tsfm (tsfm)


Basic Information

Item Value
gene id tsfm
gene name tsfm
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36446391 ~ 36449832 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254252.3
acTGTAGAGTAAGTACCGTGTCCTTTCGGCTTGCCGTATTCAGCGTGCTTCAATGACACACCGGTAACAGAGATGGCTGTATCGACTTTATTCAGGTCTATCAGAAAAGAACTCACTAAGGTCTGCTTCCAGCAGCATGTTCAGTGTTTACACAGCGGTCCGGATAAAGCCCTGCTGCTAAAACTGCGCAAAGCCACCGGCTACACCTTCATCAACTGCAAGAAAGCGCTGGAGAAGTTCAACAACGACATCGCACAGGCTGAAAGCTGGCTGCATGAACAGGCTCAGAAGGAGGGATGGAGCAAAGCGAGCAAGCTGGAGGGCAGGAGAGCCAAGGAGGGGCTGATTGGTGTTCTGAAGAATGACAGTGCAGCAGTCATGGTGGAGGTAAACTGTGAGACTGACTTTGTGGCAAGGAATGAAAAGTTTCAGCAGCTGGTGCAGGATGTTGCTTTGGCTACAATGGCTCATCATTGCAGCAAGGGACAAGGTGGATACAGAAAGAGTCTGTTGTCTGCTGAAGACCTTGCTAAGCTCACTATGGTGGAGGGCCCCTCACTGGCAGATCAGCTGGCTCTGACCATAGGCCGACTGGGTGAGAACATCTCCATAAGGCGAGCTGTGTCCATAGGTATACCTTCTGACTGGCACATTGGCTCATATGTGCATTCACCAGTTACAGGGCCCAGCAGTTTGATGATGGGGCGCTATGGCTCTCTGGTGGTGTTCCAGGGGGGGCCTGAGGGAGAGGTGGAGTTTCTGGGCAAGAAGCTGGGACAGCACATAGTAGGGGAGGCTCCTGATACTCTTGGCAACATGGAAGATCTACCCTGTGGGGAATCTGAGACACGGCTTTTACCACAGACCTTCCTGCTAGAGCCCAAATACACTGTAGGACAGTTCCTCACTCTGCATAACGCACGAGTGCTTGACTTCATACGCTACAAGTGTGGCGAGAGCAACACACCGGAGGTAGAGTGAGCAGAGATCCATTcatactgcattaaaaaaaacactctacaCATATGCAGTTACCCAGTTGCCCCagtcaagataaaaaaaaaaaagaataagacaTTTCCTATGAGGCAAAGCCAAAAGCTGGAGTGCTGATCTATTTCAGCACTGTGAAACACAAAAGACCAGGATGAAATCTCCTATTTTGGACTATCatgcaaaatggaaaaaatgaaatttattgagcccacacattatacacacacttcaGATGTGTACGATTATGATTTTGGTTACGGTTATGATGCTCAAATTTCATCAAATGAGCTGAatctgcatttaaaataaaacatttgatgTATCACA

Function

symbol description
tsfm Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 3. Orthologous to human TSFM (Ts translation elongation factor, mitochondrial).

NR:

description
elongation factor Ts, mitochondrial

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005739 mitochondrion cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K02357 tsf, TSFM; elongation factor Ts

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254252.3 True 1323 mRNA 0.47 6 36446391 36449832

Neighbor

gene id symbol gene type direction distance location
sumf1 sumf1,LOC107673603 coding upstream 12547 36428470 ~ 36433844 (+)
LOC103023734 NA coding upstream 106365 36335569 ~ 36340026 (+)
efcab12 NA coding upstream 110901 36330318 ~ 36335490 (+)
uroc1 uroc1 coding upstream 116355 36321843 ~ 36330036 (+)
LOC103023094 sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493 coding upstream 126361 36314267 ~ 36320030 (+)
LOC103021650 myl6,myl6b,LOC103021650,LOC108440770,LOC108271738,LOC107390870,LOC105013534,LOC107570608,LOC106950810 coding downstream 1166 36450998 ~ 36458089 (+)
LOC103047611 LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696 coding downstream 109979 36559811 ~ 36576516 (+)
LOC103047301 NA coding downstream 126786 36576618 ~ 36596744 (+)
espl1 LOC107576721 coding downstream 148273 36598105 ~ 36616096 (+)
pfdn5 pfdn5,LOC107711057,LOC107673463,LOC107740577,LOC107667318 coding downstream 167544 36617376 ~ 36623011 (+)
G116155 NA non-coding upstream 139629 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 222813 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 446335 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 513185 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 546998 35894947 ~ 35899393 (+)
LOC111193778 NA non-coding downstream 51401 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 282316 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 373632 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 375462 36825294 ~ 36827868 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding downstream 383657 36833489 ~ 36834522 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 86614 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 458331 35982119 ~ 35988060 (+)
tomm6 NA other upstream 478513 35958543 ~ 35967878 (+)
G115931 NA other upstream 712032 35730379 ~ 35734359 (+)
G115917 NA other upstream 770356 35642874 ~ 35676035 (+)
LOC103044253 LOC108440873 other downstream 207560 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 650182 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1075019 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1940445 38390277 ~ 38394530 (+)
G116997 NA other downstream 2909039 39358871 ~ 39359388 (+)

Expression


Co-expression Network