAGACGTTTACACTTTGAATTTCTCGGCATCTCTGGGCACGTTTAATGTGGCAGCAGAAGTGGACGGGGTAAAGATCAGAGGTGATGGAGAGATGCACATGAGCCTAAGCAGCTGCCTCTTGCCCAACCTGAACCGCCAGCTTCAGTTCATCACTTATACGAACACACTGTTCCACCCcagcactgcagacacagTGCAATTAGAGACCGAAGGACATCAAGCTCTTTTCACCATCAAAATCCGTCATGGAGTGACACCTAAGCTCTACAACACCGGCTCAGACGGAGATAAAGAATACAATATCAGCGCTCTGGTCACCATAGCCACTAAAACATTTCTGCGGTATAACAAGCTCCAGGACCTGATTGACAGCATACGAAGATACTACCCAACAGTCACCATAGTAATAGCGGATGACAGCGAAAATCCGAAAATGGTGTCCGGCCCAAATATAGAGCACTACATCATGCCGTTTGGAAAGGGTTGGTTTGCAGGCCGTAATCTAGCTGTGTCGCAGGTCACCACTAAGTACGTTCTATGGGTGGATGATGACTTTATCTTCACTGCCAACACCAAACTAGAGAAACTTGTGGATGTTCTGGAGAAGACCACACTTGACTTGgtgggAGGTGCGGTGCGTGAGGCTACAGGCTACACTGCCACCTACAGGCAGACTATCTCTATAGAGGCAGGAGAAGAGGATGGGGACTGTCTGCACATGAGACGTGGGTTCCATCACGTCATCCAAGGCTTCCCCAACTGCGTGGTCACTGATGGAGTCATTAACTTCTTTCTGGCCCGGACAGATAAGGTGCAGCAGGTGGGCTTTGACCCACGGTTAGCCCGCGTCGCCCACCTGGAGTTTTTCATCGATGGACTGGGTTCTCTTCACGTCGGTTCGTGTGATGATGTCATTGTGAACCATGCCACCAAGATCAAGCTTCCGTGGGGTCAGTCGGAGAGCGACAAAACCTACGCCAAGTTCCGCTACCCCCCGGCATCTTCTGACGCTACACATACCAAAAATGGCCTCCTGTACTTCAAGAACCGCTTCCAGTGTCTCACACACAACTGAACACACTCTTCCACTGCGCCCTTGTTCCCTCTTTTTGTCTTCCTTTCTGAAAAGACCTCTTTTTCTGGAGTAGCTAAAGGGGATCTTTAAGGGGACCCgggaatgtgtgtatgtgtgtgtgtgtgtgtgtgtatgtgaatgcatgtgtgtgtgaatgcctatgtgtgtgtgtgtgtgtgtatgtgtgtctacAGTCTGCTAAGTTTTCCCTTTCCTTCATTTTAATGTGGGAAGGTTCAAAATAGTCCCCTCCTTTTGGAGGGCCCCAAAGTTGATTTTATTTTGACTGACAGAGGATAGATAGCAGctgattgttgtttttttgttgttgttgttgcttttttaaTAACTGATGGATGAAGATCATATTTTTTATGTCCTGATCTGCTCAGTTTGGATTTTTCAAGAGAAGTCATTCCCTGTCTGAAGCAGCTCAGTCACTTTGATTTTTCTTCTGCCAGTCACAGATGattctgtcctgtgtttttaagGGGAAATTAGGGTTTGTCCCTCATGAGAGTTTGACGTGTGGACAATGGATGCTTTTTTAAGTGCAGAAAGGGAGATATGGGCATTGACGGACCGCCACAAACGAACCACTGACTCAGAATGAGCTCCTTTtaagagtgtagagtgtgtatgagtatgtgtgcttctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcaggCATTTATGTTTGAGGGCCTTCTCTCTGTATGTTTGCACTAATTCAAATGGACTAATTTGAGAGATTGGACCCTGAGCTTGTCTGGAGAGAAAAAACCCATATAAACCAGCTTAGACTGCAGATCCCACccattctttttctctctaccactctctcaatatttctttctttctttctctctctctctctctctcttcaaacACTCTTAGATGCAGATGGAGGATGTGTTAAAGTGAACTATCTCAACTTTGATGTTTTAAATCTACATTGCCAAAAGCCTCAGTGCTGTCCTCGTTCAGTTCCTTGGttcctttttatttgtttttatttatttatttatttatttatttgtctgtctCAAATTGACGGGCATCTTATTCAGAATGCAGCCCATTTCTCATATTTTTCTTCTGAACTAGGCTGTAGTCTCTTCTCTTGTGTAACGGTGTGATACCCTGCTTGTCCTGGGGTTTAATTAAACTGGGTCTAGTCCGGGGCTGTTTTTTA

Function

symbol description
b4galnt1b Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in ganglioside biosynthetic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 26. Orthologous to human B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1).
b4galnt1 Enables (N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase activity. Involved in ganglioside biosynthetic process. Predicted to be located in Golgi membrane. Implicated in hereditary spastic paraplegia 26.

NR:

description
PREDICTED: beta-1,4 N-acetylgalactosaminyltransferase 1

GO:

id name namespace
GO:0030259 lipid glycosylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00725 B4GALNT1, GALGT; (N-Acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254221.3 True 3187 mRNA 0.48 12 36923290 36940623

Neighbor

gene id symbol gene type direction distance location
LOC103040574 LOC108440011 coding downstream 21142 36895859 ~ 36902148 (-)
LOC103041181 NA coding downstream 31038 36882810 ~ 36892252 (-)
LOC103041794 LOC108440955,LOC108272218 coding downstream 84247 36834070 ~ 36839043 (-)
LOC103042096 LOC103042096,LOC108440962 coding downstream 92849 36825285 ~ 36830441 (-)
LOC107197751 LOC108439999,LOC108440912,LOC107580767 coding downstream 181244 36737746 ~ 36742046 (-)
gpr84 NA coding upstream 71817 37012440 ~ 37016661 (-)
LOC103047373 NA coding upstream 91269 37031892 ~ 37037375 (-)
trnaq-uug_2 NA coding upstream 152376 37092999 ~ 37093070 (-)
LOC103044934 slc48a1,LOC103044934,LOC108441111,LOC107733581,LOC107585148,LOC107685336,LOC107711080 coding upstream 219285 37159908 ~ 37166924 (-)
LOC103043928 LOC107100807 coding upstream 227558 37168181 ~ 37179555 (-)
G116426 krt5,LOC108440946,LOC108440969,LOC106565226,LOC103466878 non-coding downstream 67328 36854860 ~ 36855962 (-)
G116434 NA non-coding downstream 102476 36799842 ~ 36820814 (-)
G116407 NA non-coding downstream 195051 36727991 ~ 36728239 (-)
G116398 LOC108440873,LOC103043543,LOC108440897,LOC107667378,LOC107711060,LOC108271751,LOC107582700 non-coding downstream 201397 36710256 ~ 36721893 (-)
G116399 LOC108440873 non-coding downstream 215117 36707769 ~ 36708173 (-)
G116475 os9,LOC107711069 non-coding upstream 13167 36953790 ~ 37010174 (-)
G116483 NA non-coding upstream 23909 36964532 ~ 36971714 (-)
G116492 NA non-coding upstream 56271 36996894 ~ 36997753 (-)
G116495 NA non-coding upstream 63673 37004296 ~ 37005934 (-)
LOC111193780 NA non-coding upstream 85455 37026078 ~ 37027169 (-)
LOC103028059 ghrl other downstream 861006 36056563 ~ 36062284 (-)
LOC103031109 uqcc2,cf125,LOC108440614,LOC107580205,LOC107667355,LOC106565356 other downstream 964472 35955109 ~ 35958818 (-)
LOC103034399 LOC108440553,LOC108271943,LOC107584416,LOC107721179 other downstream 1042999 35869803 ~ 35880291 (-)
G116068 myhz2,LOC108440470,LOC108443907,LOC107385141 other downstream 1107968 35813621 ~ 35815322 (-)
LOC103033855 oxtr,LOC107749620 other downstream 2072138 34825836 ~ 34851152 (-)
LOC103023810 NA other upstream 81552 37022175 ~ 37031363 (-)
G116581 eif4b,LOC108441049 other upstream 100738 37041361 ~ 37045788 (-)
tubgcp5 tubgcp5,chst7,LOC107585157,LOC107582726,LOC107673606,LOC107753407,LOC107582727 other upstream 1292851 38233474 ~ 38248624 (-)
G116805 plcxd1,LOC103035541,LOC105895009,LOC107711026,LOC107673474,LOC108441321,LOC107585164 other upstream 1440647 38381270 ~ 38384598 (-)
negr1 negr1,LOC107673552,LOC107711106,LOC107726517,LOC107582736,LOC107585169,LOC107685309 other upstream 1690014 38630637 ~ 38899446 (-)

Expression


Co-expression Network