LOC103045375 (atf7b,LOC108440868,LOC108271749,LOC107740570,LOC107711055,LOC107585125,LOC107582698,LOC107667392)


Basic Information

Item Value
gene id LOC103045375
gene name atf7b,LOC108440868,LOC108271749,LOC107740570,LOC107711055,LOC107585125,LOC107582698,LOC107667392
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36643900 ~ 36654840 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254240.3
gagtgagaggcGCAGAGAGGGAggagcggcggcggcggcggggtgagttagctaacgctaactaaccTGGCTAACTAGCAAACACCACCGGTCACCACTCACACGGGAAGTGATAAAGGAGctatttggtgtaaaatgggGGACGATCGACCTTTCGTGTGTTCTGCCCCTGGATGTGGACAGCGGTTTACCAATGAAGATCACTTGGCtgtacataaacacaaacatgagATGACTCTGAAGTTTGGACAGACCAGAACTGACACGGTTATAATTGCAGATCAGACACCCACTCCCACCCGTTTTTTGAAGAACTGTGAGGAAGTGGGTTTGTTCAGTGAGCTTGATGGCTCCTTTGAACAGGAGCTCCGCAAAACTCagcaggaagaggaggagaggagagccAAGACTGCGCTTTCTGCTCTTCAAATTCCCTCTGAAATGGAGAGGGATGGACCTCTGGAGATTGACTCCTCCCCTCCTGACAGCCCCTCATCTTCTTCCAGTATGACGGACAGCAAAGACTCGGTCACTATGACAAAGGAGCCGGTTGCATTGAGGAAGACTAAGGATATGCCTACACGGACAACAGCAAGCTCTGCACCAACACCAACAATAGTGCGACCAGGGTCTCTTCCTCTTCACCTAGGATACGATTCCTGTATGAACCCAACTCAGCCCTCACCTACTTCTGTCATCACAAGGACCCCTCCCTCCAACAGACTCAGctCTCCGTCTGGCTCCTTTCCTGTAATGATGCAACTTCCAAATGGTCAGACTGTTCCCCTACTTCCAAGTCCTGGACAAACATCAGTCATATCAttGGCCAGGTCATCAAACCCAGTACCCAACATCCCTGGGATTCCAGGCCCTCCTATTGGTGGAAGCAGCAGTGGCTCCTCCTCTCCATCTGGATACAGCTCACATAGCGATGCCAAGATGAGGCTTAAAGCAGCACTGTCACCACAGAGTGTTAGTTGCCCATTGCCAACCCAGAAAACAGAACCCAATGAGACACCTTCACCGGCTCAGCCACAGGTGTCTCCAGCTCCACCCAGAGGTGGGCGCAGACGTCGGGGGGCAGAGACGGAGCCTGATGAGCGTAGACGCCGTTTTCTAGAAAGGAACAGAGCTGCTGCGTATCGCTGTCGGCAGAAACGCAAAGTATGGGTCAATGCTCTGGAGAAGCGTGCAGAGGATCTCGCCACAAATAATGTTACCCTCACGAATGAAGTATCTCTGTTAAGGGGAGAGGTGACACGTTTGAAAGAGTTGCTGCTGGCTCATAAGGACTGCCCGGTCACTGCCATGCAGAAAAAAGCCTACCTAGCTGCAGGTGTTGATGAGAGTGCAGTGTCAGCCCTGGTGTTGCCAGTTTCAGTTCCTGCTCCAGTATCTGTGAATGGTTTGAGCGTGAGGGCTGCGGAGGCTGTGGCTGTTTTAGCCGGAATGGGCTCTGGCCAGTGGAGCAGTCCAGCTGGAGATGTGCCGTCCCAGTCACAGCCTACCTCCAGATGATGACCATGTACTTCAAGCCTGTGAGGACTGGGCGTCTGTGTGAGGAGGTGGGCTTGTTGCAGGAGTCCAATGTCCGATCTCTTCCCACCGGAACTGTTAGTCACAGTGTGTTTGTAAATGCCCTTCATATGTGGCAAATGGGAACAATTATCACTATGACCTGACCACACTCAGCTCCTTACCCTCAGAGTACGTATCACGGTTTCTCCTGTTACTATAGGCCACTGTAGCTAgagattgcattttttttttatatataaaaaaaaccttcccTCCCCCTCTTCTTTCCCCATCTTCTTGGACTAAGTGGCCTGAGTGTGTGACCTGTCACAGGATGTCGCTGGCAGACTATACAGATTGGATCACACTGCAGTAGAAAACCTGTAAAGACTCACTGTGTTCTTTCACTCCCGTGTACACAGAGATAGAGTACTTATGCACGCTTGTGCAGTGTTGTGCTCACTTGATATTTTGCCGTTTGCAGGTATTGCTCTATTTGTTTTTAGTCTCCGCAttgaaatactgttttttttttctttctaaatatTTGACTGCATGATTCAAACCACGTAAGGCAGAAGAGCACCACAATATGCAGACACTTTACGCTTACAGTCGCTCTTTCTAatactttcactttctctctttcttttctctcagtGTCTTGGTAAACCTAAATCATTTCTCTCAggtctctcctgctctgtggctGTGGTCGTCAGTGGAACTCTttgcctattattattataactgaaAGCCACAGGATAGGCTTGTCTGGAGATGAAGAgcaatatatttttctatttgaaTGTGCGTATCAGTCTGCATTTTGCGGTCTATGTATGAGATGTACGGGTAGCATAACCATAAACAAGTGTGTGATTGTTTTCTGTTGCAtcgcattttttttcctttaattaagAAGCCAACATAAGTACTTTGCATTAGAGGTTGTACTCAAATGTTTTTGGATATTGAGTCTCCAAAGTGGGCACCTGCGCATACACACATGCACCAACAATATCCCACTGCTTGCATTTTAGCGATGGGTTCTGTGTTTTGTGTACCATTGATGTGTTGTATGTGTGCAAGAATGTGAGGCCTTTGGTTATTGAtgctccttttttttaaatagccttTCCTTTTTAAAGGGGAAGGGAATGCTATCATGTATCACAATGCTTAGTACACCAGGATTTGATCTCTTAGTAATGGAAAGGGGTCCTCTCCATTGAGCCTTTGTCATTGAATGTTTGTATATGGCTTGTGTAGTGACTGAAAACCCCACACTTATGCACAGTGTCAAAACGCCCCTCTTTTCAGTCCTATTTTGATGATATCATTCAAACTACTAATCATTATGATTGCAGTTACGTTTGTTGCCTTGGTATAATTCCATCCtgactgtactgttttgtttatgttcccatccctgttttttgttttatttttgtgtgtttttttttttttttttttttttttttttttttacttttcatggATTACTTCTCCTCTGCAGTCATATCAGTCTCTGTGAGGCCTACCTATTCCTGTCTGGTGGTGTGCTTTCTCACCTGCAGCAGTGCATTGTGAAAGAGGAGCTTTTCTCAGTGTGTATCACTAACTGATCCGAAAGTGTGCAACTTGTCAGAAGAACCCTTTAACTAGAGCTGtaaatatcactaaatatagAATATGCCGATATATGTCCAAGCATTGCTGTCTGTACTATATTAACTAAATGAGATGGTCCTGAAGATATAttgtaataattaaacattaatggAAATCA

Function

symbol description
atf7b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in head. Orthologous to human ATF7 (activating transcription factor 7).

NR:

description
PREDICTED: cyclic AMP-dependent transcription factor ATF-7-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254240.3 True 3310 mRNA 0.46 12 36643900 36654840

Neighbor

gene id symbol gene type direction distance location
LOC103045881 NA coding upstream 1436 36625035 ~ 36642464 (+)
pfdn5 pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318 coding upstream 20889 36617376 ~ 36623011 (+)
espl1 LOC107576721 coding upstream 27804 36598105 ~ 36616096 (+)
LOC103047301 NA coding upstream 47156 36576618 ~ 36596744 (+)
LOC103047611 LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696 coding upstream 67384 36559811 ~ 36576516 (+)
LOC103043543 LOC103043543,LOC108440897,LOC108271751,LOC107582700,LOC107667378 coding downstream 60048 36714888 ~ 36721897 (+)
LOC103042615 scn8ab,LOC108440919,LOC100304602 coding downstream 92716 36747556 ~ 36819093 (+)
LOC103041493 NA coding downstream 194807 36849647 ~ 36855962 (+)
LOC103040875 krt4,LOC108440969,LOC107667388,LOC106565226,LOC107711067 coding downstream 221808 36876648 ~ 36882405 (+)
LOC103040047 NA coding downstream 249778 36904618 ~ 36919543 (+)
LOC111193778 NA non-coding upstream 140338 36501233 ~ 36503562 (+)
G116255 NA non-coding upstream 181303 36416808 ~ 36462597 (+)
G116155 NA non-coding upstream 337138 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 420322 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 643844 35990033 ~ 36000056 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 77308 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 168624 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 170454 36825294 ~ 36827868 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding downstream 178649 36833489 ~ 36834522 (+)
G116360 NA non-coding downstream 186001 36840841 ~ 36843238 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 284123 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 655840 35982119 ~ 35988060 (+)
tomm6 NA other upstream 676022 35958543 ~ 35967878 (+)
G115931 NA other upstream 909541 35730379 ~ 35734359 (+)
G115917 NA other upstream 967865 35642874 ~ 35676035 (+)
LOC103044253 LOC108440873 other downstream 2552 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 445174 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 870011 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1735437 38390277 ~ 38394530 (+)
G116997 NA other downstream 2704031 39358871 ~ 39359388 (+)

Expression


Co-expression Network