sumf1 (sumf1,LOC107673603)


Basic Information

Item Value
gene id sumf1
gene name sumf1,LOC107673603
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36428470 ~ 36433844 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254254.2
aaaggtcagGTGACTGATCACATGACCAAGTTCACAAAAAATGGCTTCACCCTGGTAAACTCTCTTATAGCGGGCATGGCTCTGTTCCTGTGGAGGTTTGGAGCGTTTCTGAGTGTTGTATTGTACCCGGTACCGCTCACTGTAAGCGGGTCAGATGTTGGAGCGGGTCCGGACTGCGGCTGCAGCGCTCTGAACCGGGAAACGAGCGAGGGAAAAGGCACAGTGTGTGAAAATCCAGCCGATAAATACACTGAAACAGCCAATGGAAACCCTTCTCAAGAGCATGAATATGACTTGCTCAGCAAGATGGTGCAGCTGGAAGGTGGCTTTTTCCTGATGGGTACAGATGTTCCAGGGATACCACAGGATGGGGAGACTCCTCAGAGGAGGGTGTGGATTGACACTTTTCTCATTGAAGAGCATGAGGTCAACAATAAGCAGTTTCAACGCTTCATTAACCAAACAGGCCACATTACAGAGGCTGAGCGATTTGGAGATTCGTTTGTGTTTGAGGGACTGCTGAGCGAAGAAATTAAGAATACTCTGACCCAAGCGGTTGCTGCTGCTCCCTGGTGGTCACCAGTGAAGGGAGCAGACTGGAGACATCCAGAGGGCCCAGATTCAACCATATCCAACAGGATGGATCACCCTGTACTACACGTTTCATGGGCAGATGCTCAAGCCTACTGTCAGTGGGCTCAGCGCAGGCTGCCCACAGAAGCTGAGTGGGAGTTGGCCTGCAGGGGTGGTCTGGAGGACAAGTTGTATCCATGGGGGAATAAGCTGATGCCCAGAGAAGAGCACTATGCAAACCTGTGGCAGGGAGAGTTCCCCAATGTGAACACAGCGGAGGATGGATATTTAAACACATCACCAGTGATGTCATTTCCCGCAAATGGCTTTGGTCTGTATGACATGGTGGGGAATGCCTGGGAGTGGACAGCAGACTGGTGGAACGTTCACCACACCAGAGATGAAGCTCGCAACCCGAAGGGACCAGAAAAGGGAACAGATAAAGTGAAGAAAGGAGGTTCCTATATGTGCCACAAGTCATACTGTTACAGGTACCGGTGTGCTGCCCGTAGCCAGAACACTCCTGACAGCTCCGCGTCTAACCTAGGCTTCCGCTGTGCAGCTGACTCAAAACTATGACCTCTGACCTAGACTGAACCTGCCTCACTGTTTTCCACACTGTCATGTCACTTGAATTTGACTGGGGGGCCATTTTTGCTATGttataatattgtgtttttatctaaataaacatttaaaatgtcgTA

Function

symbol description
sumf1 Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in mucosulfatidosis. Orthologous to human SUMF1 (sulfatase modifying factor 1).

NR:

description
sulfatase-modifying factor 1 isoform X2

GO: NA

KEGG:

id description
K13444 SUMF1, FGE; formylglycine-generating enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254254.2 True 1280 mRNA 0.50 9 36428470 36433844

Neighbor

gene id symbol gene type direction distance location
LOC103023734 NA coding upstream 88444 36335569 ~ 36340026 (+)
efcab12 NA coding upstream 92980 36330318 ~ 36335490 (+)
uroc1 uroc1 coding upstream 98434 36321843 ~ 36330036 (+)
LOC103023094 sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493 coding upstream 108440 36314267 ~ 36320030 (+)
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding upstream 136657 36287057 ~ 36291813 (+)
tsfm tsfm coding downstream 12547 36446391 ~ 36449832 (+)
LOC103021650 myl6,myl6b,LOC103021650,LOC108440770,LOC108271738,LOC107390870,LOC105013534,LOC107570608,LOC106950810 coding downstream 17154 36450998 ~ 36458089 (+)
LOC103047611 LOC108440812,LOC108271743,LOC107711051,LOC107585122,LOC107673583,LOC107582696 coding downstream 125967 36559811 ~ 36576516 (+)
LOC103047301 NA coding downstream 142774 36576618 ~ 36596744 (+)
espl1 LOC107576721 coding downstream 164261 36598105 ~ 36616096 (+)
G116155 NA non-coding upstream 121708 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 204892 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 428414 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 495264 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 529077 35894947 ~ 35899393 (+)
LOC111193778 NA non-coding downstream 67389 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 298304 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 389620 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 391450 36825294 ~ 36827868 (+)
G116353 LOC108440955,LOC108272218,LOC107711062,LOC100304745,LOC107585131,LOC107673602,LOC103386112 non-coding downstream 399645 36833489 ~ 36834522 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other upstream 68693 36342985 ~ 36359777 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 440410 35982119 ~ 35988060 (+)
tomm6 NA other upstream 460592 35958543 ~ 35967878 (+)
G115931 NA other upstream 694111 35730379 ~ 35734359 (+)
G115917 NA other upstream 752435 35642874 ~ 35676035 (+)
LOC103044253 LOC108440873 other downstream 223548 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 666170 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1091007 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 1956433 38390277 ~ 38394530 (+)
G116997 NA other downstream 2925027 39358871 ~ 39359388 (+)

Expression


Co-expression Network