LOC103043543 (LOC103043543,LOC108440897,LOC108271751,LOC107582700,LOC107667378)



Basic Information


Item Value
gene id LOC103043543
gene name LOC103043543,LOC108440897,LOC108271751,LOC107582700,LOC107667378
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36714888 ~ 36721897 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_007254233.3
CGAacgccaaaaaaaacaaaaaaacaagctagcgttttttttttcaatggaaACCGCCCTGATTTGTTTATAACGTTTACCGGCATCTTAACTGTTAAAGTTCATTAACGAGTGATCACGGTTCTCCCGCGGCGGGTTGGAGAAGAAGATAAAGCGGTCAGAAGtggtgGCAATGGAAGAGGTTCACCAGAACAGCACTAATGGCACTGAGTCACAAACTGTGACCATCCCTACAACTCTTACAGCTTCTCAATTATCACAGATAACCCAGATGTCTCTTGGAGGGTCACCAGTCACTGTGGTGCAACTACCTGGTGGTCAGATTCAAGTACAAGGAGTGATCCAATCTGCCCAGTCATCAGTTATTCAGTCTCCACCAGCACAAATACAGGGTCATCAGTCTGATAGTGACGATTCTCAGGACTCCTCAGACAGTGGATCTTCTAACCAGAAAACGAGGGAAATTCTAGCGCGGCGCCCTTCTTACAGGAAGATTTTGAACGACCTCTCAGCAGAAGAGATGGTGAATCGAAatgaaggagaggaggagatcTCGGCCTCATCCGCAATGACAACGGTGTCTCTACCTACGCCAATCTATCAGACCAGCAGCGGCCAGTACTTTACAATTGCATCAAATGGGTCTCTGCAGTTGGCTGGTGCTAGTGCTGAGGGGGTGCAGAGCCTGCAGACTCTTACCATGACCAATTCCAGCCCTAGCCAGCCTACTATATTACAGTATGCTCAGACTGCAGACGGGCAACAGATACTACTTCCCAGCAATCAGTTGGTGCTACAAGGGGGAGAAATGCAGGCTTACCAAATCCGCTCATCGTCGGCACTGCCTCAGACTGTAGTCATGACCTCACCTGTCATAAGCTCTCAGGGCAAGTCTGACGACCCCCAGGCAAAGCGAGAGATCCGCTTGGCTAAAAACAGGGAGGCAGCCCGTGAGTGCCGCAGGAAGAAAAAGGAATATGTGAAGTGCTTGGAGAATCGCGTGGCTGTGCTGGAGAATCAAAACAAAACCCTGATTGAGGAGCTCAAAACGTTAAAAGACCTTTACTGTGTCAAAACGGGTTAATGCAGCTGCACTGGTACAGTGCTAAATGGACAATTTTTTGCAGATCTGCCTGTATAGACACAATTCTGGGCACAAGGAACGTGTCAGTTTCTtgtttttatacacatttttaataaacagattTGGAGTGGCAGACCAAAGAGTGAGAAACAATATAGATGgacaaaaatgaatgaattgtgtattgtgtttcctttacatatttttaataacaaGTGAGATCAGGTGTGTAtaatttgtgtatgtatgttgcGTGTATGTGGGCACACCTACACAGGGATTTTTTTGGCTTTACCAGTGTGTGACCTGTTCATTTACCAGGGaaattctgtgtttgtttttccaaAAGTGCTTTGCAGAAACTGTTGGAAAAAATAGTGCATATATTAAGCGCCTGCCATTTATACTCTGCCTCTCAGATGTACCTGAACTGTGTTTGAATATTGTGATGTGATTTGTTTTTCATTcagtctttttttgttgttgctttaGAATATTTGCTTTCCTTCCCCTTTTGACCAAATGTTCCAGTATTCCCATACCCACGTTTATCATACTTTTTATGGCACGGTTGTGCAACATTGCAGAGAGTCCGAGACCAACTTGGCCCGAGTTCAGCATCGGGAAGTGCTGGATGCTTATGTCTGGCTTTAGggtgcattgtagattaattttaGTTCAAACTTTACCAGAAAGAATCATAGATAACACAttgcattaaattatatttaaggtgatacattttttaatcaactTCAAGTTAAAAAGGAGAATGTTACTATTCATATATTTGATTATTGTTTCCAACACCACAGATGCACTGCCCACATGGTAAAGGATGATTTAAGTTAACAGCAATAATTGACTGACTTGTTTACTCTTACAAAGTGCACCTTTTAGAGCAGGGtaaagctgtttttgtttttttttttggcttaaagCTGTTACTGGGACAATTGAATCAGGGAGTACACCTGTACTTGAAAATGCAGGTGACACTGTTTATTTAGAACAGTGTCACCTGCATTAAAATGACAAGATGAGTCGTTTTATTaagtaaaactaaataaatatttttttcagcctCTGCA
>XM_007254234.3
GTCTGAGCGGTCATGGCGCCCGTCCGCACGGTTATGGTTATGGTCGCCTCGTCGTCGTTTGTCGTCGAAGGGGAAGGTGCACCAATGGCTCCCTGCACCGCTGACGTGTGTTGACGCGGGTACTTGCGTGCCAGTGACTAGCCAGAAAGTTTCGTCGAGCGTCGCtggtgGCAATGGAAGAGGTTCACCAGAACAGCACTAATGGCACTGAGTCACAAACTGTGACCATCCCTACAACTCTTACAGCTTCTCAATTATCACAGATAACCCAGATGTCTCTTGGAGGGTCACCAGTCACTGTGGTGCAACTACCTGGTGGTCAGATTCAAGTACAAGGAGTGATCCAATCTGCCCAGTCATCAGTTATTCAGTCTCCACCAGCACAAATACAGGGTCATCAGTCTGATAGTGACGATTCTCAGGACTCCTCAGACAGTGGATCTTCTAACCAGAAAACGAGGGAAATTCTAGCGCGGCGCCCTTCTTACAGGAAGATTTTGAACGACCTCTCAGCAGAAGAGATGGTGAATCGAAatgaaggagaggaggagatcTCGGCCTCATCCGCAATGACAACGGTGTCTCTACCTACGCCAATCTATCAGACCAGCAGCGGCCAGTACTTTACAATTGCATCAAATGGGTCTCTGCAGTTGGCTGGTGCTAGTGCTGAGGGGGTGCAGAGCCTGCAGACTCTTACCATGACCAATTCCAGCCCTAGCCAGCCTACTATATTACAGTATGCTCAGACTGCAGACGGGCAACAGATACTACTTCCCAGCAATCAGTTGGTGCTACAAGGGGGAGAAATGCAGGCTTACCAAATCCGCTCATCGTCGGCACTGCCTCAGACTGTAGTCATGACCTCACCTGTCATAAGCTCTCAGGGCAAGTCTGACGACCCCCAGGCAAAGCGAGAGATCCGCTTGGCTAAAAACAGGGAGGCAGCCCGTGAGTGCCGCAGGAAGAAAAAGGAATATGTGAAGTGCTTGGAGAATCGCGTGGCTGTGCTGGAGAATCAAAACAAAACCCTGATTGAGGAGCTCAAAACGTTAAAAGACCTTTACTGTGTCAAAACGGGTTAATGCAGCTGCACTGGTACAGTGCTAAATGGACAATTTTTTGCAGATCTGCCTGTATAGACACAATTCTGGGCACAAGGAACGTGTCAGTTTCTtgtttttatacacatttttaataaacagattTGGAGTGGCAGACCAAAGAGTGAGAAACAATATAGATGgacaaaaatgaatgaattgtgtattgtgtttcctttacatatttttaataacaaGTGAGATCAGGTGTGTAtaatttgtgtatgtatgttgcGTGTATGTGGGCACACCTACACAGGGATTTTTTTGGCTTTACCAGTGTGTGACCTGTTCATTTACCAGGGaaattctgtgtttgtttttccaaAAGTGCTTTGCAGAAACTGTTGGAAAAAATAGTGCATATATTAAGCGCCTGCCATTTATACTCTGCCTCTCAGATGTACCTGAACTGTGTTTGAATATTGTGATGTGATTTGTTTTTCATTcagtctttttttgttgttgctttaGAATATTTGCTTTCCTTCCCCTTTTGACCAAATGTTCCAGTATTCCCATACCCACGTTTATCATACTTTTTATGGCACGGTTGTGCAACATTGCAGAGAGTCCGAGACCAACTTGGCCCGAGTTCAGCATCGGGAAGTGCTGGATGCTTATGTCTGGCTTTAGggtgcattgtagattaattttaGTTCAAACTTTACCAGAAAGAATCATAGATAACACAttgcattaaattatatttaaggtgatacattttttaatcaactTCAAGTTAAAAAGGAGAATGTTACTATTCATATATTTGATTATTGTTTCCAACACCACAGATGCACTGCCCACATGGTAAAGGATGATTTAAGTTAACAGCAATAATTGACTGACTTGTTTACTCTTACAAAGTGCACCTTTTAGAGCAGGGtaaagctgtttttgtttttttttttggcttaaagCTGTTACTGGGACAATTGAATCAGGGAGTACACCTGTACTTGAAAATGCAGGTGACACTGTTTATTTAGAACAGTGTCACCTGCATTAAAATGACAAGATGAGTCGTTTTATTaagtaaaactaaataaatatttttttcagcctCTGCA
>XM_022675777.1
GGTCTGAGCGGTCATGGCGCCCGTCCGCACGGTTATGGTTATGGTCGCCTCGTCGTCGTTTGTCGTCGAAGGGGAAGGTGCACCAATGGCTCCCTGCACCGCTGACGTGTGTTGACGCGGGTACTTGCGTGCCAGTGACTAGCCAGAAAGTTTCGTCGAGCGTCGCGTAAtggtgGCAATGGAAGAGGTTCACCAGAACAGCACTAATGGCACTGAGTCACAAACTGTGACCATCCCTACAACTCTTACAGCTTCTCAATTATCACAGATAACCCAGATGTCTCTTGGAGGGTCACCAGTCACTGTGGTGCAACTACCTGGTGGTCAGATTCAAGTACAAGGAGTGATCCAATCTGCCCAGTCATCAGTTATTCAGTCTCCACCAGCACAAATACAGGGTCATCAGTCTGATAGTGACGATTCTCAGGACTCCTCAGACAGTGGATCTTCTAACCAGAAAACGAGGGAAATTCTAGCGCGGCGCCCTTCTTACAGGAAGATTTTGAACGACCTCTCAGCAGAAGAGATGGTGAATCGAAatgaaggagaggaggagatcTCGGCCTCATCCGCAATGACAACGGTGTCTCTACCTACGCCAATCTATCAGACCAGCAGCGGCCAGTACTTTACAATTGCATCAAATGGGTCTCTGCAGTTGGCTGGTGCTAGTGCTGAGGGGGTGCAGAGCCTGCAGACTCTTACCATGACCAATTCCAGCCCTAGCCAGCCTACTATATTACAGTATGCTCAGACTGCAGACGGGCAACAGATACTACTTCCCAGCAATCAGTTGGTGCTACAAGGGGGAGAAATGCAGGCTTACCAAATCCGCTCATCGTCGGCACTGCCTCAGACTGTAGTCATGACCTCACCTGTCATAAGCTCTCAGGGCAAGTCTGACGACCCCCAGGCAAAGCGAGAGATCCGCTTGGCTAAAAACAGGGAGGCAGCCCGTGAGTGCCGCAGGAAGAAAAAGGAATATGTGAAGTGCTTGGAGAATCGCGTGGCTGTGCTGGAGAATCAAAACAAAACCCTGATTGAGGAGCTCAAAACGTTAAAAGACCTTTACTGTGTCAAAACGGGTTAATGCAGCTGCACTGGTACAGTGCTAAATGGACAATTTTTTGCAGATCTGCCTGTATAGACACAATTCTGGGCACAAGGAACGTGTCAGTTTCTtgtttttatacacatttttaataaacagattTGGAGTGGCAGACCAAAGAGTGAGAAACAATATAGATGgacaaaaatgaatgaattgtgtattgtgtttcctttacatatttttaataacaaGTGAGATCAGGTGTGTAtaatttgtgtatgtatgttgcGTGTATGTGGGCACACCTACACAGGGATTTTTTTGGCTTTACCAGTGTGTGACCTGTTCATTTACCAGGGaaattctgtgtttgtttttccaaAAGTGCTTTGCAGAAACTGTTGGAAAAAATAGTGCATATATTAAGCGCCTGCCATTTATACTCTGCCTCTCAGATGTACCTGAACTGTGTTTGAATATTGTGATGTGATTTGTTTTTCATTcagtctttttttgttgttgctttaGAATATTTGCTTTCCTTCCCCTTTTGACCAAATGTTCCAGTATTCCCATACCCACGTTTATCATACTTTTTATGGCACGGTTGTGCAACATTGCAGAGAGTCCGAGACCAACTTGGCCCGAGTTCAGCATCGGGAAGTGCTGGATGCTTATGTCTGGCTTTAGggtgcattgtagattaattttaGTTCAAACTTTACCAGAAAGAATCATAGATAACACAttgcattaaattatatttaaggtgatacattttttaatcaactTCAAGTTAAAAAGGAGAATGTTACTATTCATATATTTGATTATTGTTTCCAACACCACAGATGCACTGCCCACATGGTAAAGGATGATTTAAGTTAACAGCAATAATTGACTGACTTGTTTACTCTTACAAAGTGCACCTTTTAGAGCAGGGtaaagctgtttttgtttttttttttggcttaaagCTGTTACTGGGACAATTGAATCAGGGAGTACACCTGTACTTGAAAATGCAGGTGACACTGTTTATTTAGAACAGTGTCACCTGCATTAAAATGACAAGATGAGTCGTTTTATTaagtaaaactaaataaatatttttttcagcctCTGCA

Function


NR:

description
cyclic AMP-dependent transcription factor ATF-1-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09053 ATF1; activating transcription factor 1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_007254233.3 False 2175 mRNA 0.42 8 36714888 36721897
XM_007254234.3 False 2176 mRNA 0.44 8 36715104 36721897
XM_022675777.1 True 2181 mRNA 0.44 8 36715103 36721897

Neighbor


gene id symbol gene type direction distance location
LOC103045375 atf7b,LOC108440868,LOC108271749,LOC107740570,LOC107711055,LOC107585125,LOC107582698,LOC107667392 coding upstream 60048 36643900 ~ 36654840 (+)
LOC103045881 NA coding upstream 72424 36625035 ~ 36642464 (+)
pfdn5 pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318 coding upstream 91877 36617376 ~ 36623011 (+)
espl1 LOC107576721 coding upstream 98792 36598105 ~ 36616096 (+)
LOC103047301 NA coding upstream 118144 36576618 ~ 36596744 (+)
LOC103042615 scn8ab,LOC108440919,LOC100304602 coding downstream 25659 36747556 ~ 36819093 (+)
LOC103041493 NA coding downstream 127750 36849647 ~ 36855962 (+)
LOC103040875 krt4,LOC108440969,LOC107667388,LOC106565226,LOC107711067 coding downstream 154751 36876648 ~ 36882405 (+)
LOC103040047 NA coding downstream 182721 36904618 ~ 36919543 (+)
os9 os9,LOC107711069,LOC107582707,LOC107673576,LOC107733587,LOC107585136 coding downstream 226068 36947965 ~ 36961567 (+)
LOC111193778 NA non-coding upstream 211326 36501233 ~ 36503562 (+)
G116255 NA non-coding upstream 252291 36416808 ~ 36462597 (+)
G116155 NA non-coding upstream 408126 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 491310 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 714832 35990033 ~ 36000056 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 10251 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 101567 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 103397 36825294 ~ 36827868 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding downstream 111592 36833489 ~ 36834522 (+)
G116360 NA non-coding downstream 118944 36840841 ~ 36843238 (+)
LOC103044253 LOC108440873 other upstream 1004 36657392 ~ 36713884 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 355111 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 726828 35982119 ~ 35988060 (+)
tomm6 NA other upstream 747010 35958543 ~ 35967878 (+)
G115931 NA other upstream 980529 35730379 ~ 35734359 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 378117 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 802954 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1668380 38390277 ~ 38394530 (+)
G116997 NA other downstream 2636974 39358871 ~ 39359388 (+)
LOC103033994 LOC103033994,LOC108441647 other downstream 4077574 40799471 ~ 40808545 (+)

Expression



Co-expression Network