LOC103041493


Basic Information

Item Value
gene id LOC103041493
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36849647 ~ 36855962 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254226.3
TGGGAgatttcccctctctctccatctgtctgaTTATCCTCCTGTGAGGACCCTTCATACCTACATTCCGCTTATCTGCTTCTCTGCTCCTTCACATCTGGTGTTTGACGATGTCCAGCGTGAAGAAAACGACAAAGACTTTCTCATCAGCCTCTGCAAGCCACTATGGCTTCAGAGATAGCACCCCCTTCAACAAGACCTACACCGAGAGCTACAGCTACTTCAGAGGGGCTGGTTTGGGTTCTGGTGCCAGCGTGACCCTTCCAGTAACAGCGGTCACCGTCAACAAAAGCCTCCTGGCTCCCTTGAACCTGGAGATTGACCCTGAGATCCAGGCAGTCAGAATTCATGAGAAGGAACAGATTAAGACCCTCAACAATCGCTTTGCATCCTTCATTGACAAGGTGCGTTTCCTGGAGCAGCAGAATAAAATGCTAGAGACCAAATGGAGTCTCCTGCAGGAAAAGACCACCAGCCGCTCCAACGTTGACGGCTTATTTGAGGTCTACATCTCCAACCTGCGCAGACAGCTGGATGGCCTGGGAAGTCAGAAACTGCGTCTGGAGTCTGAACTGAACAACATGCAGGGCTTGGTGGAGGACTTCAAACATAAGTACGAAGAAGAGATCAACAAACGCAACGATTGTGAGAACAACTTTGTGCTCATCAAAAAGGATGCTGATGGGGCATTCATAACGAAGGTAGAGCTGGAGGCTACACTTGATGGCCTGCTTGATGAGATTCAGTTCTTAAGACAGATCTATGAACAGGAGCTGCATGAGCTACAGTCTCAGGTCAAGGACACATCCGTGATTGTGGAAATGGACAACAGCAGGAACCTGGATATGGATTCCATTGTGGCTGACGTTCGCGCTCAATATGAAGAAATTGCAAACCGCAACCGAGCTGAAGCAGAGAACTGGTACAAACTGAAGTATGAAGAGCTACAAGTGTCAGTCACTAAATATGGTGACAACCTGAAAAGCACCAAAGCTGAGATCGCTGAACATACACGCAAAATCCAGCGTGTGCAGTCTGAGATTGATGCTGTCAAGGGACTGCGTTCTAATCAGGAGGCTCAGATCACAGAGGCAGAGGAGCGGGGAGAGGTCGCTGTGAGAGATGCTAGGCTTCGTGTTAAGGACCTGGAGGACGCCCTCCAGAGGGCGAAGCATGACATGGCCCGGCAGGTGCGCGAGTACCAGTCACTAATGAACATCAAACTGGCTCTGGACATCGAGATCGCCACCTACAGGAAACTGCTGGAGGGAGAAGAGAGCAGGTTGGTACGTGGAGTCCAGGCCGTCAGTATCTCCAGACAGACCTCATACCAACCCCACCTGCTAGAAAGCAGCATCGTCTCAGTCCACGGTGCCGATGCTCGTCCTCGGCTTGCTGTTTGCGACTTTGGTACTACTAACTACACCAGTGCCAGCACCATCACCCAAACCAAGAAGACCATCATTGCATCACAGGAGACCCGCGCACTGGAGGTGAAGGGAGATGCTGTGGATAAACTGGAGGTTGCTGAGTAGTGATCTCATTCAGCCTTTTAGAAACCTTGGTTGATGAAATCATTTGGTGCTTGCAAATATTATTTTCCATATACAATCTTATAAAAGTAGTGTAGTATAACCCCACATGATTCCCTACATACTATTCCATTTGTTATAAGTGATTTCTTTGataattatactgtatacttAAAATAACCCTTATGCAGTTTTCACATAGGTTCTGACATTCACCAGTGTTTTCTTATTTGTGATACAAATACAATGGAAGACATCAAAATAAGAGCATAACAATTAGCAATTTAAACAATCCATAGGAAGATTCTGGTGAATTGAGgccaattttttgtttttgcatgttCTGGCTTAAAATATGTGAAAGCCTGTTATAATGAACCACAACTTGTTTCCATTATAGTGTCCAACAATAAAGTTATCCCTAAAAACATA

Function

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0007601 visual perception biological_process
GO:0045095 keratin filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254226.3 True 1964 mRNA 0.46 9 36849647 36855962

Neighbor

gene id symbol gene type direction distance location
LOC103042615 scn8ab,LOC108440919,LOC100304602 coding upstream 30554 36747556 ~ 36819093 (+)
LOC103043543 LOC103043543,LOC108440897,LOC108271751,LOC107582700,LOC107667378 coding upstream 127750 36714888 ~ 36721897 (+)
LOC103045375 atf7b,LOC108440868,LOC108271749,LOC107740570,LOC107711055,LOC107585125,LOC107582698,LOC107667392 coding upstream 194807 36643900 ~ 36654840 (+)
LOC103045881 NA coding upstream 207183 36625035 ~ 36642464 (+)
pfdn5 pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318 coding upstream 226636 36617376 ~ 36623011 (+)
LOC103040875 krt4,LOC108440969,LOC107667388,LOC106565226,LOC107711067 coding downstream 20686 36876648 ~ 36882405 (+)
LOC103040047 NA coding downstream 48656 36904618 ~ 36919543 (+)
os9 os9,LOC107711069,LOC107582707,LOC107673576,LOC107733587,LOC107585136 coding downstream 92003 36947965 ~ 36961567 (+)
LOC103039123 LOC108441012,LOC105017220,LOC105897894 coding downstream 106264 36962226 ~ 36971698 (+)
apof NA coding downstream 129970 36985932 ~ 36990049 (+)
G116360 NA non-coding upstream 6409 36840841 ~ 36843238 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding upstream 15125 36833489 ~ 36834522 (+)
G116359 NA non-coding upstream 18071 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding upstream 21779 36825294 ~ 36827868 (+)
G116349 LOC108440912,LOC108439999 non-coding upstream 107633 36732148 ~ 36742014 (+)
G116378 NA non-coding downstream 53241 36909203 ~ 36909649 (+)
G116466 NA non-coding downstream 155491 37011453 ~ 37014185 (+)
G116511 NA non-coding downstream 242292 37098254 ~ 37098533 (+)
G116507 NA non-coding downstream 265728 37121690 ~ 37124435 (+)
G116532 LOC108441132,LOC107711082,LOC107585147,LOC107673595,LOC107685285,LOC107733606,LOC107582800 non-coding downstream 335108 37191070 ~ 37199094 (+)
LOC103044253 LOC108440873 other upstream 135763 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 489870 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 861587 35982119 ~ 35988060 (+)
tomm6 NA other upstream 881769 35958543 ~ 35967878 (+)
G115931 NA other upstream 1115288 35730379 ~ 35734359 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 244052 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 668889 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1534315 38390277 ~ 38394530 (+)
G116997 NA other downstream 2502909 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 3943509 40799471 ~ 40808545 (+)

Expression


Co-expression Network