pfdn5 (pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318)


Basic Information

Item Value
gene id pfdn5
gene name pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36617376 ~ 36623011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254246.3
TCCGGTTTATCCGGAAGTGTCCCTTATTGTCTTTTTCTCAACATGGCGGTGAATCTGACTGAGTTATCTCTGTCTCAGCTGGAGGGATTGAAGACTCAGCTCGAACAGGAAACAGAGTTCCTGTCCTCATCCATAGCCCAGTTGAAAGTGGTCCAAACAAAGTATGTAGAAGCTAAGGACAGTCTGAATGTTCTCAAAAAGAGTAATGAAGgaAAAGAATTACTTGTTCCTCTTACCAGCTCTATGTATGTTCCAGGAACCCTGAATGATGTAGAACATGTATTGGTAGATGTGGGAACTGGTTACTTTGTAGAGAAAaaTGTGGAGGACAGTAAAGAATTCTTTAAGCGTAAAATTGACTTCCTAACAAAACAGATTGAGAAGGTTCAGCCTGCTCTTCAGGAAAAACATGCAATGAAGCAAGCTGTGGTTGAAGTCATGAACATGAAGCTACAGCAGCTGCACAGTCAACAGTCGTCACAGTCCGGAACCACTAAGGCctaaaaacactcacacaaacgcACATACAAACTAGCCTGtattcatgttcatgttcaatAACATATTCATGTTATTGTACTTAACACATTGACTTTTCAAATTGGATTTCACAGTCATTTAAATGGCAAATAAACTCTGCTTACTGACgctataataaattaatacattttttttcctgtgcaTGCTGCCTTATGCTGACTTTAGAATTGAGATACATTTCCTGATATTAGCCTCAGGTGCTGGAGGAACTATTTATTACACATTTGAGGCCTACTTTGGAATGCCCAGGTCCAGAAGCCGCATTAAAAGGAATAAATTGGTTATGAACACAAA

Function

symbol description
pfdn5 Predicted to enable unfolded protein binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within protein folding. Predicted to be part of prefoldin complex. Predicted to be active in cytoplasm. Orthologous to human PFDN5 (prefoldin subunit 5).

NR:

description
prefoldin subunit 5

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0016272 prefoldin complex cellular_component
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04797 pfdA, PFDN5; prefoldin alpha subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254246.3 True 834 mRNA 0.39 6 36617376 36623011

Neighbor

gene id symbol gene type direction distance location
espl1 LOC107576721 coding upstream 1280 36598105 ~ 36616096 (+)
LOC103047301 NA coding upstream 20632 36576618 ~ 36596744 (+)
LOC103047611 LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696 coding upstream 40860 36559811 ~ 36576516 (+)
LOC103021650 myl6,myl6b,LOC103021650,LOC108440770,LOC108271738,LOC107390870,LOC105013534,LOC107570608,LOC106950810 coding upstream 159287 36450998 ~ 36458089 (+)
tsfm tsfm coding upstream 167544 36446391 ~ 36449832 (+)
LOC103045881 NA coding downstream 2024 36625035 ~ 36642464 (+)
LOC103045375 atf7b,LOC108440868,LOC108271749,LOC107740570,LOC107711055,LOC107585125,LOC107582698,LOC107667392 coding downstream 20889 36643900 ~ 36654840 (+)
LOC103043543 LOC103043543,LOC108440897,LOC108271751,LOC107582700,LOC107667378 coding downstream 91877 36714888 ~ 36721897 (+)
LOC103042615 scn8ab,LOC108440919,LOC100304602 coding downstream 124545 36747556 ~ 36819093 (+)
LOC103041493 NA coding downstream 226636 36849647 ~ 36855962 (+)
LOC111193778 NA non-coding upstream 113814 36501233 ~ 36503562 (+)
G116255 NA non-coding upstream 154779 36416808 ~ 36462597 (+)
G116155 NA non-coding upstream 310614 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 393798 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 617320 35990033 ~ 36000056 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 109137 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 200453 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 202283 36825294 ~ 36827868 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding downstream 210478 36833489 ~ 36834522 (+)
G116360 NA non-coding downstream 217830 36840841 ~ 36843238 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 257599 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 629316 35982119 ~ 35988060 (+)
tomm6 NA other upstream 649498 35958543 ~ 35967878 (+)
G115931 NA other upstream 883017 35730379 ~ 35734359 (+)
G115917 NA other upstream 941341 35642874 ~ 35676035 (+)
LOC103044253 LOC108440873 other downstream 34381 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 477003 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 901840 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1767266 38390277 ~ 38394530 (+)
G116997 NA other downstream 2735860 39358871 ~ 39359388 (+)

Expression


Co-expression Network