uroc1 (uroc1)


Basic Information

Item Value
gene id uroc1
gene name uroc1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 36321843 ~ 36330036 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254256.3
TCTGTCTATGAGAGGACTATTGAGTCAGGACACAAGATAGAACACAATATTCACTTCATCAGCCTTGCATCCGCTTTCAGTCTCGGCAGAGCCATTCCTATAAATCTTCTCAACTTTACTAGTTGATGTGATGGAGACTCTGAAGAAGCTTTGTGGGGGGTTACCTCTAAACCCTCTTCCACCAAACAACGGCAGAGACCCTAGTATGCCTCACGCACCTGTCCGCACCCCAAACCTCACTGCGGAGGAGGAACGGCTGGCCCTGAAGAATGCTCTGAGATATTTTCCTCCTGATCTTCACTCCACTCTGGCTCCAGAGTTTGCTCAGGAGCTCAGGCAGTATGGACACATCTACATGTATCGCTTCTGTCCTACTGTGCGCATGagggCTTATCCCATTGATCAGTACCCCTGTAAAATAAGACATGCTGCAGCCATCATGCACATGATCATGAATAATCTGGATCCAGCTGTAGCTCAGTTTCCACAGGAGCTTGTCACCTATGGCGGAAATGGACAGGTTTTCAGTAACTGGGCCCAGTTCTGGCTGGTGTTTCATTATCTGAGTACCATGAGTGAAGAGCAGACTCTGGTGATGTACAGTGGTCATCCTCTAGGCCTGTTTCCCAGCCTGCCCTCCTCCCCGCGCTGTGTCATCACCAACGGCATgGTCATTCCAAACTATTCCTCCAGGGAGAGCTACGAGAAGATGTTTGCTCTAGGAATCACCATGTATGGGCAGATGACTGCTGGAAGTTACTGTTATATTGGCCCTCAGGGGATTGTTCATGGAACCATGCTAACTGTGCTGAACGCAGGCCGGCGGTACCTTGGCACAAGTGATCTGAGAGGTCGTGTGTTTGTGACATCTGGATTAGGAGGCATGAGTGGAGCACAGGCCAAAGCTGCGGTCATTGCTGGCTGTGTGGGAGTTATTGCAGAGGTTGATGAGGTTCCTTTGAAGAAGAGACATGAGCAAGGCTGGCTAATGGAGGTCACTAAGGACCTTGACCACTGCATGAAGCGCATCAGGGAGGCCAGGAGATCACAAATGGCACTGAGTTTAGGTTATCATGGCAACATTGTGGACTTGTGGGAGCGTCTGTGGCAGGAGTATGAGCGGACGGGTGAGTTACTGGTGGATTTGGGTTCTGATCAAACATCTCTGCACAACCCGTTTAGTGGTGGATATTACCCAGTTCAGCTCAGCTTTAAACAAGCCAATCACCTCATGAACACTGACCCACAGCTCTTCAAAACCACTGTACATGAAAGCCTCTGCAGGCATGTAGCAGCCATTAATAAGCTTTCTGAGGAAGGAATGTACTTCTGGGATTATGGCAATGCCTTTCTTCTTGAGGCTAAGCGAGCAGGAGCTGAAGTGGAAAAGAGTGGAGCTGGAGCTACGGAGTTTAAATATCCCTCATATGTCCAACACATAATGGGTGATATCTTCTCTCTGGGTTTTGGGCCTTTCCGCTGGGTTTGTACCTCAGGAGACCCTGCTGATTTAGCAACAACTGATGGCATTGCCACTGCTGTGCTTGAAGAGATCAGTGCCTCAGTAACGGAGCTAGTGAGGCAGCAGTACAATGACAACATCTGCTGGATCCGTGAGGCTGGGAAACACAACATGgTGGTGGGCTCTCAGGCCCGTATTCTCTACTCAGACCAGAAGGGAAGAGTATCCATTGCCTTGGCCATAAACAAAGCCGTTTCGGATGGGAGAGTTAAAgCGCCTGTAGTAATAAGCAGAGATCATCATGATGTCAGTGGCACAGACAGCCCCTTTAGAGAGACATCCAACATTTACGATGGGTCAGCCTTCTGTGCAGaTATGGCTGTACAGAATGTAATTGGTGATTCATTCCGTGGTGCCACATGGGTTGCTTTACataatggtggtggtgttggatGGGGAGAGGTGATGAATGGAGGCTTTGGATTGGTTCTGGATGGCTCTGAGGATGCTGGAAAAAGAGCCAGAACAATGTTGAACTGGGATGTGTCTAATGGGGTGGCTCGAAGGTGCTGGTCAGGAAACTCAAATGCCCATGAGACCATTCAGCTCACCATGGAGGATCAGACGCAGTTGCGAGTTACACTACCTTACCACGTACAGGATGAACGTATACTATACAGAGCACTGCACTGAACTACACCCCTCTCACATCACCACACTTctgtaaaataatgattttaactGAAAGAAGAAGGTACAGTACAAGTTATGACAAGTCAAAAAAATCTCAGAACGTATACCACAGTATGCAAGAAATCAAGTATGGCAGTAAAAACCAGTCACATCAGCAGGTTCTGAGAGGATCCATACCACATACAACATGCAAAACCCATGAATAATTCACCCATGTGTTCATCTTTGAAGATCAAATAAATGTGGACTAGTAACTTCACCATA

Function

symbol description
uroc1 Predicted to enable urocanate hydratase activity. Predicted to be involved in histidine catabolic process. Predicted to act upstream of or within histidine metabolic process. Human ortholog(s) of this gene implicated in urocanase deficiency. Orthologous to human UROC1 (urocanate hydratase 1).

NR:

description
urocanate hydratase

GO:

id name namespace
GO:0016153 urocanate hydratase activity molecular_function

KEGG:

id description
K01712 hutU, UROC1; urocanate hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254256.3 True 2419 mRNA 0.48 19 36321843 36330036

Neighbor

gene id symbol gene type direction distance location
LOC103023094 sec61a1,LOC103023094,LOC102228108,LOC108440718,LOC107384934,LOC106518493 coding upstream 1813 36314267 ~ 36320030 (+)
LOC103024783 ip6k2b,LOC103024783,LOC108440711,LOC107585112,LOC107673575,LOC107711042,LOC108272042,LOC107748392 coding upstream 30030 36287057 ~ 36291813 (+)
trnaf-gaa_2 NA coding upstream 72998 36248773 ~ 36248845 (+)
LOC103025322 LOC108439925,LOC100332423,LOC107748417,LOC107582687,LOC107667408,LOC107585110 coding upstream 78454 36231936 ~ 36243389 (+)
LOC111193774 col7a1 coding upstream 102871 36205672 ~ 36218972 (+)
efcab12 NA coding downstream 282 36330318 ~ 36335490 (+)
LOC103023734 NA coding downstream 5533 36335569 ~ 36340026 (+)
sumf1 sumf1,LOC107673603 coding downstream 98434 36428470 ~ 36433844 (+)
tsfm tsfm coding downstream 116355 36446391 ~ 36449832 (+)
LOC103021650 myl6,myl6b,LOC103021650,LOC108440770,LOC108271738,LOC107390870,LOC105013534,LOC107570608,LOC106950810 coding downstream 120962 36450998 ~ 36458089 (+)
G116155 NA non-coding upstream 15081 36306350 ~ 36306762 (+)
G116138 NA non-coding upstream 98265 36189774 ~ 36223578 (+)
G116105 LOC103030273,LOC108440644,LOC107712078,LOC107721176,LOC107673500 non-coding upstream 321787 35990033 ~ 36000056 (+)
G116050 NA non-coding upstream 388637 35930924 ~ 35933206 (+)
LOC111193772 NA non-coding upstream 422450 35894947 ~ 35899393 (+)
G116255 NA non-coding downstream 86772 36416808 ~ 36462597 (+)
LOC111193778 NA non-coding downstream 171197 36501233 ~ 36503562 (+)
G116349 LOC108440912,LOC108439999 non-coding downstream 402112 36732148 ~ 36742014 (+)
G116359 NA non-coding downstream 493428 36823464 ~ 36831576 (+)
G116356 LOC103042096,LOC108440962 non-coding downstream 495258 36825294 ~ 36827868 (+)
G116103 prkcda,LOC103030273,LOC108440644,LOC107582675,LOC107667398,LOC107721176,LOC107673500,LOC107712078,LOC108271968 other upstream 333783 35982119 ~ 35988060 (+)
tomm6 NA other upstream 353965 35958543 ~ 35967878 (+)
G115931 NA other upstream 587484 35730379 ~ 35734359 (+)
G115917 NA other upstream 645808 35642874 ~ 35676035 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other upstream 762117 35553601 ~ 35559726 (+)
LOC103024058 LOC103024058,LOC108440764,LOC107748389,LOC107711047,LOC107673509,LOC107585116,LOC106583201 other downstream 12949 36342985 ~ 36359777 (+)
LOC103044253 LOC108440873 other downstream 327356 36657392 ~ 36713884 (+)
LOC103045245 vdrb,LOC108272216,LOC107585146,LOC107673565,LOC107711077,LOC108441087 other downstream 769978 37100014 ~ 37121327 (+)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289 other downstream 1194815 37524851 ~ 37612322 (+)
LOC103036266 LOC108441345 other downstream 2060241 38390277 ~ 38394530 (+)

Expression


Co-expression Network