LOC103040875 (krt4,LOC108440969,LOC107667388,LOC106565226,LOC107711067)


Basic Information

Item Value
gene id LOC103040875
gene name krt4,LOC108440969,LOC107667388,LOC106565226,LOC107711067
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36876648 ~ 36882405 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254224.3
AGCACTGGAGAAGCACACAGAGGGACTTTGACTCTCCTTTGTGAGTGAcctcctccgcctcctcctccactCTGCTCCACTCTCTTGCtcttgcttcttcttcttcttgtctgaagaccagaaaaaaaaacaacagaaaccaTGTCCGTCAGAAACGTAAGCTACAGCATTGGTGGCAGCAGTGGTTCCGTCAGGAAGAGCTACTCCAGCCACTCTGCCTATGGCGCTCCAGGAGGCTCCAGCCGGATCAGCAGTGTCCGTCGCTCTGGTGTAGGCGCTGGCCCTGGCTTCAGTGGCGGTGCCACCTacagcttcagcagcagcagcatcggTGGAGGGTATGGAGGAGGCCTTGGGTCAAGCATTGGTGGAGGCATTGGCGGAGGCTATGGTGGAGGCTTCGTCCCTGCACCCATCACAGCTGTGACAGTCAACCAGAGCCTCCTGGCTCCCCTCAACCTGGAGATCGACCCCACCATCCAGGCTGTGCGCACACAAGAGAAAGAGCAGATCAAGACCCTCAACAACCGCTTCGCCTCCTTCATTGATAAGGTGCGTTTCCTGGAGCAGCAGAACAAAATGCTGGAGACCAAGTGGAGTCTCCTGCAGGAGCAGACCACCACCCGCTCCAACATTGACGCCATGTTCGAGGCCTACATTGCTAACCTGCGCAGACAGCTGGACGGACTGGGCAATGAGAAGATGAAGCTGGAGGGAGAGCTGAAGAACATGCAGGGTCTGGTTGAGGACTTCAAGAGGAAGTATGAGGATGAAATCaacaaacgtgctgctgcagaAAACGAATTTGTCCTGCTGAAGAAGgATGTTGACGCTGCCTACATGAACAAGATTGAGCTTGAGGCTAAGGTTGATGCCCTTCAGGATGAGATCAACTTCCTCAGGGCAGTCTATGAGGCTGAGCTGCGTGAGCTGCAGTCCCAGATCAAGGACACATCAGTTATTGTGGAGATGGACAACAGCAGGAACCTGGACATGGACTCCATTGTGGCTGAAGTGCGTGCTCAGTATGAGGACATCGCCAACCGCAGCCGTGCTGAGGCCGAGACCTGGTACAAACAGAAGTTCGAGGAGATGCAGACCTCAGCTGGTCAGTACGGTGACGACCTGCGCTCAACCAAGGCTGAGATTGCTGAGCTGAACAGAATGATTGCCCGCCTTCAGAACGAGATTGAATCAGTCAAGGGACAGCGTGCTAACCTTGAGGCCCAGATCGCTGAGGCAGAGGAGCGTGGTGAGCTGGCAGTGAAGGATGCTAAACTCCGCATTAAGGACTTGGAAGATGCTCTCCAGAGGGCTAAGCAAGACATGGCCCGCCAGGTGCGTGAGTACCAGGAGCTAATGAACGTCAAGCTGGCCCTGGACATTGAGATCGCCACCTACAGGAAACTGCTGGAAGGAGAAGAGAACAGAATCTCTGCTGGAGGATCCTCTGCAACCATCCACGTGCAGCAGACCTCTGGAGGTGGTGGTTTCTCCTCTGCCAGCTCTGGATTTGGCTATGGTGGTGGAATCGGAGGTGGAATCGGTGGTGGAATCGGAGGTGGAATGGGCTATGGTGGAGGCTCAACCATCACCAAATCCTCCGTAACATCTGTCAACCGTTCCAGACACTTCTAAGCAGATGCATCCTGATTCCCTCACCTACCAAGCTGCACCTACACCTACATGACCCTTTCAACTTAGACCAACTCTACGGTGCTATTAGTACTAACTAGCAGCCCCTTTTAGAAGTATGCAACCAGGAGAGGCTCTACTGTCTCTGACTACAGGCTTGTGTTTGATTGTCCTAGTTTAAATGAACATGAGGAGCTTTATTGGTTTGATATCAATTGTCTGTAATGTGTGTCTCCTCCTTAGCCAACCAGGAAGCAAAGctatatgtactgtatgcaGGTCCAGCAGATTCCTCCCTCTCACTTTTCATTCAACTGAAAGCTTAACATTTAAACCAGGAAGAATGTAAAAGGGAAATGTTCGGTCCCAACTTCTGACTTTATTTTCTGCACTGACATGTTTGGGGAAAGGAAGACTAGATGGAGATTAAAGTTGACAAGACAGAGTATCTACATTTAAACCACTGAAGGAAAACATGTTTCATTATTATGTCCAGAAGCAGTGCCATACTAACACTAGATTAGGAGTTTTCAGTACAGGATCCAATAGGCTCGTCTCAGTAGAAGTTATTTTGCTATCCCACATCTGCTCTCAGCAAGACGTAACTGTAACAAAGACTGGTCAGCATGGGCCAGTGACCTTACACTGTGAGCAGATCTGTTATGGCAAAAAAGCTGCTACATGTTGGGCTTGTGAAGGTGGTCCTCTCTAGACTGGTTACAGTGGCACCTTCTGATTTGGCAGCTGCAATTTCCATTACCTTTGTTCTCCATCCCTCCCCTGTGCTCACATACACCAGAGCAGAATTAAGGGTATCGCTCCCTTTCTCTCAGGCTGTGCCATACTTGACTTTCTActtcatgaaaaaaaagagaaaactgaTTTTATGTGAGGACCGGATTTATTGATGTCAATTGACTTTGTAACAACCTAAAACctgaacaaaataaatctgagaTCTATAAA

Function

symbol description
krt4 Predicted to be located in keratin filament. Is expressed in several structures, including EVL; ectoderm; endocrine system; integument; and pharynx. Human ortholog(s) of this gene implicated in several diseases, including Meesmann corneal dystrophy 2; epidermolytic hyperkeratosis; hereditary mucosal leukokeratosis; ichthyosis (multiple); and palmoplantar keratosis (multiple). Orthologous to several human genes including KRT8 (keratin 8).

NR:

description
PREDICTED: intermediate filament protein ON3-like isoform X2

GO:

id name namespace
GO:0045095 keratin filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07605 KRT2; type II keratin, basic

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254224.3 True 2601 mRNA 0.50 9 36876648 36882405

Neighbor

gene id symbol gene type direction distance location
LOC103041493 NA coding upstream 20686 36849647 ~ 36855962 (+)
LOC103042615 scn8ab,LOC108440919,LOC100304602 coding upstream 57555 36747556 ~ 36819093 (+)
LOC103043543 LOC103043543,LOC108440897,LOC108271751,LOC107582700,LOC107667378 coding upstream 154751 36714888 ~ 36721897 (+)
LOC103045375 atf7b,LOC108440868,LOC108271749,LOC107740570,LOC107711055,LOC107585125,LOC107582698,LOC107667392 coding upstream 221808 36643900 ~ 36654840 (+)
LOC103045881 NA coding upstream 234184 36625035 ~ 36642464 (+)
LOC103040047 NA coding downstream 22213 36904618 ~ 36919543 (+)
os9 os9,LOC107711069,LOC107582707,LOC107673576,LOC107733587,LOC107585136 coding downstream 65560 36947965 ~ 36961567 (+)
LOC103039123 LOC108441012,LOC105017220,LOC105897894 coding downstream 79821 36962226 ~ 36971698 (+)
apof NA coding downstream 103527 36985932 ~ 36990049 (+)
LOC103021407 LOC108441035,LOC108272207 coding downstream 111577 36993982 ~ 37010190 (+)
G116360 NA non-coding upstream 33410 36840841 ~ 36843238 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding upstream 42126 36833489 ~ 36834522 (+)
G116359 NA non-coding upstream 45072 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding upstream 48780 36825294 ~ 36827868 (+)
G116349 LOC108440912,LOC108439999 non-coding upstream 134634 36732148 ~ 36742014 (+)
G116378 NA non-coding downstream 26798 36909203 ~ 36909649 (+)
G116466 NA non-coding downstream 129048 37011453 ~ 37014185 (+)
G116511 NA non-coding downstream 215849 37098254 ~ 37098533 (+)
G116507 NA non-coding downstream 239285 37121690 ~ 37124435 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding downstream 308665 37191070 ~ 37199094 (+)
LOC103044253 LOC108440873 other upstream 162764 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 516871 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 888588 35982119 ~ 35988060 (+)
tomm6 NA other upstream 908770 35958543 ~ 35967878 (+)
G115931 NA other upstream 1142289 35730379 ~ 35734359 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 217609 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 642446 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1507872 38390277 ~ 38394530 (+)
G116997 NA other downstream 2476466 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3917066 40799471 ~ 40808545 (+)

Expression


Co-expression Network