LOC103023094 (sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493)


Basic Information

Item Value
gene id LOC103023094
gene name sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36314267 ~ 36320030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254255.3
CGTGTCTCTAAAGCGCTTCCTCTCGTAACGCGGCGGTGAGACTCTGCCGGTGGCTCCACACGGGGAGCTCAGATACTGAACGACTTGGACGGGAAAGAACACCATGGCTATTAAATTCCTGGAAGTAATAAAACCGTTCTGTGCGGTTCTACCCGAAATTCAGAAACCAGAAAGAAAGATCCAGTTCAGGGAAAAGGTGCTATGGACAGCCATCACTTTATTCATCTTTCTTGTGTGCTGTCagattCCTCTTTTTGGGATCATGTCTTCAGATTCAGCCGATCCATTCTATTGGATGAGAGTCATTCTGGCCTCCAACAGGGGTACTCTGATGGAGTTGGGTATCTCTCCTATCGTGACCTCTGGCCTCATCATGCAGCTGCTGGCTGGAGCTAAAATCATTGAGGTCGGAGACACGCCTAAAGACCGAGCACTGTTCAATGGAGCTCAGAAACTGTTTGGCATGATCATCACCATCGGCCAGGCTATCGTGTATGTGATGACTGGCATGTATGGAGACCCCTCAGAGATGGGTGCTGGCATCTGTCTTCTCATCATTATTCAGTTGTTTGTTGCGGGTCTAattgtgctgctgctggatgAGCTGCTTCAAAAAGGCTATGGTTTGGGCTCAGGAATTTCTCTCTTCATCGCCACCAACATCTGCGAGACAATTGTGTGGAAAGCCTTTAGCCCAACTACAGTCAACACAGGCAGAgGTACTGAATTTGAGGGTGCCATCATTGCCCTGTTCCACTTATTGGCAACACGTACCGATAAAGTGCGAGCTCTGAGAGAGGCCTTCTACAGGCAGAACCTGCCCAACCTTATGAACCTCATTGCTACAGTTTTTGTCTTTGCTGTGGTCATATACTTCCAGGGCTTCAGAGTTGACCTGCCTATCAAGTCTGCACGTTACCGTGGTCAGTACAACACCTACCCCATTAAACTCTTCTACACCTCCAACATCCCCATCATTCTGCAGTCTGCTCTTGTGTCCAACCTCTACGTCATCTCTCAGATGCTTTCTACACGGTTCAGTGGCAACTTCCTTGTCAATCTTTTGGGAACCTGGTCTGATACATCATCTGGTGGCCCAGCTCGTGCCTACCCTGTAGGAGGCCTGTGTTACTATCTCTCACCTCCGGAATCTTTTGGTTCTGTGCTGGATGATCCGGTTCATGCAGTCATCTACATTGTGTTCATGCTGGGATCTTGTGCCTTCTTCTCCAAGACATGGATCGAAGTGTCTGGGTCTTCTGCCAAAGATgtggccaaacagctcaaggAACAGCAGATGGTGATGAGGGGGCATAGAGAAACCTCCATGGTACATGAACTCAACAGGTACATCCCCACAGCAGCTGCATTTGGTGGATTGTGTATTGGTGGTCTGTCTGTCATGGCTGATTTCCTCGGTGCCATCGGGTCAGGAACAGGAATCCTGTTGGCAGTCACAATCATCTACCAGTACTTTGAGATCTTCGTTAAGGAACAGAGTGAAGTTGGAAGCATGGGAGCCCTACTCTTCTAAATTCTTTTCATATGGACACATGCATATGCTGACAGACATCTTatcaaactctttttttaatgagtgttgtcatcattttattttttattttcttttgtacaaTTTGAGTTTAAGTGGTCTGTTGTCACCAGTGCTGTCTTGAGCAAACTTCAAATTATTGGCCATTTGGGCCTTGGAATTTTTTTCTTTGGCCAGAAGGACAAATATTTCTACAATACTCAGTGGTTAATCAGTAAAGCTAGATTGAGCTTGAATGGTTGATGGGTGGTCTCATGTTTTTGAACTGCCCCACGTTGTTTCTTCAGAGTATTTCATCTAATTTTTCTACAGTTGATCTTAAGGTTCGTCCACAGTTTTTGCTTAGTGCTCTGCCATATCCCATATACTGAAGGCAGTGTTGAGGAGTGCCTCAGTTCTGTTTGACCACACAGTGGCCTGTCAGTCTTGCACTTCAGCATCATGCTGAATAGTGTTTGTCACTGGTGGCGTTTTGTAAACTTTCCTGAGCAGAATGGTTCACATTGCCATTGTTAGTGTTTGCTAGCTAGCAAAGGACATTTGTGTTATAAGCGATAAGCAATAGAAGCAGATGTGCTTTGTATTGTATAAGGCCATGTAATGGAACAGTCCAACTAAGTTGGAAGAGAGAAGGTAAAACACACTAGAAAGTGTGGTCCAACATTTCTGCCCTTTTTGTGAGAGATTCTATCCAAGCTGGAAACATTTTGTCTACATAAAAAGGTAGAAATGATTTTGAGTGAAAGTGTGATTGGTCAATGGATGGTTTTCTGACTAAAATGGTCTGGACCTTGTGGTTATAATAAACTTTTCACTTCCCTACACCAGGAAAACAATGTTTTGATGTCTTGTTGACTTTGTGTCTGTATATATGACATTTCATTTAATGTGCCACCATGTAAAATAACTTTTGCCGATGTAAAAAGAAATGCTGTTCCAAACCTCTTATCTTCTGGAAAGAGTGCTCATTCTCAGTAAAGGCTCTTTTTGTGAGAA

Function

symbol description
sec61a1 Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Involved in pronephric nephron development. Acts upstream of or within habenula development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including axis; digestive system; hatching gland; midbrain hindbrain boundary; and polster. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1).

NR:

description
protein transport protein Sec61 subunit alpha-like 1

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0021986 habenula development biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10956 SEC61A; protein transport protein SEC61 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254255.3 True 2548 mRNA 0.44 12 36314267 36320030

Neighbor

gene id symbol gene type direction distance location
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding upstream 22454 36287057 ~ 36291813 (+)
trnaf-gaa_2 NA coding upstream 65422 36248773 ~ 36248845 (+)
LOC103025322 LOC108439925,LOC100332423,LOC107748417,LOC107582687,LOC107667408,LOC107585110 coding upstream 70878 36231936 ~ 36243389 (+)
LOC111193774 col7a1 coding upstream 95295 36205672 ~ 36218972 (+)
col7a1 col7a1 coding upstream 118843 36129984 ~ 36195424 (+)
uroc1 uroc1 coding downstream 1813 36321843 ~ 36330036 (+)
efcab12 NA coding downstream 10288 36330318 ~ 36335490 (+)
LOC103023734 NA coding downstream 15539 36335569 ~ 36340026 (+)
sumf1 sumf1,LOC107673603 coding downstream 108440 36428470 ~ 36433844 (+)
tsfm tsfm coding downstream 126361 36446391 ~ 36449832 (+)
G116155 NA non-coding upstream 7505 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 90689 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 314211 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 381061 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 414874 35894947 ~ 35899393 (+)
G116255 NA non-coding downstream 96778 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 181203 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 412118 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 503434 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 505264 36825294 ~ 36827868 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 326207 35982119 ~ 35988060 (+)
tomm6 NA other upstream 346389 35958543 ~ 35967878 (+)
G115931 NA other upstream 579908 35730379 ~ 35734359 (+)
G115917 NA other upstream 638232 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 754541 35553601 ~ 35559726 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 22955 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 337362 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 779984 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1204821 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2070247 38390277 ~ 38394530 (+)

Expression


Co-expression Network